DY260760

Overview
NameDY260760
Unique NameDY260760
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length980
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SC242_SACBA (Protein transport protein SEC24-2 OS=Saccharomyces bayanus GN=SEC242 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.705e-19
Identity = 60/205 (29.27%), Postives = 104/205 (50.73%), Query Frame = 1
Query:   13 VRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLP-EGPRTMVGIATFDSTIHFY-------NLKRALQQPLMLIVPDVEDVYTPLQSDIIVPGFRVPVNNLKIMLENISSTAQNHKLPRQPSGSLIQS 603
            VRC RC++Y+NPF+ FI+QGRR+ C+ C   ++ P     +              E+    +E++A KEY +R P PA + FL+DVS  ++++G  A   + + Q +  +P    RT + I   D+ IH++       N + +  Q  M+ + D+E+ + P  + ++V        +LK   +NI S     K+P+    +LI S
Sbjct:  229 VRCRRCRSYMNPFITFIEQGRRWRCNFCRLANDVP--MQMDQTDPNDPKSRYDRNEIKCAVMEYMAPKEYTLRQPPPATYCFLVDVSQASIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSDNNEGSTDQINMMDIADLEEPFLPRPNSMVV--------SLKACRQNIESLLT--KIPQIFQSNLITS 421          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SC241_SACBA (Protein transport protein SEC24-1 OS=Saccharomyces bayanus GN=SEC241 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.960e-19
Identity = 47/131 (35.88%), Postives = 75/131 (57.25%), Query Frame = 1
Query:   13 VRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLP-EGPRTMVGIATFDSTIHFY 402
            VRC RC++Y+NPF+ FI+QGRR+ C++C F ++ P  +  NL             E+    +E++A  EY VR+P P+ + F++DVS NA++ G  A +   I + +  LP    RT V I   D  +H++
Sbjct:  162 VRCRRCRSYLNPFVAFIEQGRRWQCNICRFKNDVPFGFDQNL--QGAPINRYERNEIKHSVMEYLAPIEYSVREPPPSTYVFILDVSQNAVRNGLLATSARTILENLESLPNHDGRTSVSIICVDHALHYF 290          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SEC24_KLULA (Protein transport protein SEC24 OS=Kluyveromyces lactis GN=SEC24 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 6.478e-19
Identity = 61/226 (26.99%), Postives = 109/226 (48.23%), Query Frame = 1
Query:   13 VRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLP-EGPRTMVGIATFDSTIHFYN--LKRALQQPLMLIVPDVEDVYTPLQSDIIVPGFRVPVNNLKIMLENISSTAQNHKLPRQPSGSLIQSNL**ALNNECGQPSELLIMQICILKV 681
            VRC RC+AY+NPF++ I+ G R+ C+ C   +  P+    N              E     V+FVA KEY VR P P+ + F++DVS  +++ G  A A   + + +  +P    RT + I   D ++H++   L        M  V D+++ + P  + ++VP      +N++ +L ++    Q +  PR    S ++S    ALN    Q  +++++   +  V
Sbjct:  242 VRCRRCRAYLNPFVQVIENGLRWRCNFCNLANNFPQAIDMN-------GNRYERPEFNHSVVDFVAPKEYAVRPPPPSTYAFILDVSQASIKNGLLATAARTLLESLDTIPNHDERTRISIICVDQSLHYFRIPLDEEGDNIKMYDVADLDEPFLPSPTGLLVPLIEAR-SNIEKLLTSLPEIFQQNIQPRFALASALKS----ALNLIRAQGGKIIVVGATLANV 455          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SFB3_YEAST (SED5-binding protein 3 OS=Saccharomyces cerevisiae GN=SFB3 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.755e-16
Identity = 56/207 (27.05%), Postives = 99/207 (47.83%), Query Frame = 1
Query:    1 DMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMV---RDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLPE-GPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIV-PGFRVP-VNNLKIMLENISSTAQNHKLPRQPSGSLIQS 603
            D  P+RC RC+AY NP  +F       IC++C    + P ++   +             EL  GTV+F+    Y     ++ +P  + FLIDVS+ A + G++ A    +   +  + +  P   V I  +D+ + F+NL+  L      IV +++DV+ P  + + V PG  +  +N+  I +    ST +   +P+   GS +Q+
Sbjct:  214 DGTPLRCRRCRAYANPKFQFTYDSS-VICNICRVKMQVPGEHFAPMGPNGQRSDLNEKSELLHGTVDFLVPSIYNAIQEKELLPLHYVFLIDVSLLANENGSSLAMVEGVRSCIEYISDFQPNCEVAIIVYDNKLRFFNLRPDLDNAQEYIVSELDDVFLPFYNGLFVKPGNSMKIINDTLIKISGYISTDKYSHVPQVCYGSALQA 419          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SC242_SACCA (Protein transport protein SEC24-2 OS=Saccharomyces castellii GN=SEC242 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.002e-11
Identity = 49/199 (24.62%), Postives = 100/199 (50.25%), Query Frame = 1
Query:   13 VRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETP-RDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEY--MVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLP-EGPRTMVGIATFDSTIHFYNL----KRALQQPLMLIVPDVEDVYTPLQSDIIVPGFRVPVNNLKIMLENI-----SSTAQNHKL 570
            +RC RC+ Y+NPF+K +    ++ C+ CG  +  P    H  L             EL   +++F+ +  Y   V++  PAV+ F+IDVS+N ++ G   +  +A+   +  +P    +T++ +   DS++H++++    +   ++  M  + D+++ + P  + ++V       NNL+ +L  I     S+T Q+  L
Sbjct:  224 IRCRRCRGYLNPFVKILQVESKWRCNFCGCINGFPDGSEHFQL------PNLYNRNELTYSSMDFLPSSSYSQQVKEEPPAVYTFVIDVSINTIKNGYLFSVANALVNSLDLIPNHDNKTLISLICADSSLHYFSVPLDTEDGPKESSMFDISDLDEPFLPTSNSLLV-SLSQCRNNLEHLLLKIPEIFKSTTIQSFAL 415          
The following BLAST results are available for this feature:
BLAST of DY260760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
SC242_SACBA1.705e-1929.27Protein transport protein SEC24-2 OS=Saccharomyces... [more]
SC241_SACBA4.960e-1935.88Protein transport protein SEC24-1 OS=Saccharomyces... [more]
SEC24_KLULA6.478e-1926.99Protein transport protein SEC24 OS=Kluyveromyces l... [more]
SFB3_YEAST8.755e-1627.05SED5-binding protein 3 OS=Saccharomyces cerevisiae... [more]
SC242_SACCA1.002e-1124.62Protein transport protein SEC24-2 OS=Saccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP13YI04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260760 ID=DY260760; Name=DY260760; organism=Citrus clementina; type=EST; length=980bp
GACATGGGTCCTGTTCGATGTTCTCGCTGCAAAGCCTACATAAATCCTTT
CATGAAGTTCATTGATCAGGGAAGGAGGTTCATCTGCAGTTTATGTGGTT
TTACCGATGAGACTCCCCGTGATTATCACTGCAATCTAGGTCCAGATGGT
AGGCGTAGAGATGCTGATGACAGGCCCGAGCTATGTAGGGGGACGGTTGA
ATTTGTTGCCACAAAGGAATATATGGTTCGTGATCCCATGCCGGCTGTGT
TTTTCTTCCTTATTGATGTATCCATGAATGCCTTACAGACTGGTGCGACT
GCCGCAGCTTGCAGTGCAATCAGTCAAGTTGTTTCAGATCTGCCTGAAGG
TCCTCGAACAATGGTGGGAATTGCAACATTTGACTCCACAATCCATTTCT
ACAATTTGAAACGTGCGCTACAGCAGCCATTGATGCTCATTGTCCCTGAT
GTAGAAGATGTTTATACTCCTTTACAATCTGATATTATTGTTCCAGGTTT
CCGAGTGCCTGTCAACAATTTAAAGATAATGCTGGAAAACATTTCTAGCA
CGGCACAAAACCACAAATTGCCGAGACAACCTTCGGGGAGTCTAATCCAA
AGTAACTTATAGTGAGCTCTAAATAATGAATGTGGGCAACCATCAGAACT
TTTGATTATGCAGATCTGTATTCTAAAAGTCATTCACGATATTCCTAAAA
AGGTTAAAAAAAATAACATAATATTTTTCATGCAAAAAAAGCCAAACCCA
CAAATCACCACTAAACCACAAATAAACAAACAACAGAACACGTCATATAT
TATGCTCTAATTATAAACTCTCGTTTATGATTTCTTACTCACTATACATA
ACTTGCCACTATTATAATACAGAATTTTACACCATGCCACCCCACGTAAT
ATCAGTCAGGATCATTAGAAAATAAAAATAATCATTGACATATACATCTA
GCAAAACATCATAGCCATTATACTATTACG
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