DY260712
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY260712 vs. ExPASy Swiss-Prot
Match: RADA_THENV (DNA repair and recombination protein radA OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=radA PE=3 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 7.392e-33 Identity = 82/170 (48.24%), Postives = 102/170 (60.00%), Query Frame = 3 Query: 417 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGEPAERQQNWGKCSPR*QKISEGINVAV*RTNQFKADPGGGGFLSNPKKP 926 GIET A+TE GEF SGKTQL H L V QLP G K YIDTE TFRP+RI+ IA+ G+DP L+NI YARAY+ +HQ L+ + + + LL+VDSVIA FR +F GR AERQQ K ++++ +VAV TNQ A P F NP +P Sbjct: 113 GIETRAVTEVAGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSSDHQMILVDQAKSIIKQNNVALLVVDSVIAHFRSEFPGRENLAERQQKLNKHVADLLRLADAYDVAVVITNQVMAQP--DVFFGNPLRP 280
BLAST of DY260712 vs. ExPASy Swiss-Prot
Match: RADA_PYRIL (DNA repair and recombination protein radA OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=radA PE=3 SV=2) HSP 1 Score: 141.354 bits (355), Expect = 7.392e-33 Identity = 83/170 (48.82%), Postives = 102/170 (60.00%), Query Frame = 3 Query: 417 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGEPAERQQNWGKCSPR*QKISEGINVAV*RTNQFKADPGGGGFLSNPKKP 926 GIET A+TE GEF SGKTQL H L V QLP G K YIDTE TFRP+RI+ IA+ G+DP L+NI YARAY+ +HQ L+ + + + LLIVDSVIA FR +F GR AERQQ K ++++ +VAV TNQ A P F NP +P Sbjct: 113 GIETRAVTEVAGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSSDHQMILVDQAKSIIRQHNVALLIVDSVIAHFRSEFPGRENLAERQQKLNKHVADLLRLADAYDVAVVITNQVMAQP--DVFFGNPLRP 280
BLAST of DY260712 vs. ExPASy Swiss-Prot
Match: RADA_PYRAR (DNA repair and recombination protein radA OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=radA PE=3 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 2.151e-32 Identity = 80/170 (47.06%), Postives = 101/170 (59.41%), Query Frame = 3 Query: 417 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGEPAERQQNWGKCSPR*QKISEGINVAV*RTNQFKADPGGGGFLSNPKKP 926 GIET A+TE GEF SGKTQL H L V QLP G K YIDTE TFRP+RI+ +A G+DP L+NI YARAY+ +HQ L+ + + + L++VDSVIA FR +F GR AERQQ K ++++ +VAV TNQ A P F NP +P Sbjct: 116 GIETRAVTEVVGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAIYIDTENTFRPERIMQMARARGLDPDQALNNIFYARAYSSDHQMILVEHAKSIVKQHNVALIVVDSVIAHFRSEFPGRENLAERQQKLNKHVADLLRLADAYDVAVVITNQVMAQP--DVFFGNPLRP 283
BLAST of DY260712 vs. ExPASy Swiss-Prot
Match: RADA_NANEQ (DNA repair and recombination protein radA OS=Nanoarchaeum equitans GN=radA PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 1.067e-31 Identity = 76/164 (46.34%), Postives = 101/164 (61.59%), Query Frame = 3 Query: 417 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE------EPFRLLIVDSVIALFRVDFTGRGEPAERQQNWGKCSPR*QKISEGINVAV*RTNQFKADP 890 GIET A+TE +GE+ SGKTQ+ H L V QLP G GK YIDTEGTFRP+RI +AE +DP L N+ + + + +HQ LAA+ +E EP +L++VDS+ ALFR ++TGRG+ AERQ G+ +I+E NVA+ TNQ A P Sbjct: 103 GIETAALTEFYGEYGSGKTQVGHQLAVDVQLPPEQGGLEGKAVYIDTEGTFRPERIKQMAEALDLDPKKALKNVYHMKVFNTDHQM-----LAARKAEELIRKGEPIKLIVVDSLTALFRAEYTGRGQLAERQHKLGRHVHDLLRIAELYNVAIYVTNQVMAKP 261
BLAST of DY260712 vs. ExPASy Swiss-Prot
Match: RADA_DESK1 (DNA repair and recombination protein radA OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=radA PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 4.484e-30 Identity = 73/158 (46.20%), Postives = 95/158 (60.13%), Query Frame = 3 Query: 417 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGEPAERQQNWGKCSPR*QKISEGINVAV*RTNQFKADP 890 G+ET ITE FGE+ SGKTQ+ H L V QL G NG+ YIDTEGTFR +RI +A G+DP V+DNI Y RAY +HQ ++ L + + RL+I+DSV + FR ++ GR AERQQ + +++E NVAV TNQ A P Sbjct: 107 GVETKTITEFFGEYGSGKTQICHQLSVNVQLTPEKGGLNGRAVYIDTEGTFRWERIEAMARALGLDPDKVMDNIYYMRAYNSDHQIAIVDELFTFVPKNDVRLVILDSVTSHFRAEYPGREHLAERQQKLNSHLHQLMRLAEAYNVAVVVTNQVMARP 264
BLAST of DY260712 vs. ExPASy Swiss-Prot
Match: RADA_DESAM (DNA repair and recombination protein radA OS=Desulfurococcus amylolyticus GN=radA PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 4.484e-30 Identity = 73/158 (46.20%), Postives = 95/158 (60.13%), Query Frame = 3 Query: 417 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGEPAERQQNWGKCSPR*QKISEGINVAV*RTNQFKADP 890 G+ET ITE FGE+ SGKTQ+ H L V QL G NG+ YIDTEGTFR +RI +A G+DP V+DNI Y RAY +HQ ++ L + + RL+I+DSV + FR ++ GR AERQQ + +++E NVAV TNQ A P Sbjct: 107 GVETKTITEFFGEYGSGKTQICHQLSVNVQLTPEKGGLNGRAVYIDTEGTFRWERIEAMARALGLDPDKVMDNIYYMRAYNSDHQIAIVDELFTFVPKNDVRLVILDSVTSHFRAEYPGREHLAERQQKLNSHLHQLMRLAEAYNVAVVVTNQVMARP 264
BLAST of DY260712 vs. ExPASy Swiss-Prot
Match: RADA_ARCFU (DNA repair and recombination protein radA OS=Archaeoglobus fulgidus GN=radA PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 9.990e-30 Identity = 81/175 (46.29%), Postives = 102/175 (58.29%), Query Frame = 3 Query: 417 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLL---LGLAAKMSEE--PFRLLIVDSVIALFRVDFTGRGEPAERQQNWGKCSPR*QKISEGINVAV*RTNQFKADPGGGGFLSNPKKP 926 G+ET AITE FGEF SGKTQ+ H L V QLP + G G V IDTE TFRP+RI+ +AE G+D VL NI A+AY HQ L+ LA K+ +E P RL+IVDS+++ FR ++ GRG A+RQQ + K E N A+ TNQ A P +P KP Sbjct: 104 GVETQAITEFFGEFGSGKTQICHQLAVNVQLPEDEGGLEGSVIIIDTENTFRPERIIQMAEAKGLDGNEVLKNIYVAQAYNSNHQMLLVDNAKELAEKLKKEGRPVRLIIVDSLMSHFRAEYVGRGTLADRQQKLNRHLHDLMKFGELYNAAIVVTNQVMARP--DVLFGDPTKP 276
BLAST of DY260712 vs. ExPASy Swiss-Prot
Match: RADA_METS3 (DNA repair and recombination protein radA OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=radA PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.487e-29 Identity = 76/174 (43.68%), Postives = 101/174 (58.05%), Query Frame = 3 Query: 417 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE-----EPFRLLIVDSVIALFRVDFTGRGEPAERQQNWGKCSPR*QKISEGINVAV*RTNQFKADPGGGGFLSNPKK 923 GIET +ITE FGEF SGK+Q++H L V QLP G +G+ +IDTE TFRP+RI IA F +D VL I ARA+ HQ + +A K++E +L+IVDS++A FR ++ GR A RQQ + Q+I+ NVAV TNQ +A P F +P K Sbjct: 93 GIETQSITEVFGEFGSGKSQISHELAVTVQLPPEKGGLDGECVFIDTENTFRPERIEQIANGFELDIDEVLQKIHVARAFNSSHQ----ILMAEKINELIQQGNNIKLVIVDSLMAHFRAEYVGRESLAVRQQKLNQHLHALQQIANTYNVAVFITNQVQAKP--DSFFGSPTK 260 HSP 2 Score: 31.187 bits (69), Expect = 1.487e-29 Identity = 20/57 (35.09%), Postives = 26/57 (45.61%), Query Frame = 1 Query: 244 KKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYITGSDALLR 414 +KL+DAG L T K L+ + E EK+ EAA K + T D L R Sbjct: 16 EKLRDAGFADMMRLATATPKELSVKAEIGEGVAEKVIEAARKSEKIDFETAYDVLER 72
BLAST of DY260712 vs. ExPASy Swiss-Prot
Match: RADA_METJA (DNA repair and recombination protein radA OS=Methanocaldococcus jannaschii GN=radA PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 4.265e-29 Identity = 69/168 (41.07%), Postives = 94/168 (55.95%), Query Frame = 3 Query: 417 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNG---------KVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE-EPFRLLIVDSVIALFRVDFTGRGEPAERQQNWGKCSPR*QKISEGINVAV*RTNQFKADP 890 G+E+ ++TE G F SGKTQ+AH CV Q P + + K YIDTEGTFRP+RIV +AE G+D VL+NI ARAY + Q + + E +L+IVDS+ + FR ++ GRG+ AERQQ G+ K+++ N V TNQ A P Sbjct: 125 GLESQSVTEFAGMFGSGKTQIAHQACVNLQCPERIVADDAIKDEILNEPKAVYIDTEGTFRPERIVQMAEALGLDGNEVLNNIFVARAYNSDMQMLYAENVENLIREGHNIKLVIVDSLTSTFRTEYIGRGKLAERQQKLGRHMATLNKLADIYNCVVIVTNQVAARP 292 HSP 2 Score: 36.1946 bits (82), Expect = 4.265e-29 Identity = 19/62 (30.65%), Postives = 33/62 (53.23%), Query Frame = 1 Query: 223 GINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYITGSDAL 408 G+ +KL++AG + + LT I G+SE +I EAA ++ N G+ +G++ L Sbjct: 41 GVGPTTAEKLKEAGYTDFMKIATASIGELTEIDGISEKAAARIIEAARELCNLGFKSGTEVL 102
BLAST of DY260712 vs. ExPASy Swiss-Prot
Match: RADA_METTH (DNA repair and recombination protein radA OS=Methanobacterium thermoautotrophicum GN=radA PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 4.274e-29 Identity = 77/174 (44.25%), Postives = 99/174 (56.90%), Query Frame = 3 Query: 417 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE-----EPFRLLIVDSVIALFRVDFTGRGEPAERQQNWGKCSPR*QKISEGINVAV*RTNQFKADPGGGGFLSNPKK 923 GIET AITE FGEF SGK+QL+H L V QLP G + + +IDTE TFRP+RI IA F +D VL+ I ARA+ HQ + +A K++E + RL+IVDS+ A FR ++ GR A RQQ + Q I+ N AV TNQ +A P F +P K Sbjct: 93 GIETQAITEVFGEFGSGKSQLSHELAVTVQLPEERGGLDAEAVFIDTENTFRPERIEQIANAFELDLEEVLNKIHIARAFNSSHQ----ILMAEKVNELIQEGKNIRLVIVDSLTAHFRAEYVGREALATRQQKLNQHLHTLQNIANTYNAAVFVTNQVQARP--DAFFGSPTK 260 HSP 2 Score: 30.8018 bits (68), Expect = 4.274e-29 Identity = 19/63 (30.16%), Postives = 28/63 (44.44%), Query Frame = 1 Query: 226 INAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYITGSDALLR 414 + A +KL+DAG L T K L+ + E EK+ EAA + + T D + R Sbjct: 10 VGAKTAQKLRDAGFGDMMRLATATAKELSVKAEIGEGVAEKVIEAARRAEKIDFETAFDVMER 72 The following BLAST results are available for this feature:
BLAST of DY260712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 76
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Sequences
The
following sequences are available for this feature:
EST sequence >DY260712 ID=DY260712; Name=DY260712; organism=Citrus clementina; type=EST; length=942bpback to top |