DY262489

Overview
NameDY262489
Unique NameDY262489
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1338
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262489 vs. ExPASy Swiss-Prot
Match: TBD_CANFA (Tubulin delta chain OS=Canis familiaris GN=TUBD1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.619e-16
Identity = 69/302 (22.85%), Postives = 137/302 (45.36%), Query Frame = 3
Query:   51 ISIHIGQAGIQVGNACWE-LYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEV-----RTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSL-TASLRFDGALNV---DVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAF 926
            +++ +GQ G Q+G   ++ LY   H   P G     +       +   FFSE   G  + RAV +D+EP VI++      ++G ++   H       KE + NN+A G+   G    +  ++ I+K  + C  L GF +  ++                   Y    K+   ++P       +V+ YNSVL+   L   +D  ++ +N+AI+ IC + ++I++ +++++N++++  + S+   +   +G+ +     + +   NLVP+P    +     P          Q+S + +T S F
Sbjct:    4 VTVQLGQCGNQIGFEVFDALYSDSHC--PQGLCSERENEAYQASSKERFFSEEENGVSIARAVLVDMEPKVINQTLSKAAQSGQWKYAQH--SCFCQKEGSGNNWAYGYSVHGPRHEESIMNLIQKEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQNLQDQYSNSLKMNQIIWPYG-TGEVIVQNYNSVLTLSHLYRSSDALLVHENDAIHKICAKLMNIKQISFSDINQVLAHQLGSVFQPTYSVEGSCHYRRNPLGDLMENLVPHPEFKMLGIRNIP----------QMSENSLTYSTF 290          
BLAST of DY262489 vs. ExPASy Swiss-Prot
Match: TBD_XENTR (Tubulin delta chain OS=Xenopus tropicalis GN=tubd1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.138e-14
Identity = 55/242 (22.73%), Postives = 111/242 (45.87%), Query Frame = 3
Query:   51 ISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNT-----FFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQ---LFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSL 752
            +++ +GQ G QVG   +++ C +   +P      +      +D + T     FF E   G  V RAV +D+EP V+ +  + A R     +      S K+   NN+A G+   G +  D+ +D +RK  + C  L GF    ++                   Y     L   ++P       +V+ YNS+L+   L   +D  ++ +N+ I+ +C + ++I++ ++ ++N++++  + S+
Sbjct:    4 VTVQLGQCGNQVGYEFFDILCSDLHSKPGHSTKRE------NDYYQTVCKEQFFHEEECGDLVTRAVLVDMEPKVVSKTLSMAGRSGKWKYDISSQFSQKQGCGNNWANGYCVHGPKHQDIVMDLVRKQVEKCDRLGGFFTIMSMAGGTGSGMGTFLTRCLRDAYPDSLLLNQVIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLVHENDIIHKVCSQLMNIKQISFRDVNKVIAHQLGSI 238          
BLAST of DY262489 vs. ExPASy Swiss-Prot
Match: TBD_MACFA (Tubulin delta chain OS=Macaca fascicularis GN=TUBD1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.138e-14
Identity = 61/281 (21.71%), Postives = 123/281 (43.77%), Query Frame = 3
Query:   51 ISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAY---RQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSL-----TASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS 869
            +++ +GQ G Q+G   ++   L       G     +           FFSE   G  + RAV +D+EP VI++  + A    R  +        K+ + NN+A G+   G    +  +D IRK  + C    GF +  ++                   Y    K+   ++P       +V+ YNS+L+   L   +D  ++ +N+A++ IC + ++I++ +++++N++++  + S+     +A   F    N  + +   +LVP+P    +     P +S
Sbjct:    4 VTVQLGQCGNQIGFEVFDAL-LSDSHSSQGLCCKRENEAYQASCKERFFSEEENGVPIARAVLVDMEPKVINQTLSKAAQSGRWKYGQHACFCQKQGSGNNWAYGYSVHGPRHEESIMDLIRKEVEKCDSFSGFFIIMSMAGGTGSGIGAFVTQNLQDQYSNSLKMNQIIWPYG-TGEVIVQNYNSILTLSHLYRSSDALLVHENDAVHKICAKLMNIKQISFSDINQVLAHQLGSVFQPTYSAESSFHYRRN-PLGDLMEHLVPHPEFKMLSIRNVPHMS 281          
BLAST of DY262489 vs. ExPASy Swiss-Prot
Match: TBD_HUMAN (Tubulin delta chain OS=Homo sapiens GN=TUBD1 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.310e-14
Identity = 63/282 (22.34%), Postives = 127/282 (45.04%), Query Frame = 3
Query:   51 ISIHIGQAGIQVGNACWE-LYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQ---LFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSL-----TASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS 869
            +++ +GQ G Q+G   ++ L    H  Q    M  ++           FFSE   G  + RAV +D+EP VI+++ + A +     +        K+ + NN+A G+   G    +  ++ IRK  + C    GF +  ++                   Y    K+   ++P       +V+ YNS+L+   L   +D  +L +N+AI+ IC + ++I++ +++++N++++  + S+     +A   F    N  + +   +LVP+P    +     P +S
Sbjct:    4 VTVQLGQCGNQIGFEVFDALLSDSHSSQGLCSMRENEAYQAS--CKERFFSEEENGVPIARAVLVDMEPKVINQMLSKAAQSGQWKYGQHACFCQKQGSGNNWAYGYSVHGPRHEESIMNIIRKEVEKCDSFSGFFIIMSMAGGTGSGLGAFVTQNLEDQYSNSLKMNQIIWPYG-TGEVIVQNYNSILTLSHLYRSSDALLLHENDAIHKICAKLMNIKQISFSDINQVLAHQLGSVFQPTYSAESSFHYRRN-PLGDLMEHLVPHPEFKMLSVRNIPHMS 281          
BLAST of DY262489 vs. ExPASy Swiss-Prot
Match: TBD_MOUSE (Tubulin delta chain OS=Mus musculus GN=Tubd1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.372e-12
Identity = 62/283 (21.91%), Postives = 126/283 (44.52%), Query Frame = 3
Query:   51 ISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAF--NTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAY---RQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSL-TASLRFDGALNV---DVTEFQTNLVPYPRIHFMLSSYAPVISA 872
            +++ +GQ G Q+G   +E++          Q L  K       A     FF E   G  V RAV +D+EP VI++  + A    R  +        K+ + NN+A G+   G +  +  ++ I+   + C  L GF +  ++                   Y    K+   ++P       +V+ YNS+L+   L   +D  ++ +N+A++ IC + ++I++ ++ +LN++++  + S+   +   D + +     + +   +LVP+P    +     P +SA
Sbjct:    4 VTVQLGQCGNQIG---FEVFDALFRDSHCSQGLCSKRDNEAYQASCRERFFREEENGVPVARAVLVDMEPKVINQTLSKAAQSGRWNYGQHTSFCQKQGSGNNWAYGYSVHGPKHEESIMNLIQTEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQKLQDQYSSSLKMNQIIWPYG-TGEVIVQNYNSILTLSHLYRSSDALLIHENDAVHKICAKRMNIKQISFRDLNQVLAHQLGSVFQPTYSEDSSFHYRRNPLGDLMEHLVPHPEFKMLGVRNIPQMSA 282          
BLAST of DY262489 vs. ExPASy Swiss-Prot
Match: TBGN_GUITH (Tubulin gamma chain, nucleomorph OS=Guillardia theta GN=tubG PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 9.968e-11
Identity = 63/314 (20.06%), Postives = 132/314 (42.04%), Query Frame = 3
Query:   45 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAF-NTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVV-EPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSSMMAKCDPRHGKYMA 980
            E +++ +G+ GI  GN  W+    E  +      LSD ++G       N FF E+     +PR +  DL     + +    Y +++   +     ++  N++ +G+Y  G    +L  + +RK  +    ++ F VF+++                  +Y K      +++P    +T V  +PYNSVLS      + D ++   N AI ++  ++      ++  +N ++ + IS +  +L  +  L   ++    N  PY  + F   +   ++S  +    +   S I N   + + +    D + G Y++
Sbjct:    4 EILTLQVGKTGILTGNEFWKSLVREKNL------LSDFSLGKNSPTNDNVFFEESNESFFIPRTIIFDLSERDFNYIMKSNYSKMYDKNRHFILNKNTGNSWLKGYYE-GISNCNLVDNILRKRIEKMNSVKYFNVFNSINGGTGAGLSSYLIEYIRNNYPKSFINCCSIFPDLYGNTQVTFQPYNSVLSIAWQGLYCDSNIFFQNHAIENLLTKNQINNELSFRKVNYIIGKTISIIMNTLNHNFTLETLISPLIVN--PYLNLFFSTINIDILLSKLR----KKRPSMIENKTNQLNEISMNLDLKSGNYLS 304          
The following BLAST results are available for this feature:
BLAST of DY262489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 426
Match NameE-valueIdentityDescription
TBD_CANFA4.619e-1622.85Tubulin delta chain OS=Canis familiaris GN=TUBD1 P... [more]
TBD_XENTR1.138e-1422.73Tubulin delta chain OS=Xenopus tropicalis GN=tubd1... [more]
TBD_MACFA1.138e-1421.71Tubulin delta chain OS=Macaca fascicularis GN=TUBD... [more]
TBD_HUMAN3.310e-1422.34Tubulin delta chain OS=Homo sapiens GN=TUBD1 PE=1 ... [more]
TBD_MOUSE2.372e-1221.91Tubulin delta chain OS=Mus musculus GN=Tubd1 PE=2 ... [more]
TBGN_GUITH9.968e-1120.06Tubulin gamma chain, nucleomorph OS=Guillardia the... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AE03RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262489 ID=DY262489; Name=DY262489; organism=Citrus clementina; type=EST; length=1338bp
CAATTCCCGACTCAAATCTCTAACAAAATCACACAAGAATGAGAGAATGC
ATCTCAATTCACATCGGCCAGGCCGGTATCCAGGTTGGTAATGCCTGCTG
GGAGCTCTATTGCCTCGAACATGGCATTCAGCCTGATGGGCAAATGTTAA
GTGACAAAACAGTCGGAGGCGGAGATGATGCTTTCAACACATTCTTCAGT
GAGACCGGCGCCGGAAAGCACGTGCCACGCGCCGTGTTTTTGGACCTTGA
ACCAACTGTAATCGATGAAGTGAGGACTGGCGCCTACCGTCAGTTATTTC
ACCCGGAGCAACTCATTAGCGGCAAAGAAGATGCTGCTAACAACTTTGCC
AGAGGTCACTACACAATTGGGAAAGAGATTGTGGATTTGTGCCTTGATAG
GATCAGGAAGTTAGCTGATAACTGTACCGGTCTACAAGGGTTCCTCGTGT
TCCACGCGGTTGGTGGAGGAACAGGATCCGGGCTCGGGTCTTTGCTCCTT
GAGAGGCTGTCTGTTGATTACGGCAAGAAATCGAAACTGGGATTTACCGT
TTACCCTTCACCTCAAGTTTCAACCTCAGTTGTTGAGCCTTACAACAGCG
TTTTGTCCACTCACTCTCTGTTAGAACACACTGACGTTTCTGTGTTGCTT
GACAATGAAGCAATCTACGATATTTGTCGCCGCTCACTCGATATCGAGAG
ACCCACTTATACCAATCTCAACAGACTTGTTTCTCAGGTGATTTCTTCAC
TAACGGCGTCTCTTCGTTTTGATGGAGCCTTAAACGTGGATGTGACAGAG
TTCCAAACAAATTTAGTCCCATACCCTCGGATTCACTTCATGCTTTCATC
ATATGCCCCTGTTATCTCAGCAGAGAAGGCCTACCACGAGCAACTATCAG
TGTCAGAAATCACAAACAGCGCATTTGAGCCCTCGTCAATGATGGCAAAA
TGTGACCCCCGCCATGGGAAATACATGGCATGTTGTTTGATGTACAGAAG
AAGACGTGGTACCAAAAGATGTGAACGCAGCAGTGGCAGCAATCAAGACT
AAGAAGAAAATCCAATTCGTGGGACGGGTGCCCAACTGGGGTTCAGGTGG
GGGAACAAATACCCACCCCCCATCGGGTGGTTCCTGTGGGGGGGATTTTG
GCTAAGGGTTCAAAAAGTCTGTGGGTTTAAAATTCAAAAACTAAAAAAAG
TTGGGGTGGAAGGGGTTTTCTCAAAAAATTTAATTAAAAAATTTTGAATT
TTGATTTTTTTCCCCAAAAAAAGGGGGGTTTGTTTGGTTCTTTTTTGTAT
TTGGGTGGGGGGAAAGGGGGGCGGGTGGGGGGAGAGAA
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