DY262470

Overview
NameDY262470
Unique NameDY262470
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1266
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262470 vs. ExPASy Swiss-Prot
Match: SRP54_SYNY3 (Signal recognition particle protein OS=Synechocystis sp. (strain PCC 6803) GN=ffh PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.348e-14
Identity = 57/204 (27.94%), Postives = 104/204 (50.98%), Query Frame = 2
Query:  386 MFQSIAGKANLDKADLEPALKALK--DRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTP-RRSIDILRD----------VHAAKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEGTRHGSDVVLVDTAGRMQ 958
            MF ++A +       LE A K L+  D++   N+ E + E     +AA +  + +  F  I  + Q A+   ++  + P ++ I I+ D          V  A+ ++ P            K+T  AK+A +L + K S +M A D +R  A++QL+T  +++ VP+F+ G + +P  +A++ +++    G D VL+DTAGR+Q
Sbjct:    1 MFDALADR-------LEDAWKKLRGQDKISESNIKEALQEVRRALLAADVNLQVVKGF--IKDVEQKALGADVISGVNPGQQFIKIVYDELVNLMGESNVPLAQAEQAPTVILMAGLQGTGKTTATAKLALYLRKQKRSALMVATDVYRPAAIDQLKTLGQQIDVPVFDLGSDANPVEIARQGVEKAKELGVDTVLIDTAGRLQ 195          
BLAST of DY262470 vs. ExPASy Swiss-Prot
Match: SRP54_SYNE7 (Signal sequence-binding protein OS=Synechococcus elongatus (strain PCC 7942) GN=ffh PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.427e-13
Identity = 46/187 (24.60%), Postives = 93/187 (49.73%), Query Frame = 2
Query:  398 IAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEGTRHGSDVVLVDTAGRMQ 958
            + G+  + +++++ ALK ++  L+  +V   + ++    V     G ++ S  R        + + LV+++           V  A+  + P            K+T  AK+A  L +   S ++ A D +R  A++QL T  +++ VP+FE G + +P  +A++ +++  + G D V+VDTAGR+Q
Sbjct:   16 LRGQDKISESNVQEALKEVRRALLEADVNLGVVKEFIAQVQEKAVGTQVISGIRPDQQFIKVVYDELVQVMGETH-------VPLAQAAKAPTVILMAGLQGAGKTTATAKLALHLRKEGRSTLLVATDVYRPAAIDQLITLGKQIDVPVFELGSDANPVEIARQGVEKARQEGIDTVIVDTAGRLQ 195          
BLAST of DY262470 vs. ExPASy Swiss-Prot
Match: SRP54_PONAB (Signal recognition particle 54 kDa protein OS=Pongo abelii GN=SRP54 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.748e-12
Identity = 46/192 (23.96%), Postives = 99/192 (51.56%), Query Frame = 2
Query:  380 SSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHA-AKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEGTRHGSDVVLVDTAGR 952
            +S  +S++    +++  L   LK +   L+  +V  ++ ++L E+V ++++ +++AS      ++Q A+ + LV+++ P         V A    + K             K+T  +K+AY+  +      +   DTFR+GA +QL+ +A + ++P +    E DP I+A E +++      ++++VDT+GR
Sbjct:   11 TSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGR 194          
BLAST of DY262470 vs. ExPASy Swiss-Prot
Match: SRP54_MOUSE (Signal recognition particle 54 kDa protein OS=Mus musculus GN=Srp54 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 3.748e-12
Identity = 46/192 (23.96%), Postives = 99/192 (51.56%), Query Frame = 2
Query:  380 SSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHA-AKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEGTRHGSDVVLVDTAGR 952
            +S  +S++    +++  L   LK +   L+  +V  ++ ++L E+V ++++ +++AS      ++Q A+ + LV+++ P         V A    + K             K+T  +K+AY+  +      +   DTFR+GA +QL+ +A + ++P +    E DP I+A E +++      ++++VDT+GR
Sbjct:   11 TSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGR 194          
BLAST of DY262470 vs. ExPASy Swiss-Prot
Match: SRP54_MACFA (Signal recognition particle 54 kDa protein OS=Macaca fascicularis GN=SRP54 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.748e-12
Identity = 46/192 (23.96%), Postives = 99/192 (51.56%), Query Frame = 2
Query:  380 SSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHA-AKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEGTRHGSDVVLVDTAGR 952
            +S  +S++    +++  L   LK +   L+  +V  ++ ++L E+V ++++ +++AS      ++Q A+ + LV+++ P         V A    + K             K+T  +K+AY+  +      +   DTFR+GA +QL+ +A + ++P +    E DP I+A E +++      ++++VDT+GR
Sbjct:   11 TSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGR 194          
BLAST of DY262470 vs. ExPASy Swiss-Prot
Match: SRP54_HUMAN (Signal recognition particle 54 kDa protein OS=Homo sapiens GN=SRP54 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.748e-12
Identity = 46/192 (23.96%), Postives = 99/192 (51.56%), Query Frame = 2
Query:  380 SSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHA-AKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEGTRHGSDVVLVDTAGR 952
            +S  +S++    +++  L   LK +   L+  +V  ++ ++L E+V ++++ +++AS      ++Q A+ + LV+++ P         V A    + K             K+T  +K+AY+  +      +   DTFR+GA +QL+ +A + ++P +    E DP I+A E +++      ++++VDT+GR
Sbjct:   11 TSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGR 194          
BLAST of DY262470 vs. ExPASy Swiss-Prot
Match: SRP54_CANFA (Signal recognition particle 54 kDa protein OS=Canis familiaris GN=SRP54 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.748e-12
Identity = 46/192 (23.96%), Postives = 99/192 (51.56%), Query Frame = 2
Query:  380 SSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHA-AKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEGTRHGSDVVLVDTAGR 952
            +S  +S++    +++  L   LK +   L+  +V  ++ ++L E+V ++++ +++AS      ++Q A+ + LV+++ P         V A    + K             K+T  +K+AY+  +      +   DTFR+GA +QL+ +A + ++P +    E DP I+A E +++      ++++VDT+GR
Sbjct:   11 TSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGR 194          
BLAST of DY262470 vs. ExPASy Swiss-Prot
Match: SRP54_BOVIN (Signal recognition particle 54 kDa protein OS=Bos taurus GN=SRP54 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.748e-12
Identity = 46/192 (23.96%), Postives = 99/192 (51.56%), Query Frame = 2
Query:  380 SSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHA-AKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEGTRHGSDVVLVDTAGR 952
            +S  +S++    +++  L   LK +   L+  +V  ++ ++L E+V ++++ +++AS      ++Q A+ + LV+++ P         V A    + K             K+T  +K+AY+  +      +   DTFR+GA +QL+ +A + ++P +    E DP I+A E +++      ++++VDT+GR
Sbjct:   11 TSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGR 194          
BLAST of DY262470 vs. ExPASy Swiss-Prot
Match: FTSY_ECOLI (Cell division protein ftsY OS=Escherichia coli (strain K12) GN=ftsY PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.748e-12
Identity = 48/170 (28.24%), Postives = 80/170 (47.06%), Query Frame = 2
Query:  452 LKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEGTRHGSDVVLVDTAGRMQD 961
            L+++L+  +V  E   K+  ++      K+L     +  +++  M E L ++  P              E + P+           K+T + K+A    Q   SVM+AA DTFR+ AVEQL+   +R  +P+  +    D A V  +AIQ       DV++ DTAGR+Q+
Sbjct:  231 LEEQLLIADVGVETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNV-----------EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQN 389          
BLAST of DY262470 vs. ExPASy Swiss-Prot
Match: SRP54_RAT (Signal recognition particle 54 kDa protein OS=Rattus norvegicus GN=Srp54 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.895e-12
Identity = 46/192 (23.96%), Postives = 99/192 (51.56%), Query Frame = 2
Query:  380 SSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHA-AKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEGTRHGSDVVLVDTAGR 952
            +S  +S++    +++  L   LK +   L+  +V  ++ ++L E+V ++++ +++AS      ++Q A+ + LV+++ P         V A    + K             K+T  +K+AY+  +      +   DTFR+GA +QL+ +A + ++P +    E DP I+A E +++      ++++VDT+GR
Sbjct:   11 TSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYFYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGR 194          
The following BLAST results are available for this feature:
BLAST of DY262470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
SRP54_SYNY32.348e-1427.94Signal recognition particle protein OS=Synechocyst... [more]
SRP54_SYNE74.427e-1324.60Signal sequence-binding protein OS=Synechococcus e... [more]
SRP54_PONAB3.748e-1223.96Signal recognition particle 54 kDa protein OS=Pong... [more]
SRP54_MOUSE3.748e-1223.96Signal recognition particle 54 kDa protein OS=Mus ... [more]
SRP54_MACFA3.748e-1223.96Signal recognition particle 54 kDa protein OS=Maca... [more]
SRP54_HUMAN3.748e-1223.96Signal recognition particle 54 kDa protein OS=Homo... [more]
SRP54_CANFA3.748e-1223.96Signal recognition particle 54 kDa protein OS=Cani... [more]
SRP54_BOVIN3.748e-1223.96Signal recognition particle 54 kDa protein OS=Bos ... [more]
FTSY_ECOLI3.748e-1228.24Cell division protein ftsY OS=Escherichia coli (st... [more]
SRP54_RAT4.895e-1223.96Signal recognition particle 54 kDa protein OS=Ratt... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AC07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262470 ID=DY262470; Name=DY262470; organism=Citrus clementina; type=EST; length=1266bp
AGAATCTAGGGTAACAGGTGTTGCTAACGGTAAAGAAAATACTAGTTCTA
ATATTGGGGCTTTTGATGTAAGTAAGTTACAGAAGTTAAGAAATAAAGGT
GGTAAGAAAACTGATACTGTTGTTAGCAAGGGTTCAAATCCAGACCCAAA
GAAAAAGATAACAAAGAAGAACAGAGTTTGGGACGATTCGCCTCCAGAGT
CCAAATTGGACTTCACGGATCCTGCAGGTGGAAATGGCAGTAATATCGAG
GTTGAGGCAGCAGATCATGGTGAAAGTATGATGGACAAGGAAGAGGTTTT
CAGCAGTGATAGTGAATCCGAAGAAGATGAAGAAGTGGGTAAGCACAACA
AGCCTGATGCTAAGAAGACGGGCTGGTTTTCATCTATGTTCCAGAGTATT
GCTGGAAAGGCAAACTTGGATAAGGCAGACCTTGAACCCGCTCTGAAAGC
TCTCAAGGATAGGCTCATGACCAAGAATGTTGCTGAGGAGATAGCTGAGA
AACTTTGTGAATCAGTTGCAGCAAGTCTTGAAGGCAAAAAGCTGGCCTCA
TTTACAAGGATTTCTTCAATTGTGCAGGCTGCAATGGAAGAGGCTCTTGT
TCGCATTTTAACTCCTAGGCGTTCCATTGATATATTAAGAGATGTTCACG
CTGCCAAGGAACAACGGAAGCCATATGTAGTTGTTTTCGTTGGTGTTAAT
GGAGTTGGGAAATCTACCAACCTAGCTAAGGTAGCTTACTGGCTTCTTCA
GCACAAGGTCAGTGTTATGATGGCTGCATGTGATACATTCCGCTCTGGCG
CTGTCGAACAGTTGCGAACTCACGCACGCAGGCTCCAGGTCCCTATATTT
GAAAAGGGCTATGAAAAAGATCCTGCAATTGTTGCAAAGGAAGCTATCCA
GGAAGGCACACGGCATGGCTCTGATGTTGTTCTTGTTGATACAGCTGGTC
GGATGCAGGATATGAAGCGCTGATGAGGGCACTGTCAAAGCTTATCTACC
TCAACATCCAGACCTTGTCCTGGTTGTCGGAAAAGCTCCTGTGGGGGAAT
GAATGCTGTGAATTAACTGTTCTAAGTTCAACCAAAAATTAACTTGACCT
GTCGTCCTTCTCCTAATCCCAAAATTGGATTGGAGGGGAAATTTGCTCCA
CTAAAATTTAAAAAAAATTTGAAGGAAAAAGGTGTGGGACCACCCATTTA
CCAAAGTGGGTTTTTTGTTGTCGGGGGAAACCCCCCGGGGAAAGTGTTTC
TTTTTGGGAGAGGGGG
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