DY262470

Overview
NameDY262470
Unique NameDY262470
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1266
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262470 vs. ExPASy Swiss-Prot
Match: FTSY_MYCLE (Cell division protein ftsY homolog OS=Mycobacterium leprae GN=ftsY PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.393e-12
Identity = 51/174 (29.31%), Postives = 84/174 (48.28%), Query Frame = 2
Query:  434 EPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEGTRHGSDVVLVDTAGRM 955
            E + + L+D L+      ++     ESV ++L  + L S     S  +  + + L+  L P    D+ R + A      P            K+T + K+A  L+     V++ A DTFR+ A +QL+T A R+   +       DPA VA +A+ +G   G+DVV++DTAGR+
Sbjct:  160 EDSWQELEDTLLVA----DLGPVATESVMSALRSRLLNSNVHTESDARTMLRDVLISELQP----DMDRSIRALPHADHPAVLLIVGVNGTGKTTTVGKLARVLVADGRRVVLGAADTFRAAAADQLQTWASRVGAELVRGVEGADPASVAFDAVDKGIGAGADVVVIDTAGRL 325          
BLAST of DY262470 vs. ExPASy Swiss-Prot
Match: FTSY_MYCTU (Cell division protein ftsY homolog OS=Mycobacterium tuberculosis GN=ftsY PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.429e-11
Identity = 45/148 (30.41%), Postives = 71/148 (47.97%), Query Frame = 2
Query:  512 SVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEGTRHGSDVVLVDTAGRM 955
            SV + L  +  +   R  +  +A + + L+  L P       R + A      P            K+T + K+A  L+     V++ A DTFR+ A +QL+T A R+   +       DPA VA +A+ +G   G+DVVL+DTAGR+
Sbjct:  174 SVVSQLRSRLASGNVRTEADARAVLRDVLINELQPGMD----RSIRALPHAGHPSVLLVVGVNGTGKTTTVGKLARVLVADGRRVVLGAADTFRAAAADQLQTWAARVGAAVVRGPEGADPASVAFDAVDKGIAAGADVVLIDTAGRL 317          
BLAST of DY262470 vs. ExPASy Swiss-Prot
Match: FTSY_MYCBO (Cell division protein ftsY homolog OS=Mycobacterium bovis GN=ftsY PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.429e-11
Identity = 45/148 (30.41%), Postives = 71/148 (47.97%), Query Frame = 2
Query:  512 SVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEGTRHGSDVVLVDTAGRM 955
            SV + L  +  +   R  +  +A + + L+  L P       R + A      P            K+T + K+A  L+     V++ A DTFR+ A +QL+T A R+   +       DPA VA +A+ +G   G+DVVL+DTAGR+
Sbjct:  174 SVVSQLRSRLASGNVRTEADARAVLRDVLINELQPGMD----RSIRALPHAGHPSVLLVVGVNGTGKTTTVGKLARVLVADGRRVVLGAADTFRAAAADQLQTWAARVGAAVVRGPEGADPASVAFDAVDKGIAAGADVVLIDTAGRL 317          
BLAST of DY262470 vs. ExPASy Swiss-Prot
Match: SR54C_ARATH (Signal recognition particle 54 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=FFC PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.144e-11
Identity = 47/197 (23.86%), Postives = 96/197 (48.73%), Query Frame = 2
Query:  368 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEGTRHGSDVVLVDTAGRMQ 958
            TG   + +  + G+  L K ++   ++ ++  L+  +V+  +  +  +SV+    G  +    +    +   + + LV+++    S     ++  AK    P            K+T  AK+A +L +   S M+ A D +R  A++QL     ++ VP++  G +  PA +AK+ ++E  ++  DVV++DTAGR+Q
Sbjct:   82 TGGLEAAWSKLKGEEVLTKDNIAEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGMGVIRGVKPDQQLVKIVHDELVKLMGGEVS-----ELQFAKSG--PTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAGDVYRPAAIDQLVILGEQVGVPVYTAGTDVKPADIAKQGLKEAKKNNVDVVIMDTAGRLQ 271          
BLAST of DY262470 vs. ExPASy Swiss-Prot
Match: FTSY_BACSU (Cell division protein ftsY homolog OS=Bacillus subtilis GN=ftsY PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 4.144e-11
Identity = 34/84 (40.48%), Postives = 53/84 (63.10%), Query Frame = 2
Query:  710 KSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEGTRHGSDVVLVDTAGRMQD 961
            K+T + K+A+ + Q   SV++AA DTFR+GA+EQL     R  VP+ ++    DPA V  +A+       +DV++ DTAGR+Q+
Sbjct:  133 KTTTIGKLAHKMKQEGKSVVLAAGDTFRAGAIEQLEVWGERTGVPVIKQTAGSDPAAVIYDAVHAAKARNADVLICDTAGRLQN 216          
BLAST of DY262470 vs. ExPASy Swiss-Prot
Match: SRP54_MYCMY (Signal recognition particle protein OS=Mycoplasma mycoides GN=ffh PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.232e-11
Identity = 50/185 (27.03%), Postives = 92/185 (49.73%), Query Frame = 2
Query:  410 ANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRS-IDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNLAKVAYWL-LQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEGTRHGSDVVLVDTAGRMQ 958
            + L++ +++  LK ++  L+  +V  E A+++  +V     G  ++        +   + E LV IL    + +DI          +KP            K+T   K+AY L  ++K  V++   D +R GA+EQL    ++    +FEKG ++DP   A++A++    +  DVV++DTAGR+Q
Sbjct:   22 STLNEENIKETLKEIRLSLLEADVNIEAAKEIINNVKQKALGGYISEGASAHQQMIKIVHEELVNILGKENAPLDI---------NKKPSVVMMVGLQGSGKTTTANKLAYLLNKKNKKKVLLVGLDIYRPGAIEQLVQLGQKTNTQVFEKG-KQDPVKTAEQALEYAKENNFDVVILDTAGRLQ 196          
BLAST of DY262470 vs. ExPASy Swiss-Prot
Match: SR541_ARATH (Signal recognition particle 54 kDa protein 1 OS=Arabidopsis thaliana GN=SRP-54A PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.232e-11
Identity = 47/198 (23.74%), Postives = 89/198 (44.95%), Query Frame = 2
Query:  359 AKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEGTRHGSDVVLVDTAGR 952
            A+  G  +   Q +     +D+  L   L  +   L+  +V+  + EK+  ++   +    LA+      I++ A+ + L R+L P +          A ++ KP            K+T   K AY+  +      +   DTFR+GA +QL+ +A + ++P +    E DP  +A E +    +   D+++VDT+GR
Sbjct:    4 AELGGRITRAIQQMNNVTIIDEKVLNDFLNEITRALLQSDVSFGLVEKMQTNIKKIVNLDDLAAGHNKRLIIEQAIFKELCRMLDPGKPA-------FAPKKAKPSVVMFVGLQGAGKTTTCTKYAYYHQKKGYKAALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDRFKKEKCDLIIVDTSGR 194          
BLAST of DY262470 vs. ExPASy Swiss-Prot
Match: FTSY_BUCAI (Cell division protein ftsY homolog OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ftsY PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.232e-11
Identity = 53/191 (27.75%), Postives = 90/191 (47.12%), Query Frame = 2
Query:  431 LEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRI-------SSIVQAAMEEAL-----VRILTPRRSIDILRDVHAAKE--QRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEGTRHGSDVVLVDTAGRMQD 961
            L+ +LK  K  L  K     +++K+ E +   LE K L +   I       S++++    E L     +  L  R+  +IL+ V    E     P+           K+T +AK+A        S+M+AA DTFR+  +EQL+T  +   +P+  +    DPA V  +A++       DV+++DTAGR+ +
Sbjct:   83 LKKSLKTTKKNLGDKIYQIFLSKKIDEVLFEELEEKMLLADIGINTTNRIISNLIKDVNREDLKNSEKLYFLLKRKMFNILKKVEIPLEISSHSPFVILVVGVNGTGKTTTVAKLAEKYKLEGKSIMLAAADTFRAAGIEQLQTLGKLNNIPVIAQRSGSDPAAVIFDAVKSAKSKKIDVLIIDTAGRLHN 273          
The following BLAST results are available for this feature:
BLAST of DY262470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
FTSY_MYCLE6.393e-1229.31Cell division protein ftsY homolog OS=Mycobacteriu... [more]
FTSY_MYCTU2.429e-1130.41Cell division protein ftsY homolog OS=Mycobacteriu... [more]
FTSY_MYCBO2.429e-1130.41Cell division protein ftsY homolog OS=Mycobacteriu... [more]
SR54C_ARATH4.144e-1123.86Signal recognition particle 54 kDa protein, chloro... [more]
FTSY_BACSU4.144e-1140.48Cell division protein ftsY homolog OS=Bacillus sub... [more]
SRP54_MYCMY9.232e-1127.03Signal recognition particle protein OS=Mycoplasma ... [more]
SR541_ARATH9.232e-1123.74Signal recognition particle 54 kDa protein 1 OS=Ar... [more]
FTSY_BUCAI9.232e-1127.75Cell division protein ftsY homolog OS=Buchnera aph... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AC07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262470 ID=DY262470; Name=DY262470; organism=Citrus clementina; type=EST; length=1266bp
AGAATCTAGGGTAACAGGTGTTGCTAACGGTAAAGAAAATACTAGTTCTA
ATATTGGGGCTTTTGATGTAAGTAAGTTACAGAAGTTAAGAAATAAAGGT
GGTAAGAAAACTGATACTGTTGTTAGCAAGGGTTCAAATCCAGACCCAAA
GAAAAAGATAACAAAGAAGAACAGAGTTTGGGACGATTCGCCTCCAGAGT
CCAAATTGGACTTCACGGATCCTGCAGGTGGAAATGGCAGTAATATCGAG
GTTGAGGCAGCAGATCATGGTGAAAGTATGATGGACAAGGAAGAGGTTTT
CAGCAGTGATAGTGAATCCGAAGAAGATGAAGAAGTGGGTAAGCACAACA
AGCCTGATGCTAAGAAGACGGGCTGGTTTTCATCTATGTTCCAGAGTATT
GCTGGAAAGGCAAACTTGGATAAGGCAGACCTTGAACCCGCTCTGAAAGC
TCTCAAGGATAGGCTCATGACCAAGAATGTTGCTGAGGAGATAGCTGAGA
AACTTTGTGAATCAGTTGCAGCAAGTCTTGAAGGCAAAAAGCTGGCCTCA
TTTACAAGGATTTCTTCAATTGTGCAGGCTGCAATGGAAGAGGCTCTTGT
TCGCATTTTAACTCCTAGGCGTTCCATTGATATATTAAGAGATGTTCACG
CTGCCAAGGAACAACGGAAGCCATATGTAGTTGTTTTCGTTGGTGTTAAT
GGAGTTGGGAAATCTACCAACCTAGCTAAGGTAGCTTACTGGCTTCTTCA
GCACAAGGTCAGTGTTATGATGGCTGCATGTGATACATTCCGCTCTGGCG
CTGTCGAACAGTTGCGAACTCACGCACGCAGGCTCCAGGTCCCTATATTT
GAAAAGGGCTATGAAAAAGATCCTGCAATTGTTGCAAAGGAAGCTATCCA
GGAAGGCACACGGCATGGCTCTGATGTTGTTCTTGTTGATACAGCTGGTC
GGATGCAGGATATGAAGCGCTGATGAGGGCACTGTCAAAGCTTATCTACC
TCAACATCCAGACCTTGTCCTGGTTGTCGGAAAAGCTCCTGTGGGGGAAT
GAATGCTGTGAATTAACTGTTCTAAGTTCAACCAAAAATTAACTTGACCT
GTCGTCCTTCTCCTAATCCCAAAATTGGATTGGAGGGGAAATTTGCTCCA
CTAAAATTTAAAAAAAATTTGAAGGAAAAAGGTGTGGGACCACCCATTTA
CCAAAGTGGGTTTTTTGTTGTCGGGGGAAACCCCCCGGGGAAAGTGTTTC
TTTTTGGGAGAGGGGG
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