DY262476

Overview
NameDY262476
Unique NameDY262476
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1341
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262476 vs. ExPASy Swiss-Prot
Match: TSSP_MOUSE (Thymus-specific serine protease OS=Mus musculus GN=Prss16 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 9.315e-25
Identity = 66/154 (42.86%), Postives = 93/154 (60.39%), Query Frame = 2
Query:  290 LDHFSFADLPTFSQRYLINTDHWVGPNRLGPIFLYCGNEGDIEWFAVNSGFVWDIAPRFGAMLVFPEHRYYGESMPYGSTEVAYQNATTLSYLTAEQALADFAVFITNLKQNLS-AEASPVVLFGGSYGGMLAAWMRLKYPHIAIGALASSAPI 748
            LD F+ +D  TF QRY +N  H  G +   P+FL+ G EG +   +V +G    +AP +GA+++  EHR+YG SMP G  ++A      L YL++  ALAD A     L   L+ + +SP + FGGSY G LA W RLK+PH+   A+ASSAP+
Sbjct:   65 LDPFNASDRRTFLQRYWVNDQHRTGQDV--PVFLHIGGEGSLGPGSVMAGHPAALAPAWGALVISLEHRFYGLSMPAGGLDLAL-----LRYLSSRHALADVASARQALSGLLNVSSSSPWICFGGSYAGSLATWARLKFPHLVFAAVASSAPL 211          
BLAST of DY262476 vs. ExPASy Swiss-Prot
Match: YM9I_CAEEL (Putative serine protease F56F10.1 OS=Caenorhabditis elegans GN=F56F10.1 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 3.101e-20
Identity = 69/210 (32.86%), Postives = 101/210 (48.10%), Query Frame = 2
Query:  290 LDHFSFADLPTFSQRYLINTDHWVGPNRLGPIFLYCGNEG--DIEWFAVNSGFVWDIAPRFGAMLVFPEHRYYGESMPYGSTEVAYQNATTLSYLTAEQALADFAVFITNLKQNLSAEASPVVLFGGSYGGMLAAWMRLKYPHIAIGALASSAPILQFEDIVPPETFYNIVSSDFKRESASCFNTIKESWGELVSVSQKENGLLELTKTF 913
            LDHF   +  T++Q+Y  N    V       IFL  G EG  + +W A  +      A  FGA +   EHR++G+S P     +     ++L YLT +QALAD A FI  + Q    +    V FGGSY G LAAW R KYP + +G++ASSAP+    D      +  +V  D +     C    K+++ ++  ++    G   L   F
Sbjct:   63 LDHFDPYNTKTWNQKYFYNP---VFSRNNSIIFLMIGGEGPENGKWAANPNVQYLQWAKEFGADVFDLEHRFFGDSWP-----IPDMQTSSLRYLTTQQALADLAFFIEFMNQQYGFKNPRWVTFGGSYPGSLAAWFRQKYPQLTVGSVASSAPVNLKLDFY---EYAMVVEDDLRITDPKCAQATKDAFVQMQKLALTAEGRNSLNNHF 261          
BLAST of DY262476 vs. ExPASy Swiss-Prot
Match: YM67_CAEEL (Putative serine protease K12H4.7 OS=Caenorhabditis elegans GN=K12H4.7 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 6.908e-20
Identity = 68/211 (32.23%), Postives = 99/211 (46.92%), Query Frame = 2
Query:  290 LDHFSFADLPTFSQRYLINTDHWVGPNRLGPIFLYCGNEGDIE--WFAVNSGFVWDIAPRFGAMLVFPEHRYYGESMPYGSTEVAYQNATTLSYLTAEQALADFAVFITNLKQNLSAEASPV-VLFGGSYGGMLAAWMRLKYPHIAIGALASSAPILQFEDIVPPETFYNIVSSDFKRESASCFNTIKESWGELVSVSQKENGLLELTKTF 913
            LDHF  +   TF QRY  N + W      GP FL  G EG     W +     + ++A + GA +   EHR+YGE+ P     V       L YL++ QA+ D A FI  +       A+   V FGGSY G LAAW R K+P +   A+ SS P+    D    + +  +V +   R S  C  ++ + +  + S+ Q  +G  +L   F
Sbjct:   67 LDHFDSSVGKTFQQRYYHN-NQWYKAG--GPAFLMLGGEGPESSYWVSYPGLEITNLAAKQGAWVFDIEHRFYGETHPTSDMSVP-----NLKYLSSAQAIEDAAAFIKAMTAKFPQLANAKWVTFGGSYSGALAAWTRAKHPELVYAAVGSSGPVQAEVDF---KEYLEVVQNSITRNSTECAASVTQGFNLVASLLQTSDGRKQLKTAF 266          
The following BLAST results are available for this feature:
BLAST of DY262476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
TSSP_MOUSE9.315e-2542.86Thymus-specific serine protease OS=Mus musculus GN... [more]
YM9I_CAEEL3.101e-2032.86Putative serine protease F56F10.1 OS=Caenorhabditi... [more]
YM67_CAEEL6.908e-2032.23Putative serine protease K12H4.7 OS=Caenorhabditis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA100AD02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262476 ID=DY262476; Name=DY262476; organism=Citrus clementina; type=EST; length=1341bp
CGACATCTAACAGTTTAACAGACGAGCTATCTTTCTCAGTCCTCACTGTC
GCTGAACGCCGAAATTGACAATGCCAAAAACCAGACAGCAAAAGCAAAAC
TCACTGTATCTCTCTCCTGTTATCACCATCGTCATCATCTCCATTTTATC
TCCGTTATCACTTGCATCACAGCCGTCCAAATTCAGGCGGGCCCCACGCT
TCGTCGGAAAATTGTCACACCTAACTGAACCCCCCCAACGACAACAACAG
CAGCAGTACCGGTATGAGACCCGATATTTCGAGCAACGACTCGACCACTT
CAGCTTTGCTGATCTCCCGACATTCTCTCAAAGGTACCTGATCAACACCG
ATCACTGGGTGGGCCCCAACCGTCTGGGTCCCATCTTCCTCTACTGTGGC
AACGAAGGCGACATCGAGTGGTTCGCCGTTAATTCCGGCTTTGTGTGGGA
CATCGCTCCCAGGTTTGGCGCCATGCTTGTCTTTCCCGAGCATCGGTACT
ATGGTGAGTCGATGCCATATGGAAGCACAGAAGTGGCATATCAAAATGCT
ACTACATTATCATATTTGACGGCCGAGCAAGCTCTTGCTGATTTTGCTGT
CTTTATTACTAACCTGAAGCAGAATTTATCGGCTGAAGCTTCTCCCGTAG
TGTTATTTGGTGGATCATATGGTGGAATGTTAGCTGCATGGATGAGGTTA
AAGTATCCTCACATTGCAATTGGTGCGCTTGCTTCATCAGCGCCAATTCT
TCAATTTGAAGATATTGTCCCACCAGAAACATTTTACAACATTGTATCCA
GTGATTTCAAGCGTGAAAGTGCCAGCTGCTTCAACACTATAAAGGAGTCC
TGGGGTGAGTTGGTATCAGTGAGCCAAAAAGAGAATGGACTTCTTGAACT
GACTAAAACTTTCACCTATGTCGGGAGTAAATAGTACAGAGGATCTTGCA
GACTGGTTTGAATCTGCATATAGTTACTTGGCAATGGTGGAATACCATAT
CCTTCTGACCTTATGATGCTTTTGCGGGATACCAAATAAAAAAGGTCTGC
AAAAAAATTGAACATGCCTCAGATGCTACCAGCCTTCTGGAGACGCAAAT
TTTGAGGGAAATAATTGCCTATTAAAAATTAATACTGAAAAAGTTTAACT
GGCTTTTAAATTGGAATAAAGAATCCTCCCCGGCTTGGGGAAGGGGGGGG
AAAAGTGTGCGGGGGAAGGGCCCCTGGAAAAAGGTGTTTTTGCCCAAAGG
TTCCTAATAAATCCAAAAAAAAAATAAAAACAAAGGTTTTTCCCCGCGTC
ATAAAAAAAAATTTAATATATATATTTTTCCTCCCTCTTTT
back to top