DY260760

Overview
NameDY260760
Unique NameDY260760
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length980
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SEC24_CRYNE (Protein transport protein SEC24 OS=Cryptococcus neoformans GN=SEC24 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.880e-26
Identity = 64/160 (40.00%), Postives = 91/160 (56.88%), Query Frame = 1
Query:   16 RCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLPEGP-RTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIV 492
            RC RC+AYINPF+ FI+ G R+ C +CG ++E P+ +  +              EL    VEFVA  EYMVR P P V+ F+IDVS  A+Q+G  A A   I + +  LP    RT V I    +++HF++L     +  ML+VPD+ DV+ P   D++V
Sbjct:  247 RCRRCRAYINPFVTFIEGGNRWKCCMCGLSNEVPQLFDWD-QRAEKPADRWARKELNHAVVEFVAPTEYMVRPPQPPVYAFVIDVSSAAIQSGMVAVAARTILESLDSLPNADNRTKVAIIAVSTSLHFFSLPADATEAGMLVVPDLTDVFLPKPVDLLV 405          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SC24D_HUMAN (Protein transport protein Sec24D OS=Homo sapiens GN=SEC24D PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 3.207e-26
Identity = 61/171 (35.67%), Postives = 92/171 (53.80%), Query Frame = 1
Query:    1 DMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEY--MVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLP-----EGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIV 492
            + GPVRC+RCKAY+ PFM+FI+ GRR+ C  C   ++ P  Y  +L             EL  G+ E+VAT +Y    + P P  F F+IDVS + ++ G     C  +  ++  +P     E     VG  T++  +HF+N+K  L QP M++V DV +V+ PL    +V
Sbjct:  357 ESGPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPFYFQHLDHIGRRLDHYEKPELSLGSYEYVATLDYCRKSKPPNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVVTDVGEVFVPLLDGFLV 527          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SEC24_USTMA (Protein transport protein SEC24 OS=Ustilago maydis GN=SEC24 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.079e-25
Identity = 59/160 (36.88%), Postives = 91/160 (56.88%), Query Frame = 1
Query:   16 RCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLPEGP-RTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIV 492
            RC RC+ YINP++ FI+ G R+ C +C  ++E P+ +  N              EL    VEF+A +EYMVR P P V+ FLIDVS  A+ +G  A A   I + +  LP    R  + I   D+++HF+++     +P ML+V D++DV+ P  +D++V
Sbjct:  322 RCRRCRTYINPYVTFIENGNRWKCCMCNISNEVPQLFDWN-SETNQPADRWQRPELNHSVVEFIAPREYMVRPPQPPVYTFLIDVSYQAVNSGMVATAARTILETLDRLPNSDNRAKICIIGVDTSLHFFSITPEGTEPDMLVVSDLDDVFLPKPNDLLV 480          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SEC24_EMENI (Protein transport protein sec24 OS=Emericella nidulans GN=sec24 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.715e-25
Identity = 62/200 (31.00%), Postives = 107/200 (53.50%), Query Frame = 1
Query:   16 RCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLPEGP-RTMVGIATFDSTIHFYNLKR---ALQQPLMLIVPDVEDVYTPLQSDIIVPGFRVPVNNLKIMLENISSTAQNHKLPRQPSGSLIQS 603
            RC RC++YINPF+ F+D G R+ C++C  T++ P+ +  +              +L    VEFVA +EYMVR P P V+ FLIDVS  ++  G  A +   I + +  +P    RT +G    DS++H++++ R       P ML+V D+++ + P+  D++V        N+++ L+ +    QN +      GS +++
Sbjct:  232 RCRRCRSYINPFVTFLDHGHRWRCNMCNLTNDVPQAFDWD-ATLQKPADRALRPDLNHAVVEFVAPQEYMVRPPQPLVYLFLIDVSYASVTNGLLATSARCIKESLDRIPNADRRTRLGFIAVDSSLHYFSIPRDGSETSDPRMLVVSDLDEPFLPIPGDLLVT-LSECRENIEVFLDKLQEMFQNTQNNSCAMGSALRA 429          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SEC24_ASPNC (Protein transport protein sec24 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sec24 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.546e-25
Identity = 62/200 (31.00%), Postives = 107/200 (53.50%), Query Frame = 1
Query:   16 RCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLPEGP-RTMVGIATFDSTIHFYNLKR---ALQQPLMLIVPDVEDVYTPLQSDIIVPGFRVPVNNLKIMLENISSTAQNHKLPRQPSGSLIQS 603
            RC RC++YINPF+ F+D G R+ C++C  T++ P+ +  +              +L    VEFVA +EYMVR P P V+ FLIDVS  ++  G  A     I + +  +P    RT +G    DS++H++++ R      +P ML++ D+++ + P+  D++V        N++I L+ +    QN +      GS +++
Sbjct:  243 RCRRCRSYINPFVTFLDHGHRWRCNMCNLTNDVPQAFDWD-TALQKPADRSLRPDLNHSVVEFVAPQEYMVRPPQPLVYLFLIDVSYASVTNGLLATTARCIRESLDRIPNADRRTRLGFIAVDSSLHYFSIPRDGSENSEPRMLVISDLDEPFLPIPGDLLVT-LSECRENIEIFLDKLQEMFQNTQSNACAMGSALRA 440          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SEC24_ASPCL (Protein transport protein sec24 OS=Aspergillus clavatus GN=sec24 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.032e-24
Identity = 61/186 (32.80%), Postives = 100/186 (53.76%), Query Frame = 1
Query:   16 RCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLPEGP-RTMVGIATFDSTIHFYNLKR---ALQQPLMLIVPDVEDVYTPLQSDIIVPGFRVPVNNLKIMLENISSTAQN 561
            RC RC++YINPF+ F+D G R+ C++C  T++ P+ +  +              +L    VEFVA +EYMVR P P V+ FLIDVS  ++  G  A +   I + +  +P    RT +G    DS++H++++ R       P ML+V D+E+ + P+  D++V        N++  L+ +    QN
Sbjct:  243 RCRRCRSYINPFVTFMDHGHRWRCNMCNLTNDVPQAFDWD-SALQKPADRSLRPDLNHAVVEFVAPQEYMVRPPQPLVYLFLIDVSYASVTNGLLATSARCIKESLDRIPNADRRTRLGFIAVDSSLHYFSIPRDGSENSDPRMLVVSDLEEPFLPIPGDLLVT-LSECRENIETFLDKLQEMFQN 426          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SEC24_NEUCR (Protein transport protein sec-24 OS=Neurospora crassa GN=sec-24 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.760e-24
Identity = 57/164 (34.76%), Postives = 93/164 (56.71%), Query Frame = 1
Query:   16 RCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLPEGP-RTMVGIATFDSTIHFYNLKRALQ---QPLMLIVPDVEDVYTPLQSDIIVP 495
            RC RC++YINPF+ F+D G R+ C++C  T++ P+ +  +              EL    VEFVA +EYMVR P P V+ FL DVS  A+ TG  A +   I   +  +P    RT +G    DS++H++++ R  +   +  ML+V D+++ + P+  +++VP
Sbjct:  273 RCRRCRSYINPFVTFLDHGHRWRCNMCNLTNDVPQAFDWDAAAQKSVDRWQRP-ELNHAVVEFVAPQEYMVRPPQPLVYLFLFDVSYAAVSTGLLATSARTILDSLDRIPNADRRTRLGFIAVDSSLHYFSVPRDTEENGETSMLVVSDLDEPFLPVPGELLVP 435          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SEC24_ASPOR (Protein transport protein sec24 OS=Aspergillus oryzae GN=sec24 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.760e-24
Identity = 60/186 (32.26%), Postives = 100/186 (53.76%), Query Frame = 1
Query:   16 RCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLPEGP-RTMVGIATFDSTIHFYNLKR---ALQQPLMLIVPDVEDVYTPLQSDIIVPGFRVPVNNLKIMLENISSTAQN 561
            RC RC++YINPF+ F+D G R+ C++C  T++ P+ +  +              +L    VEFVA +EYMVR P P V+ FLIDVS  ++  G  A +   I + +  +P    RT +G    DS++H++++ R       P ML+V D+++ + P+  D++V        N++  L+ +    QN
Sbjct:  237 RCRRCRSYINPFVTFLDHGHRWRCNMCNLTNDVPQAFDWD-TTLQRPADRALRPDLNHAVVEFVAPQEYMVRPPQPLVYLFLIDVSYASVTNGLLATSARCIKESLERIPNADRRTRLGFIAVDSSLHYFSIPRDGSENSDPRMLVVSDLDEPFLPIPGDLLVT-LSECRENIETFLDKLQEMFQN 420          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SEC24_NEOFI (Protein transport protein SEC24 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sec24 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.299e-24
Identity = 59/186 (31.72%), Postives = 100/186 (53.76%), Query Frame = 1
Query:   16 RCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLPEGP-RTMVGIATFDSTIHFYNLKR---ALQQPLMLIVPDVEDVYTPLQSDIIVPGFRVPVNNLKIMLENISSTAQN 561
            RC RC++YINPF+ F+D G R+ C++C  T++ P+ +  +              +L    VEFVA +EYMVR P P V+ FLIDVS  ++  G  A +   I + +  +P    RT +G    DS++H++++ R       P ML++ D+++ + P+  D++V        N++  L+ +    QN
Sbjct:  243 RCRRCRSYINPFVTFLDHGHRWRCNMCNLTNDVPQAFDWD-AALQKPADRSLRPDLNHAVVEFVAPQEYMVRPPQPLVYLFLIDVSYASVTNGLLATSARCIKESLDRIPNADRRTRLGFIAVDSSLHYFSIPRDGSENSDPRMLVISDLDEPFLPIPGDLLVT-LSECRENIETFLDKLQEMFQN 426          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SEC24_ASPTN (Protein transport protein sec24 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=sec24 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.299e-24
Identity = 60/186 (32.26%), Postives = 100/186 (53.76%), Query Frame = 1
Query:   16 RCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLPEGP-RTMVGIATFDSTIHFYNLKR---ALQQPLMLIVPDVEDVYTPLQSDIIVPGFRVPVNNLKIMLENISSTAQN 561
            RC RC++YINPF+ F+D G R+ C++C  T++ P+ +  +              +L    VEFVA +EYMVR P P V+ FLIDVS  ++  G  A +   I + +  +P    RT +G    DS++H++++ R       P ML+V D+++ + P+  D++V        N++  L+ +    QN
Sbjct:  228 RCRRCRSYINPFVTFLDHGHRWRCNMCNLTNDVPQAFDWD-TALQKPADRSLRPDLNHSVVEFVAPQEYMVRPPQPLVYLFLIDVSYASVTNGLLATSARCIKESLDRIPNADRRTRLGFIAVDSSLHYFSIPRDGSENSNPQMLVVSDLDEPFLPIPGDLLVT-LSECRENIESFLDKLQEMFQN 411          
The following BLAST results are available for this feature:
BLAST of DY260760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
SEC24_CRYNE1.880e-2640.00Protein transport protein SEC24 OS=Cryptococcus ne... [more]
SC24D_HUMAN3.207e-2635.67Protein transport protein Sec24D OS=Homo sapiens G... [more]
SEC24_USTMA2.079e-2536.88Protein transport protein SEC24 OS=Ustilago maydis... [more]
SEC24_EMENI2.715e-2531.00Protein transport protein sec24 OS=Emericella nidu... [more]
SEC24_ASPNC3.546e-2531.00Protein transport protein sec24 OS=Aspergillus nig... [more]
SEC24_ASPCL1.032e-2432.80Protein transport protein sec24 OS=Aspergillus cla... [more]
SEC24_NEUCR1.760e-2434.76Protein transport protein sec-24 OS=Neurospora cra... [more]
SEC24_ASPOR1.760e-2432.26Protein transport protein sec24 OS=Aspergillus ory... [more]
SEC24_NEOFI2.299e-2431.72Protein transport protein SEC24 OS=Neosartorya fis... [more]
SEC24_ASPTN2.299e-2432.26Protein transport protein sec24 OS=Aspergillus ter... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP13YI04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260760 ID=DY260760; Name=DY260760; organism=Citrus clementina; type=EST; length=980bp
GACATGGGTCCTGTTCGATGTTCTCGCTGCAAAGCCTACATAAATCCTTT
CATGAAGTTCATTGATCAGGGAAGGAGGTTCATCTGCAGTTTATGTGGTT
TTACCGATGAGACTCCCCGTGATTATCACTGCAATCTAGGTCCAGATGGT
AGGCGTAGAGATGCTGATGACAGGCCCGAGCTATGTAGGGGGACGGTTGA
ATTTGTTGCCACAAAGGAATATATGGTTCGTGATCCCATGCCGGCTGTGT
TTTTCTTCCTTATTGATGTATCCATGAATGCCTTACAGACTGGTGCGACT
GCCGCAGCTTGCAGTGCAATCAGTCAAGTTGTTTCAGATCTGCCTGAAGG
TCCTCGAACAATGGTGGGAATTGCAACATTTGACTCCACAATCCATTTCT
ACAATTTGAAACGTGCGCTACAGCAGCCATTGATGCTCATTGTCCCTGAT
GTAGAAGATGTTTATACTCCTTTACAATCTGATATTATTGTTCCAGGTTT
CCGAGTGCCTGTCAACAATTTAAAGATAATGCTGGAAAACATTTCTAGCA
CGGCACAAAACCACAAATTGCCGAGACAACCTTCGGGGAGTCTAATCCAA
AGTAACTTATAGTGAGCTCTAAATAATGAATGTGGGCAACCATCAGAACT
TTTGATTATGCAGATCTGTATTCTAAAAGTCATTCACGATATTCCTAAAA
AGGTTAAAAAAAATAACATAATATTTTTCATGCAAAAAAAGCCAAACCCA
CAAATCACCACTAAACCACAAATAAACAAACAACAGAACACGTCATATAT
TATGCTCTAATTATAAACTCTCGTTTATGATTTCTTACTCACTATACATA
ACTTGCCACTATTATAATACAGAATTTTACACCATGCCACCCCACGTAAT
ATCAGTCAGGATCATTAGAAAATAAAAATAATCATTGACATATACATCTA
GCAAAACATCATAGCCATTATACTATTACG
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