DY262454

Overview
NameDY262454
Unique NameDY262454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length772
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15105 contig Ccv1_Contig15105:13..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_SHESM (S-adenosylmethionine synthetase OS=Shewanella sp. (strain MR-4) GN=metK PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.559e-56
Identity = 115/228 (50.44%), Postives = 152/228 (66.67%), Query Frame = 3
Query:   78 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKT 761
            M   LFTSESV+EGHPDK+ DQISDA+LDA L QDP ++VACET  KT +V+V GE+TT A V+ E++ R T R IG+V  D+G DAD+C VL  I +QSPDI QGV       P+E GAGDQG MFGYA++ET   MP     A  L  + +EVRK+GT PWLRPD K+QVT  Y +       V +  +++STQH   +   ++   + E +IKPV+P ++L++ T
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILAQDPKARVACETYVKTGMVLVGGEVTTSAWVDIEELTRKTVREIGYVHSDMGFDADSCAVLNAIGKQSPDINQGVD---RADPKEQGAGDQGLMFGYASNETDILMPAPITYAHALVKRQSEVRKDGTLPWLRPDAKSQVTFAYEDNK----IVGIDAIVLSTQHSPDIAQADLIEGVMETIIKPVLPAQWLNKDT 221          
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_SHESA (S-adenosylmethionine synthetase OS=Shewanella sp. (strain ANA-3) GN=metK PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.559e-56
Identity = 115/228 (50.44%), Postives = 152/228 (66.67%), Query Frame = 3
Query:   78 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKT 761
            M   LFTSESV+EGHPDK+ DQISDA+LDA L QDP ++VACET  KT +V+V GE+TT A V+ E++ R T R IG+V  D+G DAD+C VL  I +QSPDI QGV       P+E GAGDQG MFGYA++ET   MP     A  L  + +EVRK+GT PWLRPD K+QVT  Y +       V +  +++STQH   +   ++   + E +IKPV+P ++L++ T
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILAQDPKARVACETYVKTGMVLVGGEVTTSAWVDIEELTRKTVREIGYVHSDMGFDADSCAVLNAIGKQSPDINQGVD---RADPKEQGAGDQGLMFGYASNETDILMPAPITYAHALVKRQSEVRKDGTLPWLRPDAKSQVTFAYEDNK----IVGIDAIVLSTQHSPDIAQADLIEGVMETIIKPVLPAQWLNKDT 221          
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_BORPD (S-adenosylmethionine synthetase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=metK PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.559e-56
Identity = 118/230 (51.30%), Postives = 152/230 (66.09%), Query Frame = 3
Query:   87 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEI---GAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 767
            FLFTSESV+EGHPDK+ DQISDAILDA   QDP+++VA ET   T LV++ GEITT ANV+Y ++ RDT R IG+ + D G+D   C VLV  ++QSPDIAQGV     ++ E+    GAGDQG MFGYA DETP+ MP     A +L  + +E+RK+G  PWLRPD K+QVT  Y +      PV V TV++STQH   ++   I   + E +IKP  PE  +  +T F
Sbjct:    6 FLFTSESVSEGHPDKVADQISDAILDAIFTQDPNARVAAETLCNTGLVVLAGEITTTANVDYIQVARDTIRRIGYDNTDYGIDYKGCAVLVAYDKQSPDIAQGV----DRKSEDYLNQGAGDQGLMFGYACDETPDLMPAPIWYAHRLVQRQSELRKDGRLPWLRPDAKSQVTFRYVDGR----PVEVDTVVLSTQHAPEISQSAIHEAVIEDIIKPSFPEGLITPRTKF 227          
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_STAES (S-adenosylmethionine synthetase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=metK PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.955e-56
Identity = 117/234 (50.00%), Postives = 155/234 (66.24%), Query Frame = 3
Query:   90 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKR----PEEI---GAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 770
            LFTSESV EGHPDK+ DQ+SDAILD  L+ DP+++VACET   T + ++ GEI+T   V+  K+VR+T ++IG+     G D+    VL  I++QSPDIAQGV   L  R     EEI   GAGDQG MFGYATDET  +MPL   L+ QL  +L +VRK+    +LRPDGK QVTVEY  ++    P R+ T+++STQH E V   +I  D+K HVI P + +  LD++T F+
Sbjct:    7 LFTSESVTEGHPDKIADQVSDAILDEILKDDPNARVACETTVTTGMALISGEISTTTYVDIPKVVRETIKDIGYTRAKYGYDSQTMAVLTAIDEQSPDIAQGVDKALEYRNDISEEEIEATGAGDQGLMFGYATDETDTYMPLPIFLSHQLAKRLADVRKDEILDYLRPDGKVQVTVEYGEDD---KPRRIDTIVVSTQHAEDVELAQIEKDIKTHVIYPTVDKALLDDETKFY 237          
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_STAEQ (S-adenosylmethionine synthetase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=metK PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.955e-56
Identity = 117/234 (50.00%), Postives = 155/234 (66.24%), Query Frame = 3
Query:   90 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKR----PEEI---GAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 770
            LFTSESV EGHPDK+ DQ+SDAILD  L+ DP+++VACET   T + ++ GEI+T   V+  K+VR+T ++IG+     G D+    VL  I++QSPDIAQGV   L  R     EEI   GAGDQG MFGYATDET  +MPL   L+ QL  +L +VRK+    +LRPDGK QVTVEY  ++    P R+ T+++STQH E V   +I  D+K HVI P + +  LD++T F+
Sbjct:    7 LFTSESVTEGHPDKIADQVSDAILDEILKDDPNARVACETTVTTGMALISGEISTTTYVDIPKVVRETIKDIGYTRAKYGYDSQTMAVLTAIDEQSPDIAQGVDKALEYRNDISEEEIEATGAGDQGLMFGYATDETDTYMPLPIFLSHQLAKRLADVRKDEILDYLRPDGKVQVTVEYGEDD---KPRRIDTIVVSTQHAEDVELAQIEKDIKTHVIYPTVDKALLDDETKFY 237          
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_SHESH (S-adenosylmethionine synthetase OS=Shewanella sediminis (strain HAW-EB3) GN=metK PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.955e-56
Identity = 117/228 (51.32%), Postives = 152/228 (66.67%), Query Frame = 3
Query:   78 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKT 761
            M   LFTSESV+EGHPDK+ DQISDA+LDA LEQDP ++VACET  KT +VMV GE+TT A V+ E+I R T R IG+   D+G DAD+C VL  I +QSPDI QGV       P+E GAGDQG MFGYA +ET   MP     A  L  + +EVRK  T PWLRPD K+QVT  Y +       V +  +++STQH ++V+  ++   + E +IKPV+P ++L++ T
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVMVGGEVTTSAWVDIEEITRKTVREIGYTHSDMGFDADSCAVLNAIGKQSPDINQGVD---RADPKEQGAGDQGLMFGYANNETELLMPAPITYAHALVKRQSEVRKAKTLPWLRPDAKSQVTFAYEDHK----IVGIDAIVLSTQHCDSVSQADLIEGVMETIIKPVLPAQWLNKDT 221          
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_MOOTA (S-adenosylmethionine synthetase OS=Moorella thermoacetica (strain ATCC 39073) GN=metK PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.955e-56
Identity = 117/231 (50.65%), Postives = 149/231 (64.50%), Query Frame = 3
Query:   90 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVH-------GHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKT 761
            LFTSESV EGHPDK+ D+I+DA+LDA   +D  ++VACE    T L++V G+ITT   V+  ++ R+T R IG+     G D D C V+  I++QSPDIA GV+       G      E +GAGDQG MFGYAT ETPEFMP+   LA  L  +L  VRK    P+LRPDGK+QVTVEY  E+G   PVRV TV+ISTQH   +    +  ++ E VIKPVIP + LD +T
Sbjct:    5 LFTSESVTEGHPDKIADRIADAVLDAIYAKDNQARVACECLVSTGLILVAGQITTDCYVDIPRVARETVREIGYTRAKFGFDCDTCAVITSIDEQSPDIAMGVNEAWEKKQGEARDEVETLGAGDQGMMFGYATSETPEFMPMPIALAHALTRRLAAVRKERILPYLRPDGKSQVTVEY--EDGR--PVRVDTVVISTQHRPDIDMATLRDEVLETVIKPVIPAEMLDNRT 231          
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_BIFAA (S-adenosylmethionine synthetase OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=metK PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.955e-56
Identity = 121/233 (51.93%), Postives = 148/233 (63.52%), Query Frame = 3
Query:   81 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGV---------HGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLD 752
            E  L ++ESV EGHPDK+CDQISDAILD  L QDP S VA ETC       VFGE+T++   + + IVR   RNIG+ S  VGLDAD+C V V + +QSP+I QGV              +R E  GAGDQG MFGYA DET   MPL   LA +L  +L EVRK+G  P LRPDGKTQVT+EY +++    PVR+ TVL+STQHD  V    +   L EHVI+PV+ +   D
Sbjct:    3 ELKLISAESVTEGHPDKVCDQISDAILDDMLAQDPHSHVAVETCATVGQFFVFGEVTSEGYSDIQNIVRSVVRNIGYTSSRVGLDADSCGVTVSLTEQSPEINQGVARLSGEEESKASREQRYEAQGAGDQGVMFGYACDETDVLMPLPIHLAHRLAYRLAEVRKSGEVPHLRPDGKTQVTIEYDDDDH---PVRLDTVLVSTQHDPEVDQAWLKEQLTEHVIRPVLDDVLAD 232          
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_LACLM (S-adenosylmethionine synthetase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=metK PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 7.777e-56
Identity = 123/236 (52.12%), Postives = 156/236 (66.10%), Query Frame = 3
Query:   81 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGV---------HGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKT 761
            E  LFTSESV+EGHPDK+ DQISDAILDA L QDP + VACET   T  V VFGEI+T A V+   +VR+T + IG+   + G D  +  V V + +QS DIAQGV         +G L    + IGAGDQG MFG+AT+ET E+MPL+  L+ +L  KL ++RK+G   +LRPD K+QVTVEY N   A    RV TV+ISTQH  T TN+EI  D+   VIK +IP + LD++T
Sbjct:    3 EKHLFTSESVSEGHPDKVADQISDAILDAILAQDPHAHVACETVVYTGTVNVFGEISTSAYVDIAHVVRETIKKIGYTDSENGFDYKSVGVHVSLVEQSSDIAQGVNEAEEVRDKNGQLVDPLDLIGAGDQGMMFGFATNETAEYMPLAISLSHKLVKKLADLRKSGEISYLRPDAKSQVTVEYDNNGKAK---RVDTVVISTQHAATATNEEIHDDVINKVIKAIIPAELLDDET 235          
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_BORPE (S-adenosylmethionine synthetase OS=Bordetella pertussis GN=metK PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.016e-55
Identity = 117/227 (51.54%), Postives = 150/227 (66.08%), Query Frame = 3
Query:   87 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 767
            FLFTSESV+EGHPDK+ DQISDAILDA   QDP+++VA ET   T LV++ GEITT ANV+Y ++ RDT R+IG+ + + G+D   C VLV  ++QSPDIAQGV    S+     GAGDQG MFGYA DETP+ MP     A +L  + +E+RK+G  PWLRPD K+QVT  Y +      P  V TV++STQH   ++   I   + E +IKP  PE  +  KT F
Sbjct:    6 FLFTSESVSEGHPDKVADQISDAILDAIFTQDPNARVAAETLCNTGLVVLAGEITTTANVDYIQVARDTIRHIGYDNTEYGIDYKGCAVLVAYDKQSPDIAQGV-DRSSEDYLNQGAGDQGLMFGYACDETPDLMPAPIWYAHRLVQRQSELRKDGRLPWLRPDAKSQVTFRYVDGR----PAEVDTVVLSTQHSPEISQASIREAVIEDIIKPSFPEGLITPKTKF 227          
The following BLAST results are available for this feature:
BLAST of DY262454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_SHESM4.559e-5650.44S-adenosylmethionine synthetase OS=Shewanella sp. ... [more]
METK_SHESA4.559e-5650.44S-adenosylmethionine synthetase OS=Shewanella sp. ... [more]
METK_BORPD4.559e-5651.30S-adenosylmethionine synthetase OS=Bordetella petr... [more]
METK_STAES5.955e-5650.00S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_STAEQ5.955e-5650.00S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_SHESH5.955e-5651.32S-adenosylmethionine synthetase OS=Shewanella sedi... [more]
METK_MOOTA5.955e-5650.65S-adenosylmethionine synthetase OS=Moorella thermo... [more]
METK_BIFAA5.955e-5651.93S-adenosylmethionine synthetase OS=Bifidobacterium... [more]
METK_LACLM7.777e-5652.12S-adenosylmethionine synthetase OS=Lactococcus lac... [more]
METK_BORPE1.016e-5551.54S-adenosylmethionine synthetase OS=Bordetella pert... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AB02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262454 ID=DY262454; Name=DY262454; organism=Citrus clementina; type=EST; length=772bp
CCCCTCTATTTCTTCTTTCTCTGGTCAGCTTTCTCTCAATTCTAGATCTA
CCCGGTTCGCAGTTTTTGAAGAAAAATATGGAGACTTTTTTGTTCACTTC
AGAATCTGTGAACGAGGGTCATCCAGACAAGCTCTGTGATCAGATCTCCG
ATGCCATTCTCGATGCTTGTCTCGAACAAGACCCAGATAGCAAGGTGGCT
TGTGAAACCTGTACCAAGACTAACTTGGTTATGGTTTTTGGAGAGATCAC
AACCAAAGCTAATGTTAATTACGAGAAAATTGTTCGTGACACTTGCCGCA
ACATTGGATTTGTCTCTGATGATGTGGGTTTGGATGCTGATAACTGTAAG
GTTTTGGTTTACATTGAGCAACAAAGCCCTGATATCGCCCAGGGCGTTCA
TGGTCATTTGTCTAAACGCCCCGAGGAAATCGGTGCTGGTGATCAGGGGC
ATATGTTTGGTTATGCTACCGATGAGACTCCTGAATTTATGCCTCTGAGT
CATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACCGAGGTTCGAAAGAA
TGGCACTTGCCCTTGGTTGAGGCCTGATGGCAAGACACAAGTTACTGTTG
AGTATTACAATGAGAATGGTGCTATGGTTCCTGTGAGAGTTCACACAGTT
TTGATCTCTACTCAGCATGACGAAACTGTGACTAATGATGAGATCGCTGC
TGATTTGAAAGAGCATGTGATCAAGCCTGTTATTCCTGAGAAGTACCTTG
ATGAGAAGACTATCTTCCATCT
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