DY260712

Overview
NameDY260712
Unique NameDY260712
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length942
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260712 vs. ExPASy Swiss-Prot
Match: RADA_THENV (DNA repair and recombination protein radA OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=radA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.392e-33
Identity = 82/170 (48.24%), Postives = 102/170 (60.00%), Query Frame = 3
Query:  417 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGEPAERQQNWGKCSPR*QKISEGINVAV*RTNQFKADPGGGGFLSNPKKP 926
            GIET A+TE  GEF SGKTQL H L V  QLP    G   K  YIDTE TFRP+RI+ IA+  G+DP   L+NI YARAY+ +HQ  L+    + + +    LL+VDSVIA FR +F GR   AERQQ   K      ++++  +VAV  TNQ  A P    F  NP +P
Sbjct:  113 GIETRAVTEVAGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSSDHQMILVDQAKSIIKQNNVALLVVDSVIAHFRSEFPGRENLAERQQKLNKHVADLLRLADAYDVAVVITNQVMAQP--DVFFGNPLRP 280          
BLAST of DY260712 vs. ExPASy Swiss-Prot
Match: RADA_PYRIL (DNA repair and recombination protein radA OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=radA PE=3 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 7.392e-33
Identity = 83/170 (48.82%), Postives = 102/170 (60.00%), Query Frame = 3
Query:  417 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGEPAERQQNWGKCSPR*QKISEGINVAV*RTNQFKADPGGGGFLSNPKKP 926
            GIET A+TE  GEF SGKTQL H L V  QLP    G   K  YIDTE TFRP+RI+ IA+  G+DP   L+NI YARAY+ +HQ  L+    + + +    LLIVDSVIA FR +F GR   AERQQ   K      ++++  +VAV  TNQ  A P    F  NP +P
Sbjct:  113 GIETRAVTEVAGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSSDHQMILVDQAKSIIRQHNVALLIVDSVIAHFRSEFPGRENLAERQQKLNKHVADLLRLADAYDVAVVITNQVMAQP--DVFFGNPLRP 280          
BLAST of DY260712 vs. ExPASy Swiss-Prot
Match: RADA_PYRAR (DNA repair and recombination protein radA OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=radA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.151e-32
Identity = 80/170 (47.06%), Postives = 101/170 (59.41%), Query Frame = 3
Query:  417 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGEPAERQQNWGKCSPR*QKISEGINVAV*RTNQFKADPGGGGFLSNPKKP 926
            GIET A+TE  GEF SGKTQL H L V  QLP    G   K  YIDTE TFRP+RI+ +A   G+DP   L+NI YARAY+ +HQ  L+    + + +    L++VDSVIA FR +F GR   AERQQ   K      ++++  +VAV  TNQ  A P    F  NP +P
Sbjct:  116 GIETRAVTEVVGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAIYIDTENTFRPERIMQMARARGLDPDQALNNIFYARAYSSDHQMILVEHAKSIVKQHNVALIVVDSVIAHFRSEFPGRENLAERQQKLNKHVADLLRLADAYDVAVVITNQVMAQP--DVFFGNPLRP 283          
BLAST of DY260712 vs. ExPASy Swiss-Prot
Match: RADA_NANEQ (DNA repair and recombination protein radA OS=Nanoarchaeum equitans GN=radA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.067e-31
Identity = 76/164 (46.34%), Postives = 101/164 (61.59%), Query Frame = 3
Query:  417 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE------EPFRLLIVDSVIALFRVDFTGRGEPAERQQNWGKCSPR*QKISEGINVAV*RTNQFKADP 890
            GIET A+TE +GE+ SGKTQ+ H L V  QLP    G  GK  YIDTEGTFRP+RI  +AE   +DP   L N+ + + +  +HQ      LAA+ +E      EP +L++VDS+ ALFR ++TGRG+ AERQ   G+      +I+E  NVA+  TNQ  A P
Sbjct:  103 GIETAALTEFYGEYGSGKTQVGHQLAVDVQLPPEQGGLEGKAVYIDTEGTFRPERIKQMAEALDLDPKKALKNVYHMKVFNTDHQM-----LAARKAEELIRKGEPIKLIVVDSLTALFRAEYTGRGQLAERQHKLGRHVHDLLRIAELYNVAIYVTNQVMAKP 261          
BLAST of DY260712 vs. ExPASy Swiss-Prot
Match: RADA_DESK1 (DNA repair and recombination protein radA OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=radA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.484e-30
Identity = 73/158 (46.20%), Postives = 95/158 (60.13%), Query Frame = 3
Query:  417 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGEPAERQQNWGKCSPR*QKISEGINVAV*RTNQFKADP 890
            G+ET  ITE FGE+ SGKTQ+ H L V  QL     G NG+  YIDTEGTFR +RI  +A   G+DP  V+DNI Y RAY  +HQ  ++  L   + +   RL+I+DSV + FR ++ GR   AERQQ       +  +++E  NVAV  TNQ  A P
Sbjct:  107 GVETKTITEFFGEYGSGKTQICHQLSVNVQLTPEKGGLNGRAVYIDTEGTFRWERIEAMARALGLDPDKVMDNIYYMRAYNSDHQIAIVDELFTFVPKNDVRLVILDSVTSHFRAEYPGREHLAERQQKLNSHLHQLMRLAEAYNVAVVVTNQVMARP 264          
BLAST of DY260712 vs. ExPASy Swiss-Prot
Match: RADA_DESAM (DNA repair and recombination protein radA OS=Desulfurococcus amylolyticus GN=radA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.484e-30
Identity = 73/158 (46.20%), Postives = 95/158 (60.13%), Query Frame = 3
Query:  417 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGEPAERQQNWGKCSPR*QKISEGINVAV*RTNQFKADP 890
            G+ET  ITE FGE+ SGKTQ+ H L V  QL     G NG+  YIDTEGTFR +RI  +A   G+DP  V+DNI Y RAY  +HQ  ++  L   + +   RL+I+DSV + FR ++ GR   AERQQ       +  +++E  NVAV  TNQ  A P
Sbjct:  107 GVETKTITEFFGEYGSGKTQICHQLSVNVQLTPEKGGLNGRAVYIDTEGTFRWERIEAMARALGLDPDKVMDNIYYMRAYNSDHQIAIVDELFTFVPKNDVRLVILDSVTSHFRAEYPGREHLAERQQKLNSHLHQLMRLAEAYNVAVVVTNQVMARP 264          
BLAST of DY260712 vs. ExPASy Swiss-Prot
Match: RADA_ARCFU (DNA repair and recombination protein radA OS=Archaeoglobus fulgidus GN=radA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.990e-30
Identity = 81/175 (46.29%), Postives = 102/175 (58.29%), Query Frame = 3
Query:  417 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLL---LGLAAKMSEE--PFRLLIVDSVIALFRVDFTGRGEPAERQQNWGKCSPR*QKISEGINVAV*RTNQFKADPGGGGFLSNPKKP 926
            G+ET AITE FGEF SGKTQ+ H L V  QLP +  G  G V  IDTE TFRP+RI+ +AE  G+D   VL NI  A+AY   HQ  L+     LA K+ +E  P RL+IVDS+++ FR ++ GRG  A+RQQ   +      K  E  N A+  TNQ  A P       +P KP
Sbjct:  104 GVETQAITEFFGEFGSGKTQICHQLAVNVQLPEDEGGLEGSVIIIDTENTFRPERIIQMAEAKGLDGNEVLKNIYVAQAYNSNHQMLLVDNAKELAEKLKKEGRPVRLIIVDSLMSHFRAEYVGRGTLADRQQKLNRHLHDLMKFGELYNAAIVVTNQVMARP--DVLFGDPTKP 276          
BLAST of DY260712 vs. ExPASy Swiss-Prot
Match: RADA_METS3 (DNA repair and recombination protein radA OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=radA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.487e-29
Identity = 76/174 (43.68%), Postives = 101/174 (58.05%), Query Frame = 3
Query:  417 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE-----EPFRLLIVDSVIALFRVDFTGRGEPAERQQNWGKCSPR*QKISEGINVAV*RTNQFKADPGGGGFLSNPKK 923
            GIET +ITE FGEF SGK+Q++H L V  QLP    G +G+  +IDTE TFRP+RI  IA  F +D   VL  I  ARA+   HQ    + +A K++E        +L+IVDS++A FR ++ GR   A RQQ   +     Q+I+   NVAV  TNQ +A P    F  +P K
Sbjct:   93 GIETQSITEVFGEFGSGKSQISHELAVTVQLPPEKGGLDGECVFIDTENTFRPERIEQIANGFELDIDEVLQKIHVARAFNSSHQ----ILMAEKINELIQQGNNIKLVIVDSLMAHFRAEYVGRESLAVRQQKLNQHLHALQQIANTYNVAVFITNQVQAKP--DSFFGSPTK 260          

HSP 2 Score: 31.187 bits (69), Expect = 1.487e-29
Identity = 20/57 (35.09%), Postives = 26/57 (45.61%), Query Frame = 1
Query:  244 KKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYITGSDALLR 414
            +KL+DAG      L   T K L+    + E   EK+ EAA K     + T  D L R
Sbjct:   16 EKLRDAGFADMMRLATATPKELSVKAEIGEGVAEKVIEAARKSEKIDFETAYDVLER 72          
BLAST of DY260712 vs. ExPASy Swiss-Prot
Match: RADA_METJA (DNA repair and recombination protein radA OS=Methanocaldococcus jannaschii GN=radA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.265e-29
Identity = 69/168 (41.07%), Postives = 94/168 (55.95%), Query Frame = 3
Query:  417 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNG---------KVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE-EPFRLLIVDSVIALFRVDFTGRGEPAERQQNWGKCSPR*QKISEGINVAV*RTNQFKADP 890
            G+E+ ++TE  G F SGKTQ+AH  CV  Q P  +   +          K  YIDTEGTFRP+RIV +AE  G+D   VL+NI  ARAY  + Q      +   + E    +L+IVDS+ + FR ++ GRG+ AERQQ  G+      K+++  N  V  TNQ  A P
Sbjct:  125 GLESQSVTEFAGMFGSGKTQIAHQACVNLQCPERIVADDAIKDEILNEPKAVYIDTEGTFRPERIVQMAEALGLDGNEVLNNIFVARAYNSDMQMLYAENVENLIREGHNIKLVIVDSLTSTFRTEYIGRGKLAERQQKLGRHMATLNKLADIYNCVVIVTNQVAARP 292          

HSP 2 Score: 36.1946 bits (82), Expect = 4.265e-29
Identity = 19/62 (30.65%), Postives = 33/62 (53.23%), Query Frame = 1
Query:  223 GINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYITGSDAL 408
            G+     +KL++AG      +   +   LT I G+SE    +I EAA ++ N G+ +G++ L
Sbjct:   41 GVGPTTAEKLKEAGYTDFMKIATASIGELTEIDGISEKAAARIIEAARELCNLGFKSGTEVL 102          
BLAST of DY260712 vs. ExPASy Swiss-Prot
Match: RADA_METTH (DNA repair and recombination protein radA OS=Methanobacterium thermoautotrophicum GN=radA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 4.274e-29
Identity = 77/174 (44.25%), Postives = 99/174 (56.90%), Query Frame = 3
Query:  417 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE-----EPFRLLIVDSVIALFRVDFTGRGEPAERQQNWGKCSPR*QKISEGINVAV*RTNQFKADPGGGGFLSNPKK 923
            GIET AITE FGEF SGK+QL+H L V  QLP    G + +  +IDTE TFRP+RI  IA  F +D   VL+ I  ARA+   HQ    + +A K++E     +  RL+IVDS+ A FR ++ GR   A RQQ   +     Q I+   N AV  TNQ +A P    F  +P K
Sbjct:   93 GIETQAITEVFGEFGSGKSQLSHELAVTVQLPEERGGLDAEAVFIDTENTFRPERIEQIANAFELDLEEVLNKIHIARAFNSSHQ----ILMAEKVNELIQEGKNIRLVIVDSLTAHFRAEYVGREALATRQQKLNQHLHTLQNIANTYNAAVFVTNQVQARP--DAFFGSPTK 260          

HSP 2 Score: 30.8018 bits (68), Expect = 4.274e-29
Identity = 19/63 (30.16%), Postives = 28/63 (44.44%), Query Frame = 1
Query:  226 INAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYITGSDALLR 414
            + A   +KL+DAG      L   T K L+    + E   EK+ EAA +     + T  D + R
Sbjct:   10 VGAKTAQKLRDAGFGDMMRLATATAKELSVKAEIGEGVAEKVIEAARRAEKIDFETAFDVMER 72          
The following BLAST results are available for this feature:
BLAST of DY260712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
RADA_THENV7.392e-3348.24DNA repair and recombination protein radA OS=Therm... [more]
RADA_PYRIL7.392e-3348.82DNA repair and recombination protein radA OS=Pyrob... [more]
RADA_PYRAR2.151e-3247.06DNA repair and recombination protein radA OS=Pyrob... [more]
RADA_NANEQ1.067e-3146.34DNA repair and recombination protein radA OS=Nanoa... [more]
RADA_DESK14.484e-3046.20DNA repair and recombination protein radA OS=Desul... [more]
RADA_DESAM4.484e-3046.20DNA repair and recombination protein radA OS=Desul... [more]
RADA_ARCFU9.990e-3046.29DNA repair and recombination protein radA OS=Archa... [more]
RADA_METS31.487e-2943.68DNA repair and recombination protein radA OS=Metha... [more]
RADA_METJA4.265e-2941.07DNA repair and recombination protein radA OS=Metha... [more]
RADA_METTH4.274e-2944.25DNA repair and recombination protein radA OS=Metha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP13YG03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260712 ID=DY260712; Name=DY260712; organism=Citrus clementina; type=EST; length=942bp
CAAAATAACAACTCACAAATCAAAATTCAAAATCTCTCTCTCTCTGTCTC
AAAGAGAAACAAACACTAAAAAGCAAATTAACAATAATTTTTCTCTACTT
AAAATACGAAGATGATTGCGACTCTCAAAGCCGAAGAACAAAGCCAGTTA
CAGCTTGTGGAGCGAGAAGACATAGACGACGAAGAAGACTTGTTTGAAGC
GATTGATAAACTGATTTCTCAAGGAATCAATGCTGGAGATGTGAAGAAGC
TTCAGGATGCAGGGATATACACCTGCAATGGCTTGATGATGCACACCAAG
AAGCACTTGACTGGAATCAAAGGATTATCAGAGGCAAAGGTTGAAAAGAT
CTGTGAAGCTGCTGAAAAGATAGTGAATTTTGGATATATTACAGGAAGTG
ATGCTCTGCTCCGAGTGGGATTGAGACTGGAGCCATCACAGAAGCTTTTG
GGGAGTTCCGGTCTGGGAAAACACAGCTTGCTCATACCCTATGCGTTTGC
ACGCAGCTTCCTACAAATATGCGGGGTGGGAATGGGAAGGTTGCTTACAT
TGACACTGAAGGAACTTTCCGCCCTGATAGGATTGTACCCATAGCTGAAA
GATTTGGAATGGACCCAGGAGCTGTCCTTGACAATATCATTTATGCTCGT
GCGTACACATATGAGCATCAGTACAACCTACTTCTTGGTCTGGCAGCAAA
AATGTCTGAAGAACCATTCAGACTTCTGATTGTGGATTCAGTGATTGCCC
TCTTTCGAGTAGATTTCACAGGAAGAGGAGAACCTGCCGAACGACAGCAA
AATTGGGGAAAATGCTCTCCCCGATAACAAAAGATATCTGAAGGAATCAA
TGTTGCGGTCTAAAGGACCAACCAGTTTAAAGCCGACCCCGGTGGGGGGG
GTTTCCTATCAAATCCAAAGAAACCGGGCAGGAAGGGCTGGG
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