DY262454

Overview
NameDY262454
Unique NameDY262454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length772
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15105 contig Ccv1_Contig15105:13..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_GEOKA (S-adenosylmethionine synthetase OS=Geobacillus kaustophilus GN=metK PE=3 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 3.721e-66
Identity = 133/232 (57.33%), Postives = 161/232 (69.40%), Query Frame = 3
Query:   90 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRP--------EEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKT 761
            LFTSESV EGHPDK+CDQISDAILDA LE+DP+++VACET   T LV+V GEITT   V+  +IVRDT R IG+     G DAD C VL  I++QSPDIA GV   L  R         E IGAGDQG MFG+A +ET E MP+   LA +L  +L EVRK    P+LRPDGKTQVT+E Y+ENG   PVRV T+++S QH   +T ++I  D+KE VIKPV+P + LDE T
Sbjct:    7 LFTSESVTEGHPDKICDQISDAILDAILEKDPNARVACETSVTTGLVLVSGEITTSTYVDIPRIVRDTVREIGYTRAKYGFDADTCAVLTSIDEQSPDIAMGVDRALEAREGQMTDEEIEAIGAGDQGLMFGFACNETEELMPMPISLAHRLARRLAEVRKTDVLPYLRPDGKTQVTIE-YDENGK--PVRVDTIVVSAQHHPEITQEQIQRDIKEQVIKPVVPAELLDENT 235          
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_LACSS (S-adenosylmethionine synthetase OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=metK PE=3 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.860e-66
Identity = 134/233 (57.51%), Postives = 166/233 (71.24%), Query Frame = 3
Query:   81 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRP------EEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKT 761
            E  LFTSESV+EGHPDK+ DQISDAILDA LEQDP ++VACET   T LV+V GEI+T A V+ +K+VR+T + IG+     G D DNC V+V +++QSPDIAQGV   L  R       ++IGAGDQG MFG+A D+TPE MPL   L+ +L  K+ E+RK+G   +LRPD K QVTVE Y+EN    P RV TV+ISTQHDE VT + I  D+ E VIK VIP +YLD+KT
Sbjct:    3 ERHLFTSESVSEGHPDKIADQISDAILDAMLEQDPQARVACETTVTTGLVLVVGEISTTAYVDIQKVVRETIKKIGYRDGQYGFDGDNCAVIVALDEQSPDIAQGVDDSLESREKDEDPLDKIGAGDQGLMFGFAVDQTPELMPLPIALSHRLMRKVAELRKSGQLAYLRPDAKAQVTVE-YDENEQ--PKRVDTVVISTQHDEDVTLETIQKDMLEQVIKTVIPAEYLDDKT 232          
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_CARHZ (S-adenosylmethionine synthetase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=metK PE=3 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.860e-66
Identity = 131/232 (56.47%), Postives = 159/232 (68.53%), Query Frame = 3
Query:   90 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRP--------EEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKT 761
            LFTSESV EGHPDK+ DQISDA+LDA L QDP ++VACET   T LV+V GEITT   V+  K+VR+T R IG+     G D D C V+  I++QSPDIA GV+  L  +         E IGAGDQG MFGYAT+ETPE MP+   LA +L  +L EVRK+   P+LRPDGKTQVTVEY  +     PVRV T+++STQH   V+ +EI  D+ EHV+KPVIPE  LDE T
Sbjct:    5 LFTSESVTEGHPDKIADQISDAVLDAILAQDPQARVACETAVTTGLVLVIGEITTSCYVDIPKVVRETIREIGYTRAKYGFDGDTCAVITSIDEQSPDIALGVNRALEAKTGEMTDDEIEAIGAGDQGMMFGYATNETPELMPMPISLAHRLARRLAEVRKSRLLPYLRPDGKTQVTVEYDGDK----PVRVDTIVVSTQHHPDVSQEEIRKDIIEHVVKPVIPEHLLDENT 232          
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_CALS8 (S-adenosylmethionine synthetase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=metK PE=3 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 6.347e-66
Identity = 131/232 (56.47%), Postives = 159/232 (68.53%), Query Frame = 3
Query:   90 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKR--------PEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKT 761
            LFTSESV EGHPDK+CDQISDA+LDA LE+DP ++VACE    T LV+V GEITTK  V+  KI RDT R IG+     G DAD C V+  I++QSPDIA GV   L  +         E IGAGDQG MFG+A DETP  MP+   LA +L  +L  VRK G  P+LRPDGKTQVTVEY ++     P+RV T+++STQH   VT+ +I AD+ EHVIKP+IPE  LD+ T
Sbjct:    4 LFTSESVTEGHPDKICDQISDAVLDAILEKDPYARVACEVAVTTGLVLVMGEITTKCYVDIPKIARDTIREIGYTRAKYGFDADTCAVITSIDEQSPDIAMGVDKALEAKLGEMTDDEIEAIGAGDQGMMFGFACDETPVLMPMPIYLAHKLARRLAYVRKGGILPYLRPDGKTQVTVEYEDDR----PIRVDTIVVSTQHSPEVTHAQIEADVIEHVIKPIIPEGMLDKNT 231          
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_BACHD (S-adenosylmethionine synthetase OS=Bacillus halodurans GN=metK PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.083e-65
Identity = 131/232 (56.47%), Postives = 166/232 (71.55%), Query Frame = 3
Query:   90 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRP--------EEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKT 761
            LFTSESV EGHPDK+CDQISD+ILD  L++DP+++VACET   T LV+V GEITT   V+  K+VRDT RNIG+     G D++ C VL  I++QSPDIAQGV+  L  R         E IGAGDQG MFGYA +ETPE MPL   L+ +L  +L+E RK    P+LRPDGKTQVTVE Y+EN     VR+ T++ISTQH   VT ++I +DLK+HVI+ V+PE+ +DE+T
Sbjct:    9 LFTSESVTEGHPDKICDQISDSILDEILKEDPNARVACETSVTTGLVLVAGEITTSTYVDIPKVVRDTIRNIGYTRAKYGFDSETCAVLTSIDEQSPDIAQGVNQALEAREGQMTDAEIEAIGAGDQGLMFGYANNETPELMPLPISLSHKLARRLSEARKGEILPYLRPDGKTQVTVE-YDENDQ--SVRIDTIVISTQHHPEVTLEQIESDLKQHVIRSVVPEELIDEET 237          
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_CLOTH (S-adenosylmethionine synthetase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=metK PE=3 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.847e-65
Identity = 135/232 (58.19%), Postives = 157/232 (67.67%), Query Frame = 3
Query:   90 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRP--------EEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKT 761
            LFTSESV EGHPDK+CDQISDA+LDA   QDP ++VACET   T LV+V GEITT   V+  KIVR T R IG+     G D D C VL  I++QSPDIA GV+  L  +         E IGAGDQG MFG+A DETPE MP+   LA +L  +L++VRKNGT  +LRPDGK+QVTVEY  +     PVRV TVLISTQH   V  D I  D+ EHVIKPVIP + LD KT
Sbjct:    5 LFTSESVTEGHPDKICDQISDAVLDAIFSQDPMARVACETAVTTGLVLVTGEITTNCYVDIPKIVRSTIREIGYDRAKYGFDCDTCAVLTSIDEQSPDIAMGVNKALEAKTGEMSDEEIEAIGAGDQGMMFGFACDETPELMPMPISLAHKLAMRLSQVRKNGTLNYLRPDGKSQVTVEYDGDK----PVRVDTVLISTQHGPEVDYDTIKRDVIEHVIKPVIPAELLDSKT 232          
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_CLONN (S-adenosylmethionine synthetase OS=Clostridium novyi (strain NT) GN=metK PE=3 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.847e-65
Identity = 128/233 (54.94%), Postives = 162/233 (69.53%), Query Frame = 3
Query:   90 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRP------EEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 770
            LFTSESV EGHPDK+CDQISDAILDA L+ DP+ +VACET   T +VMV GEI+T   V+  K+VR+   +IG+     G DA+ C VL  I++QS DIA GV   L  R       E IGAGDQG MFG+AT+ET E+MPL   +A +L  KL EVRKNGT  +LRPDGKTQVTVEY +      PVR+  V++STQHD  VT ++I  D+ EHVIK V+P ++LD++T ++
Sbjct:    4 LFTSESVTEGHPDKMCDQISDAILDAILKNDPNGRVACETAVTTGMVMVMGEISTNCYVDIPKVVREVISDIGYTRAKYGFDAETCSVLTSIDEQSQDIAMGVDEALESRQGQKDDVEAIGAGDQGIMFGFATNETKEYMPLPINMAHKLSRKLAEVRKNGTLAYLRPDGKTQVTVEYEDNK----PVRIDAVVVSTQHDPEVTQEQIQKDIMEHVIKTVVPNEWLDDETKYY 232          
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_CLOBM (S-adenosylmethionine synthetase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=metK PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 5.373e-65
Identity = 127/230 (55.22%), Postives = 163/230 (70.87%), Query Frame = 3
Query:   90 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEE------IGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKT 761
            LFTSESV EGHPDK+CDQISDA+LDA L++DP+ +VACET   T +VMV GEI+TK  V+  K+VR+T R IG+     G D + C V+  I++QS DIA GV   L  +  E      +GAGDQG MFG+AT+ET E+MP+   +A +L  +L+EVRKNGT P+LRPDGKTQVTVEY  ENG   PVR+  ++ISTQH   V  ++I  D+KEHVIK ++P + LDE T
Sbjct:    4 LFTSESVTEGHPDKICDQISDAVLDAILDKDPNGRVACETAVTTGMVMVMGEISTKCYVDIPKLVRETIRGIGYDRAKYGFDCETCSVITSIDEQSVDIAMGVDEALESKKGEMDKLDAVGAGDQGMMFGFATNETKEYMPMPIEMAHKLSRRLSEVRKNGTLPYLRPDGKTQVTVEY--ENGK--PVRIDAIVISTQHGPEVYLEQIEKDIKEHVIKVIVPSELLDENT 229          
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_CLOBL (S-adenosylmethionine synthetase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=metK PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 5.373e-65
Identity = 127/230 (55.22%), Postives = 163/230 (70.87%), Query Frame = 3
Query:   90 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEE------IGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKT 761
            LFTSESV EGHPDK+CDQISDA+LDA L++DP+ +VACET   T +VMV GEI+TK  V+  K+VR+T R IG+     G D + C V+  I++QS DIA GV   L  +  E      +GAGDQG MFG+AT+ET E+MP+   +A +L  +L+EVRKNGT P+LRPDGKTQVTVEY  ENG   PVR+  ++ISTQH   V  ++I  D+KEHVIK ++P + LDE T
Sbjct:    4 LFTSESVTEGHPDKICDQISDAVLDAILDKDPNGRVACETAVTTGMVMVMGEISTKCYVDIPKLVRETIRGIGYDRAKYGFDCETCSVITSIDEQSVDIAMGVDEALESKKGEMDRLDAVGAGDQGMMFGFATNETKEYMPMPIEMAHKLSRRLSEVRKNGTLPYLRPDGKTQVTVEY--ENGK--PVRIDAIVISTQHGPEVYLEQIEKDIKEHVIKVIVPSELLDENT 229          
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_CLOBH (S-adenosylmethionine synthetase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 5.373e-65
Identity = 127/230 (55.22%), Postives = 163/230 (70.87%), Query Frame = 3
Query:   90 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEE------IGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKT 761
            LFTSESV EGHPDK+CDQISDA+LDA L++DP+ +VACET   T +VMV GEI+TK  V+  K+VR+T R IG+     G D + C V+  I++QS DIA GV   L  +  E      +GAGDQG MFG+AT+ET E+MP+   +A +L  +L+EVRKNGT P+LRPDGKTQVTVEY  ENG   PVR+  ++ISTQH   V  ++I  D+KEHVIK ++P + LDE T
Sbjct:    4 LFTSESVTEGHPDKICDQISDAVLDAILDKDPNGRVACETAVTTGMVMVMGEISTKCYVDIPKLVRETIRGIGYDRAKYGFDCETCSVITSIDEQSVDIAMGVDEALESKKGEMDKLDAVGAGDQGMMFGFATNETKEYMPMPIEMAHKLSRRLSEVRKNGTLPYLRPDGKTQVTVEY--ENGK--PVRIDAIVISTQHGPEVYLEQIEKDIKEHVIKVIVPSELLDENT 229          
The following BLAST results are available for this feature:
BLAST of DY262454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_GEOKA3.721e-6657.33S-adenosylmethionine synthetase OS=Geobacillus kau... [more]
METK_LACSS4.860e-6657.51S-adenosylmethionine synthetase OS=Lactobacillus s... [more]
METK_CARHZ4.860e-6656.47S-adenosylmethionine synthetase OS=Carboxydothermu... [more]
METK_CALS86.347e-6656.47S-adenosylmethionine synthetase OS=Caldicellulosir... [more]
METK_BACHD1.083e-6556.47S-adenosylmethionine synthetase OS=Bacillus halodu... [more]
METK_CLOTH1.847e-6558.19S-adenosylmethionine synthetase OS=Clostridium the... [more]
METK_CLONN1.847e-6554.94S-adenosylmethionine synthetase OS=Clostridium nov... [more]
METK_CLOBM5.373e-6555.22S-adenosylmethionine synthetase OS=Clostridium bot... [more]
METK_CLOBL5.373e-6555.22S-adenosylmethionine synthetase OS=Clostridium bot... [more]
METK_CLOBH5.373e-6555.22S-adenosylmethionine synthetase OS=Clostridium bot... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AB02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262454 ID=DY262454; Name=DY262454; organism=Citrus clementina; type=EST; length=772bp
CCCCTCTATTTCTTCTTTCTCTGGTCAGCTTTCTCTCAATTCTAGATCTA
CCCGGTTCGCAGTTTTTGAAGAAAAATATGGAGACTTTTTTGTTCACTTC
AGAATCTGTGAACGAGGGTCATCCAGACAAGCTCTGTGATCAGATCTCCG
ATGCCATTCTCGATGCTTGTCTCGAACAAGACCCAGATAGCAAGGTGGCT
TGTGAAACCTGTACCAAGACTAACTTGGTTATGGTTTTTGGAGAGATCAC
AACCAAAGCTAATGTTAATTACGAGAAAATTGTTCGTGACACTTGCCGCA
ACATTGGATTTGTCTCTGATGATGTGGGTTTGGATGCTGATAACTGTAAG
GTTTTGGTTTACATTGAGCAACAAAGCCCTGATATCGCCCAGGGCGTTCA
TGGTCATTTGTCTAAACGCCCCGAGGAAATCGGTGCTGGTGATCAGGGGC
ATATGTTTGGTTATGCTACCGATGAGACTCCTGAATTTATGCCTCTGAGT
CATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACCGAGGTTCGAAAGAA
TGGCACTTGCCCTTGGTTGAGGCCTGATGGCAAGACACAAGTTACTGTTG
AGTATTACAATGAGAATGGTGCTATGGTTCCTGTGAGAGTTCACACAGTT
TTGATCTCTACTCAGCATGACGAAACTGTGACTAATGATGAGATCGCTGC
TGATTTGAAAGAGCATGTGATCAAGCCTGTTATTCCTGAGAAGTACCTTG
ATGAGAAGACTATCTTCCATCT
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