DY262454

Overview
NameDY262454
Unique NameDY262454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length772
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_CORU7 (S-adenosylmethionine synthetase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=metK PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.916e-54
Identity = 119/231 (51.52%), Postives = 144/231 (62.34%), Query Frame = 3
Query:   78 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVH-------GHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYL 749
            M   LFTSESV EGHPDK+CD ISD ILDA L +DP ++VA ET   T LV V GE+ T   V   ++VRDT + IGF S D+G D   C V V I  QSP+I  GV           +   +  GAGDQG MFGYAT+ETPE+MPL   +A +L  +LTEVRK      LRPDGKTQVT EY   + A  PVR+ TV+ISTQHD   T DE+   L EHV+  V+ ++ L
Sbjct:    1 MSKRLFTSESVTEGHPDKICDAISDTILDAMLTEDPQARVAVETVVTTGLVHVVGEVRTSGYVEIPQLVRDTLKEIGFTSSDMGFDGTTCGVSVSIGAQSPEIGAGVDTSHEVRGSSSTDEDDRQGAGDQGLMFGYATNETPEYMPLPISVAHRLSRRLTEVRKEEIVTGLRPDGKTQVTFEY---DDAGTPVRLDTVVISTQHDPERTQDELRELLSEHVVGHVLADESL 228          
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_CYAP8 (S-adenosylmethionine synthetase OS=Cyanothece sp. (strain PCC 8801) GN=metK PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.502e-54
Identity = 117/230 (50.87%), Postives = 152/230 (66.09%), Query Frame = 3
Query:   87 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRP-------EEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETV--------TNDEIAADLKEHVIKPV 731
            +LF+SESV EGHPDK+CDQISD ILDA L  D  S+VA E    T LV++ GEIT+KA+VN+ ++ R     IG+   D G  A++C VLV I++QSPDI+QGV     +R        ++IGAGDQG MFGYA +ETPEFMPL   LA ++  +L  VRK G  P+LRPDGKTQV++ Y  E+G   PV + T+LISTQH ET+           +I +DL E V++PV
Sbjct:    5 YLFSSESVTEGHPDKICDQISDTILDALLYHDDHSRVAAEVVVNTGLVLITGEITSKAHVNFVELARKKIAEIGYTDADNGFSANSCAVLVAIDEQSPDISQGVSAAHEQRESLSNDELDQIGAGDQGIMFGYACNETPEFMPLPISLAHRISRRLAAVRKMGELPYLRPDGKTQVSIVY--EDGK--PVGIDTILISTQHTETIDSLTENSAVQAKIKSDLWEAVVQPV 230          
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_BAUCH (S-adenosylmethionine synthetase OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=metK PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.502e-54
Identity = 115/230 (50.00%), Postives = 154/230 (66.96%), Query Frame = 3
Query:   78 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 767
            M   LFTSESV+EGHPDK+ DQISD +LDA L QD  ++VACET  KT +V+V GEITT A ++ E++ R+T R+IG+ + ++  DA++C VL  I +QSPDI +G++   +  P E GAGDQG MFGYAT+ET   MP     A +L A+ + VRKNGT PWL PD K+QVT  Y  + G +  V + TV+ STQH E +T   +   + E +IKPV+P + L E T F
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDTVLDAILAQDLKARVACETYVKTGMVLVGGEITTNAWIDIEELTRNTIRDIGYTNSEMKFDANSCAVLSIISKQSPDINKGIN---NIDPREQGAGDQGFMFGYATNETDVLMPAPITYAHRLVARQSLVRKNGTLPWLCPDAKSQVTFAY--DEGKV--VGIDTVVFSTQHVENITLPNLKEAVMEEIIKPVLPIELLSEHTKF 223          
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_XANCP (S-adenosylmethionine synthetase OS=Xanthomonas campestris pv. campestris GN=metK PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.268e-54
Identity = 117/235 (49.79%), Postives = 155/235 (65.96%), Query Frame = 3
Query:   78 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMP----LSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 770
            M ++LFTSESV+EGHPDK+ DQISDA+LDA L QD  ++VACET  KT + +V GE+TT A ++ E + R    +IG+ S DVG D + C VL  I +QSPDI QGV     K PE+ GAGDQG MFGYAT+ET  +MP    LSH L  Q  AK+ + +KN    WLRPD K+QVT+ Y  E+G  V   +  V++ST HD  V   ++   ++E ++KPV+P K+L + T FH
Sbjct:    1 MSSYLFTSESVSEGHPDKIADQISDAVLDAILAQDKRARVACETMVKTGVAIVAGEVTTSAWIDLEALTRKVILDIGYNSSDVGFDGETCGVLNLIGKQSPDINQGVD---RKNPEQQGAGDQGLMFGYATNETDSYMPAAIHLSHRLVEQ-QAKIRK-KKNSALSWLRPDAKSQVTLRY--EDG--VATAIDAVVLSTHHDPGVKQKDLIEAVREEILKPVLPAKWLHKGTKFH 226          
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_NOSP7 (S-adenosylmethionine synthetase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=metK PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.268e-54
Identity = 118/230 (51.30%), Postives = 149/230 (64.78%), Query Frame = 3
Query:   87 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEE-------IGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQH--------DETVTNDEIAADLKEHVIKPV 731
            +LFTSESV EGHPDK+CDQISD ILDA L QDP S+VA E    T LV++ GEITTKANVN+  + R     IG+ + D G  A++  VL+ +++QSPDIAQGV+     R ++       IGAGDQG MFG+A++ETPE MPL   LA ++  +L  VRK G   +LRPDGKTQVTV Y  E+G   PV + T+LISTQH        DE     +I  DL   V++PV
Sbjct:    5 YLFTSESVTEGHPDKICDQISDTILDALLTQDPSSRVAAEVVVNTGLVLITGEITTKANVNFVNLARKKIAEIGYTNADNGFSANSTSVLLALDEQSPDIAQGVNTAQETRQQDSDELFDKIGAGDQGIMFGFASNETPELMPLPISLAHRIARRLAAVRKTGELSYLRPDGKTQVTVVY--EDGR--PVGIDTILISTQHTATIGEITDEAAVQAKIKQDLWSAVVEPV 230          
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_LACLA (S-adenosylmethionine synthetase OS=Lactococcus lactis subsp. lactis GN=metK PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.268e-54
Identity = 121/236 (51.27%), Postives = 157/236 (66.53%), Query Frame = 3
Query:   81 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGV---------HGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKT 761
            E  LFTSESV+EGHPDK+ DQISDAILDA L QDP + VACET   T  V VFGEI+T A V+   +VR+T + IG+   + G D  +  V V + +QS DIAQGV         +G L    + IGAGDQG MFG+AT+ET E+MPL+  L+ +L  KL ++RK+G   +LRPD K+QVTVE Y++NG     R+ TV+ISTQH  +  N+EI  D+   VIK VIP + LD++T
Sbjct:    3 EKHLFTSESVSEGHPDKVADQISDAILDAILAQDPHAHVACETVVYTGTVNVFGEISTSAYVDIAHVVRETIKKIGYTDSENGFDYKSVGVHVSLVEQSSDIAQGVNEAEEVRDKNGQLVDPLDLIGAGDQGMMFGFATNETAEYMPLAISLSHKLVKKLADLRKSGEISYLRPDAKSQVTVE-YDDNGK--AKRIDTVVISTQHAASARNEEIHDDVINKVIKAVIPAELLDDET 235          
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_CORK4 (S-adenosylmethionine synthetase OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=metK PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.268e-54
Identity = 116/224 (51.79%), Postives = 143/224 (63.84%), Query Frame = 3
Query:   90 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKR-------PEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPE 740
            LFTSESV EGHPDK+CD ISD+ILDA L  DPDS VA ET   T  V V GE+  +  V    +VR T RNIGF+S D+G D   C V V I +QS +I  GV   L  R        +  GAGDQG MFGYAT+ETPE+MPL   LA +L  +LT VRK+   P LRPDGKTQVT+ Y ++N    P+R+ T++ISTQHD  V+   +   L+ +VI PVI +
Sbjct:    5 LFTSESVTEGHPDKICDAISDSILDAMLAVDPDSHVAVETVVTTGQVHVVGEVRCRGYVEIPSLVRQTLRNIGFLSSDMGFDGATCGVSVSIGEQSLEIGAGVDTALEARDGAEVEDDDRAGAGDQGLMFGYATNETPEYMPLPIALAHRLARRLTAVRKDDIVPHLRPDGKTQVTLAYNDDNN---PIRIDTIVISTQHDPGVSRQWLEEQLRTNVITPVIKD 225          
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_ACTSZ (S-adenosylmethionine synthetase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=metK PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.268e-54
Identity = 113/228 (49.56%), Postives = 150/228 (65.79%), Query Frame = 3
Query:   78 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKT 761
            M T LFTSESV+EGHPDK+ DQISDA+LD  L+QDP ++VACET  KT + +V GEITT A V+ E + R    +IG+   D+G D  +C VL  I +QS DI QGV     + P + GAGDQG MFGYAT+ET  FMP     A +L  +  +VRK+GT  WLRPD K+Q+T +Y +       V +  V++STQH E+V+  E+   + E +IKPV+P K+LD+ T
Sbjct:    1 MSTHLFTSESVSEGHPDKIADQISDAVLDEILKQDPKARVACETYVKTGMALVGGEITTSAWVDIENLTRQVICDIGYKHSDMGFDGHSCAVLNAIGKQSQDINQGVD---RENPLDQGAGDQGIMFGYATNETEVFMPAPITYAHRLMERQAKVRKDGTLDWLRPDAKSQLTFKYEDNK----IVGIDAVVLSTQHAESVSQKEVHEGVMEEIIKPVLPAKWLDKDT 221          
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_VARPS (S-adenosylmethionine synthetase OS=Variovorax paradoxus (strain S110) GN=metK PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 4.268e-54
Identity = 116/229 (50.66%), Postives = 154/229 (67.25%), Query Frame = 3
Query:   87 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQH--DETVTNDEIAADLK----EHVIKPVIPEKYLDE 755
            FLFTSESV+EGHPDK+ DQISDAILDA  EQDP S+VA ET T T LV++ GEITT A+V+Y ++ RDT + IG+ + D G+D   C V+V  ++QS DIAQGV  H S      GAGDQG MFGYA DETPE MP     A +L  +  ++RK+G  P+LRPD K+QVT+ Y +      P  + TV++STQH  D++ T  ++ A       E +IKPV+P+++L +
Sbjct:    5 FLFTSESVSEGHPDKVADQISDAILDAIFEQDPRSRVAAETLTNTGLVVLAGEITTNAHVDYIQVARDTIKRIGYDNTDYGIDYKGCAVMVCYDKQSNDIAQGV-DHASDDHLNTGAGDQGLMFGYACDETPELMPAPIYYAHRLVERQAQLRKDGRLPFLRPDAKSQVTMRYVDGK----PHSIDTVVLSTQHHPDQSETPTKMKASFNEAIIEEIIKPVLPKEWLKD 228          
BLAST of DY262454 vs. ExPASy Swiss-Prot
Match: METK_RALEJ (S-adenosylmethionine synthetase OS=Ralstonia eutropha (strain JMP134) GN=metK PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 4.268e-54
Identity = 113/223 (50.67%), Postives = 149/223 (66.82%), Query Frame = 3
Query:   87 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDE 755
            FLFTSESV+EGHPDK+ DQISDA+LDA L QD  ++VA ET   T LV++ GEITT ANV+Y ++ RDT + IG+ + + G+D   C VLV  ++QSPDIAQGV    S      GAGDQG MFGYA DETPE MP     + +L  + +++R++G  PWLRPD K+QVTV Y +      P  V TV++STQH   +T  +I   + E +IKPV+P + L +
Sbjct:    5 FLFTSESVSEGHPDKVADQISDAVLDAILAQDKYARVAAETLCNTGLVVLAGEITTTANVDYIQVARDTIKRIGYDNTEYGIDYKGCAVLVAYDKQSPDIAQGV-DRASDDYLNQGAGDQGLMFGYACDETPELMPFPIYYSHRLVERQSQLRRDGRLPWLRPDAKSQVTVRYVDGR----PHSVDTVVLSTQHAPDITQAQIREAVIEEIIKPVLPPEMLKD 222          
The following BLAST results are available for this feature:
BLAST of DY262454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_CORU71.916e-5451.52S-adenosylmethionine synthetase OS=Corynebacterium... [more]
METK_CYAP82.502e-5450.87S-adenosylmethionine synthetase OS=Cyanothece sp. ... [more]
METK_BAUCH2.502e-5450.00S-adenosylmethionine synthetase OS=Baumannia cicad... [more]
METK_XANCP3.268e-5449.79S-adenosylmethionine synthetase OS=Xanthomonas cam... [more]
METK_NOSP73.268e-5451.30S-adenosylmethionine synthetase OS=Nostoc punctifo... [more]
METK_LACLA3.268e-5451.27S-adenosylmethionine synthetase OS=Lactococcus lac... [more]
METK_CORK43.268e-5451.79S-adenosylmethionine synthetase OS=Corynebacterium... [more]
METK_ACTSZ3.268e-5449.56S-adenosylmethionine synthetase OS=Actinobacillus ... [more]
METK_VARPS4.268e-5450.66S-adenosylmethionine synthetase OS=Variovorax para... [more]
METK_RALEJ4.268e-5450.67S-adenosylmethionine synthetase OS=Ralstonia eutro... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AB02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262454 ID=DY262454; Name=DY262454; organism=Citrus clementina; type=EST; length=772bp
CCCCTCTATTTCTTCTTTCTCTGGTCAGCTTTCTCTCAATTCTAGATCTA
CCCGGTTCGCAGTTTTTGAAGAAAAATATGGAGACTTTTTTGTTCACTTC
AGAATCTGTGAACGAGGGTCATCCAGACAAGCTCTGTGATCAGATCTCCG
ATGCCATTCTCGATGCTTGTCTCGAACAAGACCCAGATAGCAAGGTGGCT
TGTGAAACCTGTACCAAGACTAACTTGGTTATGGTTTTTGGAGAGATCAC
AACCAAAGCTAATGTTAATTACGAGAAAATTGTTCGTGACACTTGCCGCA
ACATTGGATTTGTCTCTGATGATGTGGGTTTGGATGCTGATAACTGTAAG
GTTTTGGTTTACATTGAGCAACAAAGCCCTGATATCGCCCAGGGCGTTCA
TGGTCATTTGTCTAAACGCCCCGAGGAAATCGGTGCTGGTGATCAGGGGC
ATATGTTTGGTTATGCTACCGATGAGACTCCTGAATTTATGCCTCTGAGT
CATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACCGAGGTTCGAAAGAA
TGGCACTTGCCCTTGGTTGAGGCCTGATGGCAAGACACAAGTTACTGTTG
AGTATTACAATGAGAATGGTGCTATGGTTCCTGTGAGAGTTCACACAGTT
TTGATCTCTACTCAGCATGACGAAACTGTGACTAATGATGAGATCGCTGC
TGATTTGAAAGAGCATGTGATCAAGCCTGTTATTCCTGAGAAGTACCTTG
ATGAGAAGACTATCTTCCATCT
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