DY262482

Overview
NameDY262482
Unique NameDY262482
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1342
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262482 vs. ExPASy Swiss-Prot
Match: EED_DANRE (Polycomb protein eed OS=Danio rerio GN=eed PE=2 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 3.544e-42
Identity = 101/251 (40.24%), Postives = 144/251 (57.37%), Query Frame = 3
Query:  225 KREYRVTNKLQEGK-RPLYAVVFNFIDSRYFN-VFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI-PFSVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASCGMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVF-IASVHSNYVDCNRVAW*FYFIKEC 941
            K  ++  N L+E   +PL+ V FN+        VFATVG NRVT+Y+C   G I  LQSYVD D +E+FYT +W  +     P     G  GIIR+I+    +  K +VGHG++INE++  P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS DF   D+   +I SCGMD+++K+W +  +     +  S+ +   PSK    F ++ + FP F    +H NYVDC R        K C
Sbjct:   81 KYSFKCVNSLKEDHGQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTFDCSSSHPLLAVAGSRGIIRIINHITMQCVKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADF---DLLGEKIMSCGMDHSLKLWRLDSERLQRAIRGSYEYN--PSKTNRPFVSQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSC 326          

HSP 2 Score: 25.409 bits (54), Expect = 3.544e-42
Identity = 9/26 (34.62%), Postives = 14/26 (53.85%), Query Frame = 2
Query:  995 EGTADILQKYPVPECEIWVINFSCGF 1072
            E    IL ++   +C+IW + FS  F
Sbjct:  349 ESNVTILGRFDYSQCDIWYMRFSMDF 374          
BLAST of DY262482 vs. ExPASy Swiss-Prot
Match: ESC_DROVI (Polycomb protein esc OS=Drosophila virilis GN=esc PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 4.620e-42
Identity = 92/214 (42.99%), Postives = 128/214 (59.81%), Query Frame = 3
Query:  318 VFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD-GIPFSVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM--KEFWTYVEKSFTWTDLPS--KFPTKYVQFPVF-IASVHSNYVDCNRVAW*FYFIKEC 941
            VFAT G NR TVY+C   G +  L  Y D D +E FYT +W+ ++    P   A G  G+IRVID+   +   +++GHG +INE++  P K  L++S SKD ++RLWN+QT +CI IF G  GHR+EVLS+DF+     RI S GMD+++K+W +  +EF   +E S T++   S   FPT    FP F    +H NYVDC +    F   K C
Sbjct:   92 VFATAGSNRCTVYECPRKGGLTLLHCYADPDPDEVFYTCAWSYDLKTSAPLLAAAGYRGVIRVIDIEQNEAVDNYIGHGQAINELKFHPHKLQLLLSGSKDHAIRLWNIQTHVCIAIFGGVEGHRDEVLSIDFNMRG-DRIVSSGMDHSLKLWCLNTQEFQHKIELSQTFSQEKSTLPFPTITKHFPDFSTRDIHRNYVDCVQWFGNFVLSKSC 304          

HSP 2 Score: 23.8682 bits (50), Expect = 4.620e-42
Identity = 7/22 (31.82%), Postives = 13/22 (59.09%), Query Frame = 2
Query:  995 EGTADILQKYPVPECEIWVINF 1060
            + +  I+ ++   ECEIW + F
Sbjct:  327 DSSCTIIAEFEYDECEIWFVRF 348          
BLAST of DY262482 vs. ExPASy Swiss-Prot
Match: ESC_DROME (Polycomb protein esc OS=Drosophila melanogaster GN=esc PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 7.844e-42
Identity = 98/250 (39.20%), Postives = 140/250 (56.00%), Query Frame = 3
Query:  216 PSKKREYRVTNKLQEGKRP-LYAVVFN-FIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD-GIPFSVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK--EFWTYVEKSFTWTDLPS--KFPTKYVQFPVF-IASVHSNYVDCNRVAW*FYFIKEC 941
            P  +  Y+    ++E     ++ V FN  +      VFAT G NRVTVY+C   G +  L  Y D D +E FYT +W+ ++    P   A G  G+IRVIDV   +   +++GHG +INE++  P K  L++S SKD ++RLWN+Q+ +CI I  G  GHR+EVLS+DF+     RI S GMD+++K+W +   EF   +E S T++   S   FPT    FP F    +H NYVDC +    F   K C
Sbjct:   56 PKSRAAYKYDTHVKENHGANIFGVAFNTLLGKDEPQVFATAGSNRVTVYECPRQGGMQLLHCYADPDPDEVFYTCAWSYDLKTSSPLLAAAGYRGVIRVIDVEQNEAVGNYIGHGQAINELKFHPHKLQLLLSGSKDHAIRLWNIQSHVCIAILGGVEGHRDEVLSIDFNMRG-DRIVSSGMDHSLKLWCLNTPEFHHKIELSNTFSQEKSTLPFPTVTKHFPDFSTRDIHRNYVDCVQWFGNFVLSKSC 304          

HSP 2 Score: 23.8682 bits (50), Expect = 7.844e-42
Identity = 7/22 (31.82%), Postives = 13/22 (59.09%), Query Frame = 2
Query:  995 EGTADILQKYPVPECEIWVINF 1060
            + +  I+ ++   ECEIW + F
Sbjct:  327 DSSCTIIAEFEYDECEIWFVRF 348          
BLAST of DY262482 vs. ExPASy Swiss-Prot
Match: ESC_MUSDO (Polycomb protein esc OS=Musca domestica GN=esc PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 5.002e-41
Identity = 97/253 (38.34%), Postives = 144/253 (56.92%), Query Frame = 3
Query:  207 SLTPSKKREYRVTNKLQEGK-RPLYAVVFNFIDSRYFN-VFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD-GIPFSVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK--FPTKYVQFPVF-IASVHSNYVDCNRVAW*FYFIKEC 941
            S + +K+  Y+    L+E   + ++ V FN +  +  + VFAT G NR  +Y+C   G +  +  Y D D +E FYT SW+ ++    P     G  G+IRVID+   +   ++VGHG +INE++  P + +L++S SKD ++RLWN+QT +CI IF G  GHR+EVLS+DF      RI S GMD+++K+W +   EF   +E S T+    S+  FPT    FP F    +H NYVDC +    F   K C
Sbjct:   54 SKSKAKRPAYKYDCHLKEDHGQAIFGVSFNHLLGKDQSMVFATAGSNRCNIYECPRKGGLKLIMCYADPDPDEVFYTCSWSYDLKTSAPLLATAGYRGVIRVIDIHRNESVGNYVGHGQAINELKFHPRQANLLLSGSKDHAIRLWNIQTHVCIAIFGGVEGHRDEVLSIDFDLRG-ERIMSSGMDHSLKLWRIDTPEFKDKIEMSRTFNPNKSQLPFPTIMQHFPEFSTRDIHRNYVDCVQWFGDFVLSKSC 305          

HSP 2 Score: 23.483 bits (49), Expect = 5.002e-41
Identity = 12/37 (32.43%), Postives = 20/37 (54.05%), Query Frame = 2
Query: 1010 ILQKYPVPECEIWVINFSCGFHLHGNCHKGIKKGKKF 1120
            I+ ++   ECEIW + F  GF+     HK +  G ++
Sbjct:  333 IISEFNYDECEIWFVRF--GFN---PWHKIVALGNQY 364          
BLAST of DY262482 vs. ExPASy Swiss-Prot
Match: MES6_CAEEL (Polycomb protein mes-6 OS=Caenorhabditis elegans GN=mes-6 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.219e-16
Identity = 98/358 (27.37%), Postives = 146/358 (40.78%), Query Frame = 3
Query:  225 KREYRVTNKLQEG-KRPLYAVVFNF---IDSRYFNVFATVGGNRVTVYQC--------LEGGVIAALQSYVDEDKEESFYTVSWACNV-----DGIPFSVA-GGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW--SMKEFWTYVE-----------------------------KSFTWTDLPSK------------FPTKYVQFPVFIAS-----VHSNYVDCNR--VAW*FYFIKECGQ*NCI-----------VGNKNEGTVAGGRVQLTYFRNTLSQSVKSGSSIF 1061
            KR + +T KL E  K+ +Y   FN    ID       ATVGG+ + +Y          L+             ++EES +TV+W  +      D  PF V  GG  G I VID  + KL       G  IN+IRT P   +L+V AS D+S+R+ +++   C+++  G   H   +LSVD+     + I SCG D+ +  W  S+K+   ++E                             KS    ++P K             P      P++  S     +HS+YVDC R  +   +   K CG    I           V N+  G V   +   T FR   + +V SGS+ F
Sbjct:   24 KRPFVLTAKLLEDQKKAIYGCAFNQYAGIDEE--QAVATVGGSFLHMYSVPIDINNIELQWSCNFPTDKSSKVEREESLFTVTWCYDTYEAENDRNPFKVVTGGTLGHIYVIDYVSRKLSNRLRSVGWEINDIRTCPANSNLIVCASSDQSIRIHHIRNEACLIVIGGLECHAGTILSVDWSTDGDF-ILSCGFDHQLMEWDLSVKQVKEHLERACKALHQDKINVLTQSQDIPYVSKGTMRKSAVSRNIPDKEEDQLLELHRELIPRPSCLLPIYTPSSVSTDMHSDYVDCIRFLIGTNYALSKGCGNEKAIHFWRFGPPKGEVENRIHGNVLRPKSCTTKFR---TMNVPSGSAWF 375          
The following BLAST results are available for this feature:
BLAST of DY262482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
EED_DANRE3.544e-4240.24Polycomb protein eed OS=Danio rerio GN=eed PE=2 SV... [more]
ESC_DROVI4.620e-4242.99Polycomb protein esc OS=Drosophila virilis GN=esc ... [more]
ESC_DROME7.844e-4239.20Polycomb protein esc OS=Drosophila melanogaster GN... [more]
ESC_MUSDO5.002e-4138.34Polycomb protein esc OS=Musca domestica GN=esc PE=... [more]
MES6_CAEEL1.219e-1627.37Polycomb protein mes-6 OS=Caenorhabditis elegans G... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AD08RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262482 ID=DY262482; Name=DY262482; organism=Citrus clementina; type=EST; length=1342bp
ATCGCTTATAAATTATGACGTAGATGATATGTCGGAAAATTTTTCATAAT
TAACTTTATATCAAAGGTAAACATTGCTTTACAAAAATATCCCCAGAATA
CATCGACGAAACGCTTCAGTGGTTTTCTTGCATAGGTTACGCAGTGACGG
GTGCTAACGTGCGCAGGATGGCGAGGACTGCGATCGGCTGCGAGCCACTG
GTAGGATCACTAACGCCGTCGAAAAAACGCGAGTACAGAGTCACTAATAA
GCTCCAAGAAGGCAAGCGTCCTTTGTACGCCGTCGTTTTCAACTTCATCG
ACTCCCGCTACTTCAACGTCTTCGCCACCGTCGGTGGAAATCGCGTAACT
GTATACCAATGTCTTGAGGGGGGTGTTATTGCAGCATTGCAGTCTTATGT
TGATGAAGATAAGGAAGAGTCATTTTATACTGTGAGCTGGGCTTGCAATG
TGGATGGGATCCCCTTCTCAGTGGCAGGAGGCATCAATGGTATCATCCGA
GTAATTGATGTCAGTAATGAGAAACTTCACAAGAGTTTTGTTGGCCATGG
GGATTCAATAAATGAAATCAGGACCCAGCCACTGAAACCCTCACTTGTGG
TGTCTGCAAGCAAAGATGAATCAGTTCGTCTCTGGAATGTGCAAACTGGA
ATATGCATTTTGATATTTGCTGGTGCTGGGGGTCACCGTAATGAAGTTTT
GAGCGTGGACTTTCATCCTTCAGATATCTATCGCATTGCAAGTTGTGGCA
TGGACAACACTGTCAAGATTTGGTCAATGAAAGAGTTCTGGACATATGTA
GAGAAATCATTCACATGGACAGATCTTCCTTCAAAATTTCCCACAAAATA
TGTACAATTCCCTGTCTTCATAGCATCAGTTCATTCAAATTATGTTGACT
GTAATCGGGTGGCTTGGTGATTTTATTTTATCAAAGAGTGTGGACAATGA
AATTGTATTGTGGGAAACAAAAATGAAGGGACAGTCGCCGGGGGGAGGGT
ACAGCTGACATACTTCAGAAATACCCTGTCCCAGAGTGTGAAATCTGGGT
CATCAATTTTTCCTGTGGATTTCATTTACATGGCAACTGCCATAAGGGAA
TAAAAAAAGGGAAAAAATTTTTGGTTGGGGAACTAAAAAAGTAACCCCCC
CCGGTTCCTAATTGCAAGGGGCGGTTCCCCGGGCTCCATCCAAAAATCCC
CCCATTAAAAAAAAAAAGGGCCAGGGGTTCCAAATAAAGGGAAAACCCCC
ACTTCTCTCCCCCTTTTTTGGTGGAGAGAGGGAGAGAAAAAAAAAAATGA
GGCGCCGCGGGGGGAAGTGGACCTATAAACCCCCAACAAAAA
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