DY260760

Overview
NameDY260760
Unique NameDY260760
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length980
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SEC24_ASPFU (Protein transport protein sec24 OS=Aspergillus fumigatus GN=sec24 PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 2.299e-24
Identity = 59/186 (31.72%), Postives = 100/186 (53.76%), Query Frame = 1
Query:   16 RCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLPEGP-RTMVGIATFDSTIHFYNLKR---ALQQPLMLIVPDVEDVYTPLQSDIIVPGFRVPVNNLKIMLENISSTAQN 561
            RC RC++YINPF+ F+D G R+ C++C  T++ P+ +  +              +L    VEFVA +EYMVR P P V+ FLIDVS  ++  G  A +   I + +  +P    RT +G    DS++H++++ R       P ML++ D+++ + P+  D++V        N++  L+ +    QN
Sbjct:  243 RCRRCRSYINPFVTFLDHGHRWRCNMCNLTNDVPQAFDWD-AALQKPADRSLRPDLNHAVVEFVAPQEYMVRPPQPLVYLFLIDVSYASVTNGLLATSARCIKESLDRIPNADRRTRLGFIAVDSSLHYFSIPRDGSENSDPRMLVISDLDEPFLPIPGDLLVT-LSECRENIETFLDKLQEMFQN 426          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SEC24_PICPA (Protein transport protein SEC24 OS=Pichia pastoris GN=SEC24 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.921e-24
Identity = 64/203 (31.53%), Postives = 105/203 (51.72%), Query Frame = 1
Query:   16 RCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLP-EGPRTMVGIATFDSTIHFYNL------KRALQQPLMLIVPDVEDVYTPLQSDIIVPGFRVPVNNLKIMLENISSTAQNHKLPRQPSGSLIQS 603
            RC RC++YINP + F+D+  ++ C+LC  T++ P  +  +              EL    VEFVA KEYMVR P P V+ F++DVS +A+Q G  A     I   +  +P +  R  VG    DS++HF+ +      +   Q+  ML+V D++DV  P   +++ P  +    N++ +L N  S  +N+  P    G  +++
Sbjct:  253 RCRRCRSYINPLITFVDRNTKWRCNLCNLTNDVPSGFDFD-KDTQQRVDRMARVELNYSVVEFVAPKEYMVRLPQPLVYLFVLDVSTHAIQNGYLATVARTILDSLDQIPNKDGRARVGFIGVDSSLHFFTIPQDSEDENDAQETSMLVVSDLDDVIVPAAENLLAP-LQQSRQNIENLLNNFHSYFENNVNPNFALGPALKA 453          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SEC24_CHAGB (Protein transport protein SEC24 OS=Chaetomium globosum GN=SEC24 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.921e-24
Identity = 61/189 (32.28%), Postives = 102/189 (53.97%), Query Frame = 1
Query:   16 RCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLPEGP-RTMVGIATFDSTIHFYNLKRALQ---QPLMLIVPDVEDVYTPLQSDIIVP--GFRVPVNNLKIMLENISSTAQNH 564
            RC RC++YINPF+ F+D G R+ C++C  T++ P+ +  +              EL    VEFVA +EYMVR P P V+ FL DVS  A+ TG  A +   I   ++ +P    RT +G    DS++H++++ +      +  ML+V D+++ + P+  +++VP    R  + N    L  + +  QN+
Sbjct:  270 RCRRCRSYINPFVTFLDHGHRWRCNMCNLTNDVPQAFDWDAAAQKTVDRWQRH-ELNHAVVEFVAPQEYMVRPPQPLVYLFLFDVSYAAVSTGLLATSARTILDSLNRIPNADRRTRLGFIAVDSSLHYFSVPKDSDENGETSMLVVSDLDEPFLPVPQELLVPLTECRNSIENFLTKLPEMFANNQNN 457          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SEC24_PODAN (Protein transport protein SEC24 OS=Podospora anserina GN=SEC24 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.490e-23
Identity = 55/164 (33.54%), Postives = 92/164 (56.10%), Query Frame = 1
Query:   16 RCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLPEGP-RTMVGIATFDSTIHFYNLKRALQ---QPLMLIVPDVEDVYTPLQSDIIVP 495
            RC RC++YINPF+ F+D G R+ C++C  T++ P+ +  +              EL    VEFVA +EYMVR P P V+ FL DVS  ++ +G  A A   I   +  +P    RT +G    DS++H++++ +      +  ML+V D+++ + P+  +++VP
Sbjct:  269 RCRRCRSYINPFVTFLDHGHRWRCNMCNLTNDVPQAFDWDAAAQKSVDRWQRH-ELNHAVVEFVAPQEYMVRPPQPLVYLFLFDVSYASVSSGLLATAARTIEASLDRIPNADRRTRLGFMAVDSSLHYFSVPKDTDENGETSMLVVSDLDEPFLPVPGELLVP 431          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SEC24_SCHPO (Protein transport protein sec24 OS=Schizosaccharomyces pombe GN=sec24 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.541e-23
Identity = 57/161 (35.40%), Postives = 87/161 (54.04%), Query Frame = 1
Query:   16 RCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLP--EGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIV 492
            RC RC+ YINPF  FID G R+ C+ CG  +E P+ Y  +              EL    V+F+A +EYMVR P P V+ FLID+S  ++ +G    A  AI + +  +P  EG R  V     DS +HF+++    ++   L+V D+E+ + P   D+++
Sbjct:  255 RCRRCRMYINPFSIFIDNGHRYRCNSCGIVNEVPQSYDWD-SFRNVQRDRWQRPELNYAVVDFIAPQEYMVRAPQPLVYVFLIDISFVSISSGMVGTASRAILESLDRIPNKEG-RAKVAFIGVDSALHFFSVSPGAEEATQLVVSDLEEPFLPRNQDLLL 413          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SEC24_YARLI (Protein transport protein SEC24 OS=Yarrowia lipolytica GN=SEC24 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.335e-23
Identity = 56/175 (32.00%), Postives = 95/175 (54.29%), Query Frame = 1
Query:   16 RCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLPE-GPRTMVGIATFDSTIHFYNLKR---------------ALQQPLMLIVPDVEDVYTPLQSDIIV 492
            RC RC++YINP++ F++ G R+ C++C  T++ P  +  +              EL    VEFVA  EYMVR P P V+ F++DVS+++++ G  A A   I + +S +P    RT VG    DS++H++ + R                  +P M++V D++D + P+ +D++V
Sbjct:  246 RCRRCRSYINPYVVFLEGGARWRCNMCNLTNDVPSGFDYDAVANKPRDRWSRA-ELNHSVVEFVAPAEYMVRPPQPLVYVFVLDVSVHSVKNGLLATAARTIKESLSRIPNVDNRTRVGFLAVDSSLHYFAIPRKEDVAEGEGEEGEENEWPEPRMMVVSDIDDPFLPMPTDLLV 419          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SEC24_MAGGR (Protein transport protein SEC24 OS=Magnaporthe grisea GN=SEC24 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.335e-23
Identity = 55/164 (33.54%), Postives = 93/164 (56.71%), Query Frame = 1
Query:   16 RCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLPEGP-RTMVGIATFDSTIHFYNLKR---ALQQPLMLIVPDVEDVYTPLQSDIIVP 495
            RC RC++YINP++ F+DQG R+ C++C  T++ P+ +  +              EL    VEFVA +EYMVR P P V+ FL DVS  A+ +G  A +   I   ++ +P    RT +G    DS++H++ + +      +  ML+V D+++ + P+  +++VP
Sbjct:  282 RCRRCRSYINPYVVFLDQGHRWRCNMCNLTNDVPQAFDWD-AAEQRAVDRWQRHELNHAVVEFVAPQEYMVRPPQPLVYLFLFDVSYAAVSSGLLATSARTILDSLNRIPNADRRTRLGFIAVDSSLHYFAVPKDGDENAETSMLVVSDLDEPFLPVPQELLVP 444          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SEC24_ASHGO (Protein transport protein SEC24 OS=Ashbya gossypii GN=SEC24 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.662e-23
Identity = 62/200 (31.00%), Postives = 106/200 (53.00%), Query Frame = 1
Query:   13 VRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLPE-GPRTMVGIATFDSTIHFYN--LKRALQQPLMLIVPDVEDVYTPLQSDIIVPGFRVPVNNLKIMLENISSTAQNHKLPRQPSGSLIQS 603
            VRC RC++YINPF+ F++ GRR+ C+ C   ++ P+ +  ++             E+ R  VE++A KEY VR P P+ + F+ DVS NA++ G  A A   + + +  LP    RT + I   D TIH+++  L        M+ V D+++ + P+   + V   +   NNL+ +L  I    Q++ LP+   G  +++
Sbjct:  205 VRCRRCRSYINPFVTFLEGGRRWRCNFCNLANDVPQAFDMDMQGVPINRYDRN--EIQRAVVEYLAPKEYAVRQPPPSCYAFVFDVSQNAIKNGLLATAARTLLESLDSLPNYDERTRITILAVDHTIHYFSVPLDEEGDHIRMMDVVDLDEPFLPMPDTMFV-SLKDCRNNLEKLLSQIPDIFQSNILPKFALGPALKA 401          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: YNB3_SCHPO (Uncharacterized protein C4.03c OS=Schizosaccharomyces pombe GN=SPBC4.03c PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.068e-21
Identity = 61/200 (30.50%), Postives = 102/200 (51.00%), Query Frame = 1
Query:   10 PVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRD--PMPAVFFFLIDVSMNALQTGATAAACSAISQVV-SDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPGFRVPVNNLKIMLENISSTAQNHKLPRQPSGSLIQ 600
            P RC +C+ YINPF++F     ++ C+LCG ++ +  D   N              EL  GT++F   K+Y +++  P PA F F+IDVS  A   G    A  AI  ++   +P  P   + I  FD +++F+NL   L+QP ML   D+E+ + P  S + V      V  ++ +L++  +  Q+ K+P    G+ ++
Sbjct:  213 PPRCKKCRGYINPFIQFTMASSKWTCNLCG-SENSFNDDGFNPLVGSQHDGVESRPELNVGTIDFKVGKDYWIKEDPPKPARFVFMIDVSYEASSKGLPKVAAEAIRNILYGPVPLDPNVKIAIVCFDRSVNFFNLSPNLEQPHMLAASDLENPFVPFSSGLFVDPIASKV-VIERLLDSFPAIFQDVKIPEPVVGNALE 410          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SEC24_PICST (Protein transport protein SEC24 OS=Pichia stipitis GN=SEC24 PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.068e-21
Identity = 53/160 (33.12%), Postives = 82/160 (51.25%), Query Frame = 1
Query:   16 RCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLPEGPRT-MVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIV 492
            RC RC+ YINPF+   + GRR+ C+ C   ++ P  +  +              EL    VEF+A KEYM R P P V+ F+IDVS+NA+Q+G T      I + +  +P   +T  V     DS +H++     L    +LIV D+++ + P    ++V
Sbjct:  206 RCRRCRGYINPFVTLAENGRRWRCNFCNLLNDIPSSFEYD-EISGTVKNKFDRVELNNAVVEFIAPKEYMARAPQPIVYTFIIDVSINAVQSGLTGTITRTILESLDRIPNKTKTARVAFIGVDSNLHYFRFNEGLDGTEVLIVSDIDEPFLPSPDGLLV 364          
The following BLAST results are available for this feature:
BLAST of DY260760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
SEC24_ASPFU2.299e-2431.72Protein transport protein sec24 OS=Aspergillus fum... [more]
SEC24_PICPA3.921e-2431.53Protein transport protein SEC24 OS=Pichia pastoris... [more]
SEC24_CHAGB3.921e-2432.28Protein transport protein SEC24 OS=Chaetomium glob... [more]
SEC24_PODAN1.490e-2333.54Protein transport protein SEC24 OS=Podospora anser... [more]
SEC24_SCHPO2.541e-2335.40Protein transport protein sec24 OS=Schizosaccharom... [more]
SEC24_YARLI4.335e-2332.00Protein transport protein SEC24 OS=Yarrowia lipoly... [more]
SEC24_MAGGR4.335e-2333.54Protein transport protein SEC24 OS=Magnaporthe gri... [more]
SEC24_ASHGO5.662e-2331.00Protein transport protein SEC24 OS=Ashbya gossypii... [more]
YNB3_SCHPO1.068e-2130.50Uncharacterized protein C4.03c OS=Schizosaccharomy... [more]
SEC24_PICST1.068e-2133.13Protein transport protein SEC24 OS=Pichia stipitis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP13YI04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260760 ID=DY260760; Name=DY260760; organism=Citrus clementina; type=EST; length=980bp
GACATGGGTCCTGTTCGATGTTCTCGCTGCAAAGCCTACATAAATCCTTT
CATGAAGTTCATTGATCAGGGAAGGAGGTTCATCTGCAGTTTATGTGGTT
TTACCGATGAGACTCCCCGTGATTATCACTGCAATCTAGGTCCAGATGGT
AGGCGTAGAGATGCTGATGACAGGCCCGAGCTATGTAGGGGGACGGTTGA
ATTTGTTGCCACAAAGGAATATATGGTTCGTGATCCCATGCCGGCTGTGT
TTTTCTTCCTTATTGATGTATCCATGAATGCCTTACAGACTGGTGCGACT
GCCGCAGCTTGCAGTGCAATCAGTCAAGTTGTTTCAGATCTGCCTGAAGG
TCCTCGAACAATGGTGGGAATTGCAACATTTGACTCCACAATCCATTTCT
ACAATTTGAAACGTGCGCTACAGCAGCCATTGATGCTCATTGTCCCTGAT
GTAGAAGATGTTTATACTCCTTTACAATCTGATATTATTGTTCCAGGTTT
CCGAGTGCCTGTCAACAATTTAAAGATAATGCTGGAAAACATTTCTAGCA
CGGCACAAAACCACAAATTGCCGAGACAACCTTCGGGGAGTCTAATCCAA
AGTAACTTATAGTGAGCTCTAAATAATGAATGTGGGCAACCATCAGAACT
TTTGATTATGCAGATCTGTATTCTAAAAGTCATTCACGATATTCCTAAAA
AGGTTAAAAAAAATAACATAATATTTTTCATGCAAAAAAAGCCAAACCCA
CAAATCACCACTAAACCACAAATAAACAAACAACAGAACACGTCATATAT
TATGCTCTAATTATAAACTCTCGTTTATGATTTCTTACTCACTATACATA
ACTTGCCACTATTATAATACAGAATTTTACACCATGCCACCCCACGTAAT
ATCAGTCAGGATCATTAGAAAATAAAAATAATCATTGACATATACATCTA
GCAAAACATCATAGCCATTATACTATTACG
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