DY262472

Overview
NameDY262472
Unique NameDY262472
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1329
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY262472 vs. ExPASy Swiss-Prot
Match: QOR_SALTY (Quinone oxidoreductase OS=Salmonella typhimurium GN=qor PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.394e-11
Identity = 81/329 (24.62%), Postives = 142/329 (43.16%), Query Frame = 3 
Query:  123 RFGGPEVLEVRPNVEVPDLKP--NEVLVRTRAVSINPLDTRMRSGYGRSIFEPLLPLILGRDISGEVAAVGASVRSLTVGQEVFGALHPTAVRGTYADYAVLSEDELTPKPVSVTHADASAIPFAALTAWRALKCAARMSEGQRXXXXXXXXXXXXXXXQFSVASGCHVSATCGS-KSIDRVLAAGAVQAVDYSSKDIELAIK-----GKFDAVLDTIGAPETERLGLNFLKRGGHYMTLHGETAALADHYGLALGLPIATTVLLKKRMQTWYSYGIDYSYIYMRAD-AEXVEKIRKLSETGKLKIPVE*N--IHMTQVKKTHEGKKKR 1076
            + GGPEVL+    VE    +P  +E+ V  +A+ IN +DT +RSG       P LP  LG + +G V+ VG  V  + VG  V   ++  +  G Y+    ++ D+    P +++   A+A     LT +  L+    +   +                Q++ A G  +  T GS +   R L AGA Q ++Y  + I   +K      K   V D++G  +T    L+ L+R G  ++    +  +    G+ LG       +L ++   + +      YI  R +  E   ++  L  +G +K+ V  N    +   ++ HE  + R
Sbjct:    9 KHGGPEVLQT---VEFTPAEPAEHEIQVENKAIGINFIDTYIRSGL---YPPPSLPAGLGTEAAGVVSKVGNGVEHIRVGDRV---VYAQSTLGAYSSVHNVTADKAAILPDAISFEQAAASFLKGLTVFYLLRKTYEVKPDEPFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQRALDAGAWQVINYREESIVERVKEITGGKKVRVVYDSVG-KDTWEASLDCLQRRGLMVSFGNASGPVT---GVNLG-------ILNQKGSLYATRPSLQGYITTREELTEASNELFSLIASGVIKVDVAENQRYALKDARRAHEVLESR 317
The following BLAST results are available for this feature:
BLAST of DY262472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
QOR_SALTY3.394e-1124.62Quinone oxidoreductase OS=Salmonella typhimurium G... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AC09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262472 ID=DY262472; Name=DY262472; organism=Citrus clementina; type=EST; length=1329bp
CCAAAACCAGAACCAAAATGCAAATCCTAAAAGCCCGCAAGAGTGCTAAC
GACTATTTGGTTAGTCCGTTACGGTTCGTGCGATTCCTGGTTACCACTAG
CTGCAGGGCAGTGGTGCTGCCGCGGTTTGGGGGGCCGGAGGTCCTGGAGG
TGCGGCCAAATGTGGAGGTTCCGGATCTCAAGCCCAATGAGGTCCTCGTT
CGTACCCGAGCTGTCTCTATCAATCCACTCGATACAAGAATGCGATCAGG
CTATGGTCGTTCGATATTTGAACCACTTCTACCTCTCATTTTGGGTCGCG
ATATTAGTGGTGAAGTTGCAGCTGTTGGAGCTTCAGTGAGGTCGCTGACT
GTCGGGCAAGAAGTGTTTGGTGCATTGCATCCAACTGCTGTGAGAGGCAC
TTATGCTGACTATGCTGTTCTGTCAGAAGATGAACTCACTCCAAAGCCAG
TATCGGTTACTCATGCGGATGCAAGTGCAATTCCTTTTGCTGCACTGACT
GCATGGCGTGCTCTAAAATGTGCTGCTAGGATGTCTGAGGGGCAAAGGTT
ATTAGTTCTGGGTGGTGGAGGAGCAGTAGGTTTTGCTGCAGTACAGTTTT
CAGTAGCTTCAGGGTGTCATGTTAGTGCTACTTGTGGAAGCAAAAGTATA
GATCGAGTACTGGCAGCTGGTGCTGTGCAAGCTGTTGACTATTCTTCTAA
GGACATTGAATTGGCAATAAAGGGGAAGTTTGATGCAGTTTTGGACACTA
TTGGTGCTCCAGAAACTGAAAGATTGGGCCTCAATTTTTTGAAGAGGGGT
GGACATTATATGACACTTCACGGCGAGACAGCAGCATTGGCTGATCATTA
TGGACTAGCACTCGGGCTGCCTATAGCTACAACTGTTCTACTGAAGAAAC
GGATGCAAACTTGGTATTCTTATGGAATAGACTATTCATACATATACATG
CGGGCTGATGCAGAANGGGTAGAGAAGATTCGCAAGCTATCTGAAACTGG
AAAACTCAAAATACCTGTTGAATAAAACATTCACATGACGCAAGTAAAAA
AAACTCATGAAGGCAAAAAAAAGAGGCTCATTCCCTGGTAAAAGTAGTTC
CGGGAATTTGATTGAAGATTGAAACTATTTAACCCAAAAATGCCTTCCAC
ATTTCTTTGCCAAGGGTTTGGAAGGGGCACCACCGGCCTCCTTTTGGGCC
CCTTTTACCCCCCTTAACCATTTTCACGGGTGTGTTTTCTTAAAAAAAAA
AGGGGTTTTTTTCCCTTGTGTTACAACAAAAACTAAAATATCCAACCTCC
CACAAAAAACCTCAGAAAAAAAAATTTTT
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