DY262454

Overview
NameDY262454
Unique NameDY262454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length772
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_XYLFA (S-adenosylmethionine synthetase OS=Xylella fastidiosa GN=metK PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.584e-55
Identity = 114/233 (48.93%), Postives = 155/233 (66.52%), Query Frame = 3
Query:   78 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRK--NGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 770
            M ++LFTSESV+EGHPDK+ DQISDA+LDA L QDP ++VACET  KT + ++ GEITT A V+ E + R    +IG+ S DVG D   C VL  I +QSPDI QGV     K+ EE GAGDQG MFGYAT+ET  +MP +  ++ +L  +  ++RK  N   PWLRPD K Q+T+ Y  E+G  V   +  V++STQHD  +   ++   ++E ++KPV+P K+L + T FH
Sbjct:    1 MSSYLFTSESVSEGHPDKVADQISDAVLDAILVQDPRARVACETMVKTGVAIIAGEITTSAWVDLEALTRKVIVDIGYNSSDVGFDGATCGVLNLIGKQSPDINQGVD---RKKAEEQGAGDQGLMFGYATNETDSYMPAAIHISHRLVEQQAKIRKKSNSPLPWLRPDAKAQITLRY--EDG--VASAIDAVVLSTQHDPGIKQKDLVEAVREEILKPVLPSKWLHKGTKFH 226          
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_XYLF2 (S-adenosylmethionine synthetase OS=Xylella fastidiosa (strain M23) GN=metK PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.584e-55
Identity = 114/233 (48.93%), Postives = 155/233 (66.52%), Query Frame = 3
Query:   78 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRK--NGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 770
            M ++LFTSESV+EGHPDK+ DQISDA+LDA L QDP ++VACET  KT + ++ GEITT A V+ E + R    +IG+ S DVG D   C VL  I +QSPDI QGV     K+ EE GAGDQG MFGYAT+ET  +MP +  ++ +L  +  ++RK  N   PWLRPD K Q+T+ Y  E+G  V   +  V++STQHD  +   ++   ++E ++KPV+P K+L + T FH
Sbjct:    1 MSSYLFTSESVSEGHPDKVADQISDAVLDAILVQDPRARVACETMVKTGVAIIAGEITTSAWVDLEALTRKVIVDIGYNSSDVGFDGATCGVLNLIGKQSPDINQGVD---RKKAEEQGAGDQGLMFGYATNETDSYMPAAIHISHRLVEQQAKIRKKSNSLLPWLRPDAKAQITLRY--EDG--VASAIDAVVLSTQHDPGIKQKDLVEAVREEILKPVLPSKWLHKGTKFH 226          
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_THEFY (S-adenosylmethionine synthetase OS=Thermobifida fusca (strain YX) GN=metK PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.584e-55
Identity = 122/233 (52.36%), Postives = 146/233 (62.66%), Query Frame = 3
Query:   78 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEI-------GAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDE-IAADLKEHVIKPVIPEKYLD 752
            M   LFTSESV EGHPDK+ DQISDAILD+ L  DP S+VA ET   T LV V GE+TT   V+   I+R+    IG+ S   G D  +C V V I  QSPDIAQGV      R EEI       GAGDQG MFGYA +ETPE MPL   LA  L  +L EVR++GT P+LRPDGKTQVTVEY        PVR+ TV++S+QH   +   E +  D+KEHV+ PV+    L+
Sbjct:    1 MSRRLFTSESVTEGHPDKIADQISDAILDSMLRDDPHSRVAVETLITTGLVHVAGEVTTSTYVDIPTIIREKILEIGYDSSAKGFDGASCGVSVSIGGQSPDIAQGVDNAYEAREEEIFDDLDRQGAGDQGLMFGYANNETPELMPLPITLAHALSQRLAEVRRDGTIPYLRPDGKTQVTVEYDGNR----PVRLDTVVVSSQHAPDIDLRELLTPDIKEHVVDPVVARYNLE 229          
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_SYNY3 (S-adenosylmethionine synthetase OS=Synechocystis sp. (strain PCC 6803) GN=metK PE=3 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 6.584e-55
Identity = 116/240 (48.33%), Postives = 160/240 (66.67%), Query Frame = 3
Query:   66 LKKNMETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGV-------HGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETV----TNDEIAADLKEHVIKPVIPEKYLD 752
            LK   + +LFTSESV EGHPDK+CDQISD ILDA L  DP+S+VA ET   T L +V GEIT++A++N+ +++R     IG+ + D G  A++C V++ I++QSPDI+QGV       H       ++IGAGDQG MFGYA +ETPE MPL   LA ++  +L+EVRK+G   +LRPDGKTQV++ Y  E+G+  PV + T+LISTQHDE +     ND + A +K  +   V+   + D
Sbjct:    4 LKTLSKRYLFTSESVTEGHPDKVCDQISDTILDALLTLDPNSRVAAETVVNTGLTLVTGEITSQAHINFVELIRQKIAEIGYTNADNGYSANSCAVMLAIDEQSPDISQGVTAAQEQRHALSDDELDKIGAGDQGLMFGYACNETPELMPLPISLAHRIALRLSEVRKSGQLAYLRPDGKTQVSILY--EDGS--PVAIDTILISTQHDEHIGDITDNDAVQAKIKADLWDVVVGHCFSD 239          
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_PSYA2 (S-adenosylmethionine synthetase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=metK PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.584e-55
Identity = 111/227 (48.90%), Postives = 150/227 (66.08%), Query Frame = 3
Query:   90 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 770
            LFTSESV+EGHPDK+ DQISDAILDA L QD  ++VACET  KT  V++ GEITT AN++ E+IVRDT   IG+   D+G D + C V+  + +QSP+IAQGV       PEE GAGDQG MFGYA++ET   MP     A +L  + +E+R+ G  PWLRPD K Q+T++Y        PV +  V++STQHD +++  ++   + E +IK V+P + L   T +H
Sbjct:    6 LFTSESVSEGHPDKMADQISDAILDAILRQDLHARVACETLVKTGAVILAGEITTTANIDVERIVRDTVNGIGYHHSDLGFDGETCAVINMLGKQSPEIAQGVD---RADPEEQGAGDQGLMFGYASNETEVLMPAPIEYAHRLMERQSELRRAGELPWLRPDAKAQITLKYDGSK----PVAIDAVVLSTQHDPSISQADLQEAIMESIIKQVLPAELLHAGTRYH 225          
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_PROM3 (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain MIT 9303) GN=metK PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.584e-55
Identity = 119/245 (48.57%), Postives = 156/245 (63.67%), Query Frame = 3
Query:   78 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDV-GLDADNCKVLVYIEQQSPDIAQGVH---GHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQH--------DETVTNDEIAADLKEHVIKPV---IPEKYLDEKTIF 767
            M  ++FTSESV EGHPDK+CDQ+SDA+LDA L QDP S+VACET   T L ++ GE+T+ + V++  +VR+  R IG+      G DA +C VLV ++QQSPDIAQGV+    H     +++GAGDQG MFGYA D+TPE MPL   LA +L  +L  VR +G+  +L PDGKTQV+V Y N+     PV + T+LISTQH        DE    + I  DL  HV++P    +P K   E T F
Sbjct:    1 MSRYVFTSESVTEGHPDKICDQVSDAVLDALLAQDPSSRVACETVVNTGLCLITGEVTSNSQVDFIHLVRNVIREIGYSGARAGGFDATSCAVLVALDQQSPDIAQGVNEADDHSGDPLDKVGAGDQGIMFGYACDDTPELMPLPISLAHRLARQLAAVRHDGSLSYLLPDGKTQVSVVYENDR----PVAIDTILISTQHTSEVEGISDENGIRERITQDLWTHVVEPATADLPLKPNREATRF 241          
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_DESVV (S-adenosylmethionine synthetase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=metK PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.584e-55
Identity = 112/225 (49.78%), Postives = 150/225 (66.67%), Query Frame = 3
Query:   87 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVI-PEKYLDEK 758
            + FTSESV EGHPDK+ DQISDA+LD  L QDP+S+VACET   T + ++ GEITT+   +   +VR+T RNIG+ S ++G D   C V+  I++QS DIAQGV    +   E+ GAGDQG MFG+A DET   MP     A QL  +LTEVRK+GT    RPDGKTQV+ EY +      PVR++ V++STQH ++ +  +I   +K HVI+P++ P  + DEK
Sbjct:    8 YYFTSESVTEGHPDKVADQISDAVLDVLLAQDPNSRVACETLVTTGMAVIAGEITTRGYADLPHVVRETIRNIGYNSSEMGFDWQTCAVISSIDKQSADIAQGVDRATN---EDQGAGDQGMMFGFACDETATLMPAPIYWAHQLSQRLTEVRKDGTVDIFRPDGKTQVSFEYVDGK----PVRINNVVVSTQHKDSASQADIIDAVKTHVIRPILEPSGFFDEK 225          
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_DESVH (S-adenosylmethionine synthetase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=metK PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.584e-55
Identity = 112/225 (49.78%), Postives = 150/225 (66.67%), Query Frame = 3
Query:   87 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVI-PEKYLDEK 758
            + FTSESV EGHPDK+ DQISDA+LD  L QDP+S+VACET   T + ++ GEITT+   +   +VR+T RNIG+ S ++G D   C V+  I++QS DIAQGV    +   E+ GAGDQG MFG+A DET   MP     A QL  +LTEVRK+GT    RPDGKTQV+ EY +      PVR++ V++STQH ++ +  +I   +K HVI+P++ P  + DEK
Sbjct:    8 YYFTSESVTEGHPDKVADQISDAVLDVLLAQDPNSRVACETLVTTGMAVIAGEITTRGYADLPHVVRETIRNIGYNSSEMGFDWQTCAVISSIDKQSADIAQGVDRATN---EDQGAGDQGMMFGFACDETATLMPAPIYWAHQLSQRLTEVRKDGTVDIFRPDGKTQVSFEYVDGK----PVRINNVVVSTQHKDSASQADIIDAVKTHVIRPILEPSGFFDEK 225          
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_COLP3 (S-adenosylmethionine synthetase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=metK PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.584e-55
Identity = 108/231 (46.75%), Postives = 150/231 (64.94%), Query Frame = 3
Query:   78 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 770
            M    FTSESV+EGHPDK+ DQISDA+LDA + +D  ++VACET  KT + ++ GE++T A V+ EK+ R+   +IG+ S DVG D   C ++  I QQSP+IAQGV       PEE GAGDQG MFGYAT+ETP  MP     + +L  +  E RK+G  PWLRPD K+QVT  Y +      PV + TV++STQH+  +  +++ + + E++I  V+P + L E T +H
Sbjct:    1 MSRHFFTSESVSEGHPDKIADQISDAVLDAIIAKDKHARVACETMVKTGVAIISGEVSTNAWVDLEKLTRNVISDIGYTSSDVGFDGATCGIMNLIGQQSPEIAQGVD---RSNPEEQGAGDQGLMFGYATNETPTLMPAPLYYSHRLVERQAEARKSGVLPWLRPDAKSQVTFIYEDNK----PVAIDTVVLSTQHNPDIKQEDLVSAVMENIINHVLPAELLTEDTKYH 224          
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_XANCB (S-adenosylmethionine synthetase OS=Xanthomonas campestris pv. campestris (strain B100) GN=metK PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 8.599e-55
Identity = 118/235 (50.21%), Postives = 156/235 (66.38%), Query Frame = 3
Query:   78 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMP----LSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 770
            M ++LFTSESV+EGHPDK+ DQISDA+LDA L QD  ++VACET  KT + +V GE+TT A ++ E + R    +IG+ S DVG D + C VL  I +QSPDI QGV     K PE+ GAGDQG MFGYAT+ET  +MP    LSH L  Q  AK+ + +KN    WLRPD K+QVT+ Y  E+G  V   +  V++STQHD  V   ++   ++E ++KPV+P K+L + T FH
Sbjct:    1 MSSYLFTSESVSEGHPDKIADQISDAVLDAILAQDKRARVACETMVKTGVAIVAGEVTTSAWIDLEALTRKVILDIGYNSSDVGFDGETCGVLNLIGKQSPDINQGVD---RKNPEQQGAGDQGLMFGYATNETDSYMPAAIHLSHRLVEQ-QAKIRK-KKNSALSWLRPDAKSQVTLRY--EDG--VATAIDAVVLSTQHDPGVKQKDLIEAVREEILKPVLPAKWLHKGTKFH 226          
The following BLAST results are available for this feature:
BLAST of DY262454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_XYLFA6.584e-5548.93S-adenosylmethionine synthetase OS=Xylella fastidi... [more]
METK_XYLF26.584e-5548.93S-adenosylmethionine synthetase OS=Xylella fastidi... [more]
METK_THEFY6.584e-5552.36S-adenosylmethionine synthetase OS=Thermobifida fu... [more]
METK_SYNY36.584e-5548.33S-adenosylmethionine synthetase OS=Synechocystis s... [more]
METK_PSYA26.584e-5548.90S-adenosylmethionine synthetase OS=Psychrobacter a... [more]
METK_PROM36.584e-5548.57S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_DESVV6.584e-5549.78S-adenosylmethionine synthetase OS=Desulfovibrio v... [more]
METK_DESVH6.584e-5549.78S-adenosylmethionine synthetase OS=Desulfovibrio v... [more]
METK_COLP36.584e-5546.75S-adenosylmethionine synthetase OS=Colwellia psych... [more]
METK_XANCB8.599e-5550.21S-adenosylmethionine synthetase OS=Xanthomonas cam... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA100AB02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262454 ID=DY262454; Name=DY262454; organism=Citrus clementina; type=EST; length=772bp
CCCCTCTATTTCTTCTTTCTCTGGTCAGCTTTCTCTCAATTCTAGATCTA
CCCGGTTCGCAGTTTTTGAAGAAAAATATGGAGACTTTTTTGTTCACTTC
AGAATCTGTGAACGAGGGTCATCCAGACAAGCTCTGTGATCAGATCTCCG
ATGCCATTCTCGATGCTTGTCTCGAACAAGACCCAGATAGCAAGGTGGCT
TGTGAAACCTGTACCAAGACTAACTTGGTTATGGTTTTTGGAGAGATCAC
AACCAAAGCTAATGTTAATTACGAGAAAATTGTTCGTGACACTTGCCGCA
ACATTGGATTTGTCTCTGATGATGTGGGTTTGGATGCTGATAACTGTAAG
GTTTTGGTTTACATTGAGCAACAAAGCCCTGATATCGCCCAGGGCGTTCA
TGGTCATTTGTCTAAACGCCCCGAGGAAATCGGTGCTGGTGATCAGGGGC
ATATGTTTGGTTATGCTACCGATGAGACTCCTGAATTTATGCCTCTGAGT
CATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACCGAGGTTCGAAAGAA
TGGCACTTGCCCTTGGTTGAGGCCTGATGGCAAGACACAAGTTACTGTTG
AGTATTACAATGAGAATGGTGCTATGGTTCCTGTGAGAGTTCACACAGTT
TTGATCTCTACTCAGCATGACGAAACTGTGACTAATGATGAGATCGCTGC
TGATTTGAAAGAGCATGTGATCAAGCCTGTTATTCCTGAGAAGTACCTTG
ATGAGAAGACTATCTTCCATCT
back to top