DY260652

Overview
NameDY260652
Unique NameDY260652
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length979
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260652 vs. ExPASy Swiss-Prot
Match: MAOM_MOUSE (NAD-dependent malic enzyme, mitochondrial OS=Mus musculus GN=Me2 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.205e-35
Identity = 74/160 (46.25%), Postives = 105/160 (65.62%), Query Frame = 3
Query:    3 LIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFE-YNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQN 479
            +IG +G G  FT  VI+AMAS NE+P+I ALSNPT+Q+ECTAE+AYT ++GR +FASGSPF+P +  +G+VF PGQ NNAYIFPG  L +++  A  + D + L A++AL  Q+T+    +G +YP  +NI+              Y   +A R P P++
Sbjct:  389 IIGVAGAGPLFTHGVIKAMASINERPIIFALSNPTAQAECTAEDAYTLTEGRCLFASGSPFEPVKLQDGRVFTPGQGNNAYIFPGVALAVILCEARHISDTVFLEAAKALTTQLTDAELAQGRLYPSLANIQEVSANIAIKLAEYLYANKMAFRYPEPED 548          
BLAST of DY260652 vs. ExPASy Swiss-Prot
Match: MAO1_ENTS8 (NAD-dependent malic enzyme OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=sfcA PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 2.790e-30
Identity = 71/177 (40.11%), Postives = 100/177 (56.50%), Query Frame = 3
Query:    3 LIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 533
            LIG SG    FT+E+I  M     +P+++ LSNPTS+ E T  +   W+ G A+ A+GSPF P     K +   Q NNAYIFPG GLG++ SGA+RV D+M++AASEALA      N   GL+ PP ++I+               + GVA +    + L++  E   + P YR+YR
Sbjct:  387 LIGVSGQTGLFTEEIIREMHKHCARPIVMPLSNPTSRVEATPHDILNWTDGAALVATGSPFQPVTVKEKTYPIAQCNNAYIFPGIGLGIISSGALRVTDEMMMAASEALASHSPLVNTGSGLVLPPLTDIQQVSKDIAFAVGKMAQQQGVAVK-TSAEALLQAIEENFWLPEYRSYR 562          
BLAST of DY260652 vs. ExPASy Swiss-Prot
Match: MAO1_COLP3 (NAD-dependent malic enzyme OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=sfcA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.362e-29
Identity = 74/177 (41.81%), Postives = 94/177 (53.11%), Query Frame = 3
Query:    3 LIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 533
            LIG SG    FT++VI AM S  E P+I  LSNP+ Q E T  +   W++G+ I A+GSPFDP EY GK F   Q NN+YIFPG GL +V +   R+ D ML  ASE LA      N E   + PP ++I               Y+ G+A  L   + L K  E   + P YR YR
Sbjct:  383 LIGVSGQAGLFTEKVITAMKSHCEMPIIFPLSNPSRQVEATPSQVINWTQGQVIIATGSPFDPIEYQGKTFPIAQCNNSYIFPGVGLAVVAANISRITDGMLQVASETLAAASPLANGESDELLPPLTSIAQLSRDIAFAIAKVAYKQGLALELTDDELLAK-IEHNFWKPEYRQYR 558          
BLAST of DY260652 vs. ExPASy Swiss-Prot
Match: MAO1_SALTY (NAD-dependent malic enzyme OS=Salmonella typhimurium GN=sfcA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 3.085e-29
Identity = 69/177 (38.98%), Postives = 101/177 (57.06%), Query Frame = 3
Query:    3 LIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 533
            LIG SG    FT+E+I  M     +P+++ LSNPTS+ E T ++   W++G A+ A+GSPF P  +  KV+   Q NNAYIFPG GLG++ SGA R+ D+ML++ASE LAK     N  +GL+ P   +I+               + GVA +    + L +  +   + P YR+YR
Sbjct:  386 LIGVSGQTGLFTEEIIREMHKHCPRPIVMPLSNPTSRVEATPQDIIAWTEGNALVATGSPFSPVIWKDKVYPIAQCNNAYIFPGIGLGVIASGASRITDEMLMSASETLAKHSPLVNNGEGLVLPALKDIQVVSRAIAFAVGKMAQQQGVAVK-TSAEALQQAIDDNFWKPEYRDYR 561          
BLAST of DY260652 vs. ExPASy Swiss-Prot
Match: MAO1_SALTI (NAD-dependent malic enzyme OS=Salmonella typhi GN=sfcA PE=3 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 3.085e-29
Identity = 69/177 (38.98%), Postives = 101/177 (57.06%), Query Frame = 3
Query:    3 LIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 533
            LIG SG    FT+E+I  M     +P+++ LSNPTS+ E T ++   W++G A+ A+GSPF P  +  KV+   Q NNAYIFPG GLG++ SGA R+ D+ML++ASE LAK     N  +GL+ P   +I+               + GVA +    + L +  +   + P YR+YR
Sbjct:  386 LIGVSGQTGLFTEEIIREMHKHCPRPIVMPLSNPTSRVEATPQDIIAWTEGNALVATGSPFSPVIWKDKVYPIAQCNNAYIFPGIGLGVIASGASRITDEMLMSASETLAKHSPLVNNGEGLVLPALKDIQVVSRAIAFAVGKMAQQQGVAVK-TSAEALQQAIDDNFWKPEYRDYR 561          
BLAST of DY260652 vs. ExPASy Swiss-Prot
Match: MAO1_SALSV (NAD-dependent malic enzyme OS=Salmonella schwarzengrund (strain CVM19633) GN=sfcA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 3.085e-29
Identity = 69/177 (38.98%), Postives = 101/177 (57.06%), Query Frame = 3
Query:    3 LIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 533
            LIG SG    FT+E+I  M     +P+++ LSNPTS+ E T ++   W++G A+ A+GSPF P  +  KV+   Q NNAYIFPG GLG++ SGA R+ D+ML++ASE LAK     N  +GL+ P   +I+               + GVA +    + L +  +   + P YR+YR
Sbjct:  386 LIGVSGQTGLFTEEIIREMHKHCPRPIVMPLSNPTSRVEATPQDIIAWTEGNALVATGSPFSPVIWKDKVYPIAQCNNAYIFPGIGLGVIASGASRITDEMLMSASETLAKHSPLVNNGEGLVLPALKDIQVVSRAIAFAVGKMAQQQGVAVK-TSAEALQQAIDDNFWKPEYRDYR 561          
BLAST of DY260652 vs. ExPASy Swiss-Prot
Match: MAO1_SALPB (NAD-dependent malic enzyme OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=sfcA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 3.085e-29
Identity = 69/177 (38.98%), Postives = 101/177 (57.06%), Query Frame = 3
Query:    3 LIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 533
            LIG SG    FT+E+I  M     +P+++ LSNPTS+ E T ++   W++G A+ A+GSPF P  +  KV+   Q NNAYIFPG GLG++ SGA R+ D+ML++ASE LAK     N  +GL+ P   +I+               + GVA +    + L +  +   + P YR+YR
Sbjct:  386 LIGVSGQTGLFTEEIIREMHKHCPRPIVMPLSNPTSRVEATPQDIIAWTEGNALVATGSPFSPVIWKDKVYPIAQCNNAYIFPGIGLGVIASGASRITDEMLMSASETLAKHSPLVNNGEGLVLPALKDIQVVSRAIAFAVGKMAQQQGVAVK-TSAEALQQAIDDNFWKPEYRDYR 561          
BLAST of DY260652 vs. ExPASy Swiss-Prot
Match: MAO1_SALPA (NAD-dependent malic enzyme OS=Salmonella paratyphi A GN=sfcA PE=3 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 3.085e-29
Identity = 69/177 (38.98%), Postives = 101/177 (57.06%), Query Frame = 3
Query:    3 LIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 533
            LIG SG    FT+E+I  M     +P+++ LSNPTS+ E T ++   W++G A+ A+GSPF P  +  KV+   Q NNAYIFPG GLG++ SGA R+ D+ML++ASE LAK     N  +GL+ P   +I+               + GVA +    + L +  +   + P YR+YR
Sbjct:  386 LIGVSGQTGLFTEEIIREMHKHCPRPIVMPLSNPTSRVEATPQDIIAWTEGNALVATGSPFSPVIWKDKVYPIAQCNNAYIFPGIGLGVIASGASRITDEMLMSASETLAKHSPLVNNGEGLVLPALKDIQVVSRAIAFAVGKMAQQQGVAVK-TSAEALQQAIDDNFWKPEYRDYR 561          
BLAST of DY260652 vs. ExPASy Swiss-Prot
Match: MAO1_SALHS (NAD-dependent malic enzyme OS=Salmonella heidelberg (strain SL476) GN=sfcA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 3.085e-29
Identity = 69/177 (38.98%), Postives = 101/177 (57.06%), Query Frame = 3
Query:    3 LIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 533
            LIG SG    FT+E+I  M     +P+++ LSNPTS+ E T ++   W++G A+ A+GSPF P  +  KV+   Q NNAYIFPG GLG++ SGA R+ D+ML++ASE LAK     N  +GL+ P   +I+               + GVA +    + L +  +   + P YR+YR
Sbjct:  386 LIGVSGQTGLFTEEIIREMHKHCPRPIVMPLSNPTSRVEATPQDIIAWTEGNALVATGSPFSPVIWKDKVYPIAQCNNAYIFPGIGLGVIASGASRITDEMLMSASETLAKHSPLVNNGEGLVLPALKDIQVVSRAIAFAVGKMAQQQGVAVK-TSAEALQQAIDDNFWKPEYRDYR 561          
BLAST of DY260652 vs. ExPASy Swiss-Prot
Match: MAO1_SALCH (NAD-dependent malic enzyme OS=Salmonella choleraesuis GN=sfcA PE=3 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 3.085e-29
Identity = 69/177 (38.98%), Postives = 101/177 (57.06%), Query Frame = 3
Query:    3 LIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 533
            LIG SG    FT+E+I  M     +P+++ LSNPTS+ E T ++   W++G A+ A+GSPF P  +  KV+   Q NNAYIFPG GLG++ SGA R+ D+ML++ASE LAK     N  +GL+ P   +I+               + GVA +    + L +  +   + P YR+YR
Sbjct:  386 LIGVSGQTGLFTEEIIREMHKHCPRPIVMPLSNPTSRVEATPQDIIVWTEGNALVATGSPFSPVIWKDKVYPIAQCNNAYIFPGIGLGVIASGASRITDEMLMSASETLAKHSPLVNNGEGLVLPALKDIQVVSRAIAFAVGKMAQQQGVAVK-TSAEALQQAIDDNFWKPEYRDYR 561          
The following BLAST results are available for this feature:
BLAST of DY260652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
MAOM_MOUSE2.205e-3546.25NAD-dependent malic enzyme, mitochondrial OS=Mus m... [more]
MAO1_ENTS82.790e-3040.11NAD-dependent malic enzyme OS=Enterobacter sakazak... [more]
MAO1_COLP32.362e-2941.81NAD-dependent malic enzyme OS=Colwellia psychreryt... [more]
MAO1_SALTY3.085e-2938.98NAD-dependent malic enzyme OS=Salmonella typhimuri... [more]
MAO1_SALTI3.085e-2938.98NAD-dependent malic enzyme OS=Salmonella typhi GN=... [more]
MAO1_SALSV3.085e-2938.98NAD-dependent malic enzyme OS=Salmonella schwarzen... [more]
MAO1_SALPB3.085e-2938.98NAD-dependent malic enzyme OS=Salmonella paratyphi... [more]
MAO1_SALPA3.085e-2938.98NAD-dependent malic enzyme OS=Salmonella paratyphi... [more]
MAO1_SALHS3.085e-2938.98NAD-dependent malic enzyme OS=Salmonella heidelber... [more]
MAO1_SALCH3.085e-2938.98NAD-dependent malic enzyme OS=Salmonella choleraes... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP13YD06FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260652 ID=DY260652; Name=DY260652; organism=Citrus clementina; type=EST; length=979bp
TTTTGATTGGATCATCTGGAGTTGGAAGAACTTTTACAAAAGAAGTAATC
GAGGCCATGGCCTCCTTCAATGAGAAACCTCTCATCCTGGCTCTCTCCAA
CCCAACCTCACAGTCAGAATGTACAGCTGAAGAAGCTTACACTTGGAGTA
AGGGTCGTGCAATTTTCGCTAGTGGAAGTCCATTTGATCCTTTTGAATAC
AATGGAAAAGTTTTTGTTCCTGGCCAGGCCAACAATGCTTACATCTTCCC
TGGATTTGGTTTGGGTTTGGTCATCTCTGGAGCAATTCGGGTACATGACG
ACATGCTTCTGGCAGCCTCGGAAGCCTTGGCAAAACAAGTGACAGAAGAG
AACTTTGAGAAGGGATTGATCTACCCACCATTTTCTAATATTAGAAAAAT
TTCAGCCAATATAGCTGCTAATGTTGCTGCTAAGGCATATGAACTAGGCG
TGGCTACGCGTCTCCCTCGACCTCAGAATCTGGTGAAGTGCGCTGAAAGT
TGCATGTATACCCCTGTCTACCGAAACTATCGTTAAATGTTCGGCCAAAA
TTTCTGTCTCCGCTGAGTGTCTTTAAGCAAAAATAATGTCAAATAACTTG
TTTTGGTGGGTTATGGTGGCTTTTGTACTTGTGCCAGTATTGCAGTATAT
GTGTACTTAACCAAAGGAAGTAGTGGACCCCTGATTAATAGGTTGATGCC
CTATATTTCACTTCTTCTAAGACTCTCTAATGCTCTTGCCACAGGTTGGA
ACTTGACAAAAGAGTTCTGCGTTTAACCAAGTTGTAACGAATACGGCGAC
TATCCTCCATTATTAATTTCTATATTTCTCAACTAATATTAATGTCAAAA
TAATGACGTTATACTAATAATAGAATATATCAAAATCCAACAGAAATCGA
GCTATCCCGTACCTCTCAGATTATATAATATCTTATTCCTTCCAGATGTT
TATCATTCTATTCCGTTTATCTTCTTTTT
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