DY262447

Overview
NameDY262447
Unique NameDY262447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1303
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262447_ssr15 microsatellite DY262447_ssr15:15..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY262447 vs. ExPASy Swiss-Prot
Match: Y3209_ORYSJ (B3 domain-containing protein Os03g0120900 OS=Oryza sativa subsp. japonica GN=Os03g0120900 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.022e-36
Identity = 76/123 (61.79%), Postives = 89/123 (72.36%), Query Frame = 1
Query:  619 GDGVATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFGQEKNWKAGDICSFHRSTG--GE*QLYIDWK 981
            G  V  + G       ++ +F+K VTPSDVGKLNRLVIPKQHAEK+FPL + S  KGLLL+FED TGK WRFRYSYWNSSQSYV+TKGWSRF +EK   AGD  SF R  G     +L+IDW+
Sbjct:   17 GGEVQESGGRSLAAVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDAASNEKGLLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGVGEAARGRLFIDWR 139          
BLAST of DY262447 vs. ExPASy Swiss-Prot
Match: Y4814_ORYSJ (B3 domain-containing protein Os04g0581400 OS=Oryza sativa subsp. japonica GN=Os04g0581400 PE=2 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 1.334e-36
Identity = 75/115 (65.22%), Postives = 89/115 (77.39%), Query Frame = 1
Query:  643 GSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFGQEKNWKAGDICSFHR--STGGE*QLYIDWK 981
            G D  +  ++ +F+K VTPSDVGKLNRLVIPKQHAEK+FPL S +  KGLLL+FED TGK+WRFRYSYWNSSQSYV+TKGWSRF +EK   AGD  SF R  +     +L+IDWK
Sbjct:   98 GEDVEVIEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSAANEKGLLLSFEDRTGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFCRGAAEATRDRLFIDWK 212          
BLAST of DY262447 vs. ExPASy Swiss-Prot
Match: NGA3_ARATH (B3 domain-containing transcription factor NGA3 OS=Arabidopsis thaliana GN=NGA3 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.334e-36
Identity = 72/108 (66.67%), Postives = 85/108 (78.70%), Query Frame = 1
Query:  667 RDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFGQEKNWKAGDICSFHRSTGGE*Q---LYIDWK 981
            ++ +F+K VTPSDVGKLNRLVIPKQHAE++FPL S +   G LLNF+D  GK+WRFRYSYWNSSQSYV+TKGWSRF +EK   AGDI SF R  G E +   LYIDW+
Sbjct:   52 KEHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDSSNNQNGTLLNFQDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGIGDESERSKLYIDWR 159          
BLAST of DY262447 vs. ExPASy Swiss-Prot
Match: RAVL3_ARATH (AP2/ERF and B3 domain-containing transcription factor At1g51120 OS=Arabidopsis thaliana GN=At1g51120 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.743e-36
Identity = 96/237 (40.51%), Postives = 132/237 (55.70%), Query Frame = 1
Query:  262 SSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAAKAYDIAAQRFRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDEL---EQSKRNYGLDANGKRVIKHGEGDGVATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSG-----STSKG---LLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFGQEKNWKAGDICSFH 939
            ++K+KGVV Q NG WGAQIY  H+R+WLGTF    EAA AYD A+ + R  DA  + +    +  +  E D +  + +    + I D   +H + D L    Q   N  +    K+V+  GEG   +    S        QLF+K +TPSDVGKLNRLVIPK++A K+ P  S       TS+G   + + F D   + W+FRY YW SSQS+V T+GW+ F +EKN K  DI  F+
Sbjct:   44 TTKFKGVVQQQNGHWGAQIYADHRRIWLGTFKSAHEAAAAYDSASIKLRSFDA-NSHRNFPWSDFTLHEPDFQECYTTEAVLNMIRDGSYQHKFRDFLRIRSQIVANINI-VGSKQVLGGGEGGQESNKCFS------CTQLFQKELTPSDVGKLNRLVIPKKYAVKYMPFISDDQSEKETSEGVEDVEVVFYDRAMRQWKFRYCYWRSSQSFVFTRGWNGFVKEKNLKEKDIIVFY 272          
BLAST of DY262447 vs. ExPASy Swiss-Prot
Match: NGA2_ARATH (B3 domain-containing transcription factor NGA2 OS=Arabidopsis thaliana GN=NGA2 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.276e-36
Identity = 72/108 (66.67%), Postives = 88/108 (81.48%), Query Frame = 1
Query:  667 RDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTS---KGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFGQEKNWKAGDICSFHRSTGGE*QLYIDWK 981
            R+ +F+K VTPSDVGKLNRLVIPKQHAE++FPL + +T+   KGLLLNFED +G  WRFRYSYWNSSQSYV+TKGWSRF ++K   AGDI SF R +  + +LYIDW+
Sbjct:   19 REHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDNSTTNDSNKGLLLNFEDRSGNSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRDSCNKDKLYIDWR 126          
BLAST of DY262447 vs. ExPASy Swiss-Prot
Match: RAVL2_ARATH (AP2/ERF and B3 domain-containing transcription factor At1g50680 OS=Arabidopsis thaliana GN=At1g50680 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 6.623e-36
Identity = 92/236 (38.98%), Postives = 131/236 (55.51%), Query Frame = 1
Query:  268 KYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAAKAYDIAAQRFRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDELE-QSKRNYGLDANGKRVIKHGEGDGVATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTS-----------KGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFGQEKNWKAGDICSFH 939
            KYKGVV Q NG WGAQIY  H+R+WLGTF   +EAA AYD A+ + R  DA  + +    +  + +E D +  + +    + I D   +H + D L  +S+    ++  G    K   G+       SD+      QLF+K +TPSDVGKLNRLVIPK++A K+ P  S   S           + + + F D   + W+FRY YW SSQS+V T+GW+ F +EKN K  D+ +F+
Sbjct:   27 KYKGVVQQQNGHWGAQIYADHKRIWLGTFKSADEAATAYDSASIKLRSFDA-NSHRNFPWSTITLNEPDFQNCYTTETVLNMIRDGSYQHKFRDFLRIRSQIVASINIGGP---KQARGE---VNQESDKCFSC-TQLFQKELTPSDVGKLNRLVIPKKYAVKYMPFISADQSEKEEGEIVGSVEDVEVVFYDRAMRQWKFRYCYWKSSQSFVFTRGWNSFVKEKNLKEKDVIAFY 254          
BLAST of DY262447 vs. ExPASy Swiss-Prot
Match: Y2641_ORYSJ (B3 domain-containing protein Os02g0764100 OS=Oryza sativa subsp. japonica GN=Os02g0764100 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 4.746e-34
Identity = 75/108 (69.44%), Postives = 86/108 (79.63%), Query Frame = 1
Query:  664 ARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQ-SGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFGQEKNWKAGDICSFHRST-GGE*QLYIDWK 981
            AR+ LFEKAVTPSDVGKLNRL++PKQHAEKHFPL+ + S + G+LLNFED  GKVWRFRYS WNSSQSYVLTKGWSRF +EK  +AGD   F  S  G +  L+ID K
Sbjct:   12 AREPLFEKAVTPSDVGKLNRLLVPKQHAEKHFPLRRTSSDASGVLLNFEDGEGKVWRFRYSCWNSSQSYVLTKGWSRFVREKGLRAGDTIVFSGSAYGPDKLLFIDCK 119          
BLAST of DY262447 vs. ExPASy Swiss-Prot
Match: Y2608_ARATH (B3 domain-containing protein At2g36080 OS=Arabidopsis thaliana GN=ARF31 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.804e-33
Identity = 69/112 (61.61%), Postives = 85/112 (75.89%), Query Frame = 1
Query:  655 VLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTS---KGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFGQEKNWKAGDICSFHRSTGGE*QLYIDWK 981
            V++ ++ LFEK +TPSDVGKLNRLVIPKQHAE++FPL + +     KGLLL FED  GK WRFRYSYWNSSQSYVLTKGWSR+ +EK+  AGD+  FHR      + +I W+
Sbjct:   30 VVEEKEALFEKPLTPSDVGKLNRLVIPKQHAERYFPLAAAAADAVEKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKHLDAGDVVLFHRHRSDGGRFFIGWR 141          
BLAST of DY262447 vs. ExPASy Swiss-Prot
Match: Y3158_ARATH (B3 domain-containing protein At3g11580 OS=Arabidopsis thaliana GN=ARF32 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.018e-33
Identity = 69/123 (56.10%), Postives = 89/123 (72.36%), Query Frame = 1
Query:  646 SDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGS-----------TSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFGQEKNWKAGDICSFHRSTGGE*QLYIDWK 981
            +D  +  R+ LFEK++TPSDVGKLNRLVIPKQHAEK+FPL + +           T KG+LL+FED +GK W+FRYSYWNSSQSYVLTKGWSR+ ++K+  AGD+  F R      +L+I W+
Sbjct:   18 NDVAIAQRESLFEKSLTPSDVGKLNRLVIPKQHAEKYFPLNNNNNNGGSGDDVATTEKGMLLSFEDESGKCWKFRYSYWNSSQSYVLTKGWSRYVKDKHLDAGDVVFFQRHRFDLHRLFIGWR 140          
BLAST of DY262447 vs. ExPASy Swiss-Prot
Match: Y5625_ARATH (B3 domain-containing protein At5g06250 OS=Arabidopsis thaliana GN=At5g06250 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 6.854e-33
Identity = 68/115 (59.13%), Postives = 84/115 (73.04%), Query Frame = 1
Query:  667 RDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQS----------GSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFGQEKNWKAGDICSFHRSTGGE*QLYIDWK 981
            ++ LFEK++TPSDVGKLNRLVIPKQHAEK+FPL +           S+ KG+LL+FED +GK WRFRYSYWNSSQSYVLTKGWSRF ++K    GD+  F R      +L+I W+
Sbjct:   42 KESLFEKSLTPSDVGKLNRLVIPKQHAEKYFPLNAVLVSSAAADTSSSEKGMLLSFEDESGKSWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVVFFQRHRSDSRRLFIGWR 156          
The following BLAST results are available for this feature:
BLAST of DY262447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
Y3209_ORYSJ1.022e-3661.79B3 domain-containing protein Os03g0120900 OS=Oryza... [more]
Y4814_ORYSJ1.334e-3665.22B3 domain-containing protein Os04g0581400 OS=Oryza... [more]
NGA3_ARATH1.334e-3666.67B3 domain-containing transcription factor NGA3 OS=... [more]
RAVL3_ARATH1.743e-3640.51AP2/ERF and B3 domain-containing transcription fac... [more]
NGA2_ARATH2.276e-3666.67B3 domain-containing transcription factor NGA2 OS=... [more]
RAVL2_ARATH6.623e-3638.98AP2/ERF and B3 domain-containing transcription fac... [more]
Y2641_ORYSJ4.746e-3469.44B3 domain-containing protein Os02g0764100 OS=Oryza... [more]
Y2608_ARATH1.804e-3361.61B3 domain-containing protein At2g36080 OS=Arabidop... [more]
Y3158_ARATH4.018e-3356.10B3 domain-containing protein At3g11580 OS=Arabidop... [more]
Y5625_ARATH6.854e-3359.13B3 domain-containing protein At5g06250 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AA06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262447 ID=DY262447; Name=DY262447; organism=Citrus clementina; type=EST; length=1303bp
ATTCAGCATCCCTCTCTTTCTTTCTTGTACCAGAACCTCTTGTAGACACA
CATAACACACATGAAAAGAGAAGAAATGGACGGAAGTTGCATGGACGAAA
GCACGACAACTGATTCAGCATCAACATCCCCGCCAATAACTTTCCCTCCG
AGCATCCCGCCGACCAAGTCGCCGGAGAGTCTTTGCCGAGTCGGCAGCGG
AGCCTCCAGCGTGATTCTCGACTCGGAAGCCGGCGTGGAGGCTGAGTCGA
GGAAGCTCCCGTCTTCCAAATACAAAGGGGTGGTCCCACAGCCGAATGGG
AGGTGGGGCGCCCAGATATACGAGAAGCACCAAAGGGTCTGGCTCGGCAC
CTTCAACGAGGAAGAGGAAGCTGCCAAGGCCTACGATATCGCTGCGCAGC
GTTTCCGCGGACGCGATGCCGTCACAAACTTCAAGCAAATGTCTTGTGCT
GGAACGTCCTCCGACGAGGGTGATATCGAAATGGCGTTCTTGAGCTCCCA
CTCCAAGTCCGAGATCGTCGATATGCTGAGGAAGCACACTTACAACGACG
AGCTCGAGCAGAGCAAAAGAAACTACGGCCTCGATGCCAACGGCAAGCGT
GTAATCAAACACGGGGAAGGTGATGGTGTTGCCACTGCCTTCGGTTCAGA
CCGGGTCCTTAAAGCGCGTGACCAGCTTTTTGAAAAGGCCGTTACCCCAA
GTGACGTGGGGAAGCTGAACCGGCTCGTGATACCCAAGCAGCACGCGGAG
AAGCACTTCCCTTTACAGAGCGGAAGCACTTCCAAGGGACTGCTCTTGAA
CTTTGAGGATGTCACCGGCAAAGTTTGGAGGTTTAGGTACTCCTACTGGA
ACAGCAGTCAAAGCTACGTTTTGACCAAAGGGTGGAGCCGGTTCGGTCAG
GAGAAGAATTGGAAAGCCGGTGACATTTGTAGCTTTCACAGATCGACCGG
TGGGGAATAGCAGCTTTACATTGATTGGAAAGCCAGAACAGGACGGTCGA
GAACCCGGTCGAGCCCGTCAAAAGAAGAGGCTATTTGGGGTCAACATTTC
AAATTCCGGGGAAGGGTCTTGTTGGTGTCCAAAAAAATGGGGGCAAAATA
AAAAAAAAAACGAACGGCAAAAGGCTTAAAAAAAGGAACCTTTTGGCCTT
TTAAAGGGAACAAAAAAAAAAAAAAAAGAATTGGAAACCTTTCAAAAACT
CTTTTTTTTTTTTTTTTTTTCCTTTTTTTGAAAAAATTATATATTTCTTT
GTTTGGAAAAAATTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTCTTTTTT
TTT
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