DY260760

Overview
NameDY260760
Unique NameDY260760
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length980
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SEC24_PICGU (Protein transport protein SEC24 OS=Pichia guilliermondii GN=SEC24 PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 1.395e-21
Identity = 54/160 (33.75%), Postives = 84/160 (52.50%), Query Frame = 1
Query:   16 RCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLPEGPRT-MVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIV 492
            RC RC+ YINPF+   +QGRR+ C+LC   ++ P  +  +              EL    VEFVA KEYM R P P VF F+IDVS +A+ +G T+     I + +  +P   +T  V     DS +H++     L+   +LI  D+++ + P  S +++
Sbjct:  218 RCRRCRCYINPFVTLTEQGRRWRCNLCNLQNDIPAAFEYD-ETRGVPRNKFDRVELNHSVVEFVAPKEYMARAPQPIVFVFVIDVSADAVNSGLTSTVTRTILESLDRIPNQNKTARVAFLGVDSNLHYFRFDEGLEGSELLIASDLDEPFLPSPSGLLI 376          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SC241_CANGA (Protein transport protein SEC24-1 OS=Candida glabrata GN=SEC241 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.821e-21
Identity = 59/180 (32.78%), Postives = 94/180 (52.22%), Query Frame = 1
Query:   13 VRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLP-EGPRTMVGIATFDSTIHFYNLKR--ALQQPLMLIVPDVEDVYTPLQSDIIVPGFRVPVNNLKIMLENI 543
            VRC RC++YINPF KFI+QGRR+ C+ C   ++ P  +                 E+    +E+VA KEY VR P P+++ F+IDVS NA++ G   +    + Q +  LP    RT + I   D  +H  ++       +  +L V D+++ Y PL + ++V   R    N+++ LE I
Sbjct:  211 VRCRRCRSYINPFAKFIEQGRRWRCNFCRLANDLPMQFD-QSSIDTNIVNRLDRTEIKNAVMEYVAPKEYTVRPPPPSIYTFIIDVSQNAIKNGLFVSTIETLKQQLEYLPNRDNRTKISIILVDHALHILSIPADDVSNKFRILDVADIDEPYIPLPNSLVVSLSRCK-QNVQLALEKI 388          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SC242_CANGA (Protein transport protein SEC24-2 OS=Candida glabrata GN=SEC242 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 4.057e-21
Identity = 58/185 (31.35%), Postives = 96/185 (51.89%), Query Frame = 1
Query:   13 VRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLP-EGPRTMVGIATFDSTIHFYN--LKRALQQPLMLIVPDVEDVYTPLQSDIIVPGFRVPVNNLKIMLENISSTAQ 558
            VRC RC++Y+NPF+ FI+QGRR+ C+ C   ++ P     +              E+    +E++A KEY VR P P+ + F++DVS NA++ G  A    +I   +  LP    RT V I   D+++H+++  L     Q  M+ + D+++ + P    +IVP      NNL+ +L  +    Q
Sbjct:  220 VRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVP--MQLDQSFEGAPANRYERNEIKHSVMEYLAPKEYTVRQPPPSTYIFVLDVSQNAVKNGLLATTARSILDTLEFLPNHDNRTRVSILAVDNSLHYFSIPLDEESDQIRMMDISDIDEPFLPKPHSMIVP-LNECRNNLEKLLTQLPEIFQ 401          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SEC24_DEBHA (Protein transport protein SEC24 OS=Debaryomyces hansenii GN=SEC24 PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 5.299e-21
Identity = 52/160 (32.50%), Postives = 83/160 (51.88%), Query Frame = 1
Query:   16 RCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLPEGPRT-MVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIV 492
            RC RC+ YINPF+   +QGRR+ C+ C   ++ P  +  +              EL    VEFVA KEYM R P P V+ F+IDVS++A+ +G T+     I + +  +P   +T  V     DS +H++     L    +LIV D+++ + P    +++
Sbjct:  223 RCRRCRGYINPFVTLTEQGRRWRCNFCNLQNDIPSAFDYD-ELTGTAKNKFERVELNHSVVEFVAPKEYMARTPQPIVYTFIIDVSIDAVNSGLTSTITRTILESLDRIPNDNKTARVAFIGVDSNLHYFKFNEGLDGTDLLIVSDIDEPFLPSPDGLLI 381          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SEC24_SACKL (Protein transport protein SEC24 (Fragment) OS=Saccharomyces kluyveri GN=SEC24 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 9.039e-21
Identity = 52/167 (31.14%), Postives = 91/167 (54.49%), Query Frame = 1
Query:    1 DMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLP-EGPRTMVGIATFDSTIHFYNLKRALQ--QPLMLIVPDVEDVYTPLQSDIIV 492
            D   VRC RC++YINPF+ F++ GRR+ C+ C   ++ P  +  ++             E+    VE++A +EY VR P P+V+ F++DVS NA++ G  A A   + + +  LP    RT + I   D++IH++++    +     ML V D+++ + P+   + V
Sbjct:  214 DGXXVRCRRCRSYINPFVTFVEGGRRWRCNFCNLANDVPMAF--DMSTQGVPTNRYERNEVQHSVVEYLAPREYAVRAPPPSVYSFILDVSQNAIKNGLLATAARTLLETLDTLPNHDDRTRISILAVDNSIHYFSIPTDEEGDHIKMLDVVDLDEPFLPMPDSLFV 378          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SEC24_CANAL (Protein transport protein SEC24 OS=Candida albicans GN=SEC24 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.014e-20
Identity = 51/160 (31.87%), Postives = 81/160 (50.62%), Query Frame = 1
Query:   16 RCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLP-EGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIV 492
            RC RC+ YINPF+   + GRR+ C+ C   ++ P  +  +              EL    VEF+A KEYM R P P V+ F+IDVS++A+Q+G T      I + +  +P E     V     DS +H+      L+   +L+V D+++ + P    ++V
Sbjct:  230 RCRRCRGYINPFVTLAENGRRWRCNFCNLLNDIPSAFDYD-EISGQVKNKFDRVELNHSVVEFIAPKEYMARAPQPIVYTFIIDVSVHAIQSGLTGTITRTILESLDRIPNENKTARVSFIGVDSNLHYIRFNEGLEGTEILVVADIDEPFLPSPGGLLV 388          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SEC24_YEAST (Protein transport protein SEC24 OS=Saccharomyces cerevisiae GN=SEC24 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.630e-20
Identity = 57/205 (27.80%), Postives = 105/205 (51.22%), Query Frame = 1
Query:   13 VRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLP-EGPRTMVGIATFDSTIHFY-------NLKRALQQPLMLIVPDVEDVYTPLQSDIIVPGFRVPVNNLKIMLENISSTAQNHKLPRQPSGSLIQS 603
            VRC RC++Y+NPF+ FI+QGRR+ C+ C   ++ P     +              E+    +E++A KEY +R P PA + FLIDVS +++++G  A   + + Q +  +P    RT + I   D+ IH++       N + +  Q  M+ + D+E+ + P  + ++V   +    N++ +L  I    Q++ +     G  ++S
Sbjct:  229 VRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVP--MQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEEPFLPRPNSMVV-SLKACRQNIETLLTKIPQIFQSNLITNFALGPALKS 430          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SC241_SACCA (Protein transport protein SEC24-1 OS=Saccharomyces castellii GN=SEC241 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.435e-20
Identity = 65/241 (26.97%), Postives = 119/241 (49.38%), Query Frame = 1
Query:   13 VRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLP-EGPRTMVGIATFDSTIHFYNL---KRALQQPLMLIVPDVEDVYTPLQSDIIVPGFRVPVNNLKIMLENISSTAQNHKLPRQPSGSLIQSNL**ALNNECGQPSELLIMQICILKV-IHDIPKKVKKNNI 720
            VRC RC++Y+NPF+ F   GRR+ C++C   +E P     +              EL    VE++A KEY +R P P+ + F+IDVS NA++ G        +   +  LP    RT + I   D+ +H++ +    +  QQ  M+ V D++D + P + D +V       NN++ +L  I    QN+ + +   G  +Q+    A N    +  +++++   +  + +  + K+V++ N+
Sbjct:  224 VRCRRCRSYMNPFVHFNQDGRRWKCNICNLFNEVPS--FLDRMPNDTMSNRYMRNELRYSVVEYLAPKEYSLRQPPPSTYTFIIDVSQNAMKNGLLGTTTRTLLDNLDSLPNHDGRTRISILCVDNGLHYFAIPSDDQEGQQVEMMDVCDLDDAFIP-RPDSMVVNLVQCRNNIETLLTKIPQIFQNNIINKFALGPALQA----AYNLTRNEGGKIIVVSATLPNIGVGQLKKRVEEANV 457          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SFB2_YEAST (SED5-binding protein 2 OS=Saccharomyces cerevisiae GN=SFB2 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.305e-19
Identity = 60/216 (27.78%), Postives = 104/216 (48.15%), Query Frame = 1
Query:   13 VRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLP-EGPRTMVGIATFDSTIHFYNL--------------------------------KRALQQPLMLIVPDVEDVYTPLQSDIIVPGFRVPVNNLKIMLENISSTAQN 561
            VRC RC++Y+NPF+ FI+QGR++ C++C F ++ P  +  NL             E+    V+++A  EY VR+P P+V+ FL+DVS NA++ G  A +   I + +  LP    RT + I   D ++H++ +                                   +Q   M  + D+++ + P+ SD +V   +   NNL+ +L+ I    Q+
Sbjct:  162 VRCRRCRSYMNPFVVFINQGRKWQCNICRFKNDVPFGFDQNL--QGAPINRYERNEIKNSVVDYLAPVEYSVREPPPSVYVFLLDVSQNAVKNGLLATSARTILENIEFLPNHDGRTRIAIICVDHSLHYFYVPLDDDYEVSDEDDEESDGEEEDEDEEEEDVDNSETIQ---MFDIGDLDEPFLPMPSDELVVPLKYCKNNLETLLKKIPEIFQD 372          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SEC24_LODEL (Protein transport protein SEC24 OS=Lodderomyces elongisporus GN=SEC24 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.305e-19
Identity = 48/160 (30.00%), Postives = 80/160 (50.00%), Query Frame = 1
Query:   16 RCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLP-EGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIV 492
            RC RC+ YINPF+   + GRR+ C+ C   ++ P  +  +              EL    VEF+A KEYM R P P V+ F+IDVS++A+ +G T      I + +  +P E     V     D+ +H++     L    +++V D+++ + P    ++V
Sbjct:  261 RCRRCRGYINPFITLAENGRRWRCNFCNLLNDIPSAFEYD-EISGQVKNKFDRVELNHSVVEFIAPKEYMARAPQPIVYVFIIDVSVHAVSSGLTGTITRTILESLDRIPNENKTARVAFIGVDTNLHYFRFNEGLDGTEIMVVADIDEPFLPSPGGLLV 419          
The following BLAST results are available for this feature:
BLAST of DY260760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
SEC24_PICGU1.395e-2133.75Protein transport protein SEC24 OS=Pichia guillier... [more]
SC241_CANGA1.821e-2132.78Protein transport protein SEC24-1 OS=Candida glabr... [more]
SC242_CANGA4.057e-2131.35Protein transport protein SEC24-2 OS=Candida glabr... [more]
SEC24_DEBHA5.299e-2132.50Protein transport protein SEC24 OS=Debaryomyces ha... [more]
SEC24_SACKL9.039e-2131.14Protein transport protein SEC24 (Fragment) OS=Sacc... [more]
SEC24_CANAL2.014e-2031.88Protein transport protein SEC24 OS=Candida albican... [more]
SEC24_YEAST2.630e-2027.80Protein transport protein SEC24 OS=Saccharomyces c... [more]
SC241_SACCA3.435e-2026.97Protein transport protein SEC24-1 OS=Saccharomyces... [more]
SFB2_YEAST1.305e-1927.78SED5-binding protein 2 OS=Saccharomyces cerevisiae... [more]
SEC24_LODEL1.305e-1930.00Protein transport protein SEC24 OS=Lodderomyces el... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP13YI04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260760 ID=DY260760; Name=DY260760; organism=Citrus clementina; type=EST; length=980bp
GACATGGGTCCTGTTCGATGTTCTCGCTGCAAAGCCTACATAAATCCTTT
CATGAAGTTCATTGATCAGGGAAGGAGGTTCATCTGCAGTTTATGTGGTT
TTACCGATGAGACTCCCCGTGATTATCACTGCAATCTAGGTCCAGATGGT
AGGCGTAGAGATGCTGATGACAGGCCCGAGCTATGTAGGGGGACGGTTGA
ATTTGTTGCCACAAAGGAATATATGGTTCGTGATCCCATGCCGGCTGTGT
TTTTCTTCCTTATTGATGTATCCATGAATGCCTTACAGACTGGTGCGACT
GCCGCAGCTTGCAGTGCAATCAGTCAAGTTGTTTCAGATCTGCCTGAAGG
TCCTCGAACAATGGTGGGAATTGCAACATTTGACTCCACAATCCATTTCT
ACAATTTGAAACGTGCGCTACAGCAGCCATTGATGCTCATTGTCCCTGAT
GTAGAAGATGTTTATACTCCTTTACAATCTGATATTATTGTTCCAGGTTT
CCGAGTGCCTGTCAACAATTTAAAGATAATGCTGGAAAACATTTCTAGCA
CGGCACAAAACCACAAATTGCCGAGACAACCTTCGGGGAGTCTAATCCAA
AGTAACTTATAGTGAGCTCTAAATAATGAATGTGGGCAACCATCAGAACT
TTTGATTATGCAGATCTGTATTCTAAAAGTCATTCACGATATTCCTAAAA
AGGTTAAAAAAAATAACATAATATTTTTCATGCAAAAAAAGCCAAACCCA
CAAATCACCACTAAACCACAAATAAACAAACAACAGAACACGTCATATAT
TATGCTCTAATTATAAACTCTCGTTTATGATTTCTTACTCACTATACATA
ACTTGCCACTATTATAATACAGAATTTTACACCATGCCACCCCACGTAAT
ATCAGTCAGGATCATTAGAAAATAAAAATAATCATTGACATATACATCTA
GCAAAACATCATAGCCATTATACTATTACG
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