DY262489
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY262489 vs. ExPASy Swiss-Prot
Match: TBD_CANFA (Tubulin delta chain OS=Canis familiaris GN=TUBD1 PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 4.619e-16 Identity = 69/302 (22.85%), Postives = 137/302 (45.36%), Query Frame = 3 Query: 51 ISIHIGQAGIQVGNACWE-LYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEV-----RTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSL-TASLRFDGALNV---DVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAF 926 +++ +GQ G Q+G ++ LY H P G + + FFSE G + RAV +D+EP VI++ ++G ++ H KE + NN+A G+ G + ++ I+K + C L GF + ++ Y K+ ++P +V+ YNSVL+ L +D ++ +N+AI+ IC + ++I++ +++++N++++ + S+ + +G+ + + + NLVP+P + P Q+S + +T S F Sbjct: 4 VTVQLGQCGNQIGFEVFDALYSDSHC--PQGLCSERENEAYQASSKERFFSEEENGVSIARAVLVDMEPKVINQTLSKAAQSGQWKYAQH--SCFCQKEGSGNNWAYGYSVHGPRHEESIMNLIQKEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQNLQDQYSNSLKMNQIIWPYG-TGEVIVQNYNSVLTLSHLYRSSDALLVHENDAIHKICAKLMNIKQISFSDINQVLAHQLGSVFQPTYSVEGSCHYRRNPLGDLMENLVPHPEFKMLGIRNIP----------QMSENSLTYSTF 290
BLAST of DY262489 vs. ExPASy Swiss-Prot
Match: TBD_XENTR (Tubulin delta chain OS=Xenopus tropicalis GN=tubd1 PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 1.138e-14 Identity = 55/242 (22.73%), Postives = 111/242 (45.87%), Query Frame = 3 Query: 51 ISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNT-----FFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQ---LFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSL 752 +++ +GQ G QVG +++ C + +P + +D + T FF E G V RAV +D+EP V+ + + A R + S K+ NN+A G+ G + D+ +D +RK + C L GF ++ Y L ++P +V+ YNS+L+ L +D ++ +N+ I+ +C + ++I++ ++ ++N++++ + S+ Sbjct: 4 VTVQLGQCGNQVGYEFFDILCSDLHSKPGHSTKRE------NDYYQTVCKEQFFHEEECGDLVTRAVLVDMEPKVVSKTLSMAGRSGKWKYDISSQFSQKQGCGNNWANGYCVHGPKHQDIVMDLVRKQVEKCDRLGGFFTIMSMAGGTGSGMGTFLTRCLRDAYPDSLLLNQVIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLVHENDIIHKVCSQLMNIKQISFRDVNKVIAHQLGSI 238
BLAST of DY262489 vs. ExPASy Swiss-Prot
Match: TBD_MACFA (Tubulin delta chain OS=Macaca fascicularis GN=TUBD1 PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 1.138e-14 Identity = 61/281 (21.71%), Postives = 123/281 (43.77%), Query Frame = 3 Query: 51 ISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAY---RQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSL-----TASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS 869 +++ +GQ G Q+G ++ L G + FFSE G + RAV +D+EP VI++ + A R + K+ + NN+A G+ G + +D IRK + C GF + ++ Y K+ ++P +V+ YNS+L+ L +D ++ +N+A++ IC + ++I++ +++++N++++ + S+ +A F N + + +LVP+P + P +S Sbjct: 4 VTVQLGQCGNQIGFEVFDAL-LSDSHSSQGLCCKRENEAYQASCKERFFSEEENGVPIARAVLVDMEPKVINQTLSKAAQSGRWKYGQHACFCQKQGSGNNWAYGYSVHGPRHEESIMDLIRKEVEKCDSFSGFFIIMSMAGGTGSGIGAFVTQNLQDQYSNSLKMNQIIWPYG-TGEVIVQNYNSILTLSHLYRSSDALLVHENDAVHKICAKLMNIKQISFSDINQVLAHQLGSVFQPTYSAESSFHYRRN-PLGDLMEHLVPHPEFKMLSIRNVPHMS 281
BLAST of DY262489 vs. ExPASy Swiss-Prot
Match: TBD_HUMAN (Tubulin delta chain OS=Homo sapiens GN=TUBD1 PE=1 SV=2) HSP 1 Score: 80.1073 bits (196), Expect = 3.310e-14 Identity = 63/282 (22.34%), Postives = 127/282 (45.04%), Query Frame = 3 Query: 51 ISIHIGQAGIQVGNACWE-LYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQ---LFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSL-----TASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS 869 +++ +GQ G Q+G ++ L H Q M ++ FFSE G + RAV +D+EP VI+++ + A + + K+ + NN+A G+ G + ++ IRK + C GF + ++ Y K+ ++P +V+ YNS+L+ L +D +L +N+AI+ IC + ++I++ +++++N++++ + S+ +A F N + + +LVP+P + P +S Sbjct: 4 VTVQLGQCGNQIGFEVFDALLSDSHSSQGLCSMRENEAYQAS--CKERFFSEEENGVPIARAVLVDMEPKVINQMLSKAAQSGQWKYGQHACFCQKQGSGNNWAYGYSVHGPRHEESIMNIIRKEVEKCDSFSGFFIIMSMAGGTGSGLGAFVTQNLEDQYSNSLKMNQIIWPYG-TGEVIVQNYNSILTLSHLYRSSDALLLHENDAIHKICAKLMNIKQISFSDINQVLAHQLGSVFQPTYSAESSFHYRRN-PLGDLMEHLVPHPEFKMLSVRNIPHMS 281
BLAST of DY262489 vs. ExPASy Swiss-Prot
Match: TBD_MOUSE (Tubulin delta chain OS=Mus musculus GN=Tubd1 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 2.372e-12 Identity = 62/283 (21.91%), Postives = 126/283 (44.52%), Query Frame = 3 Query: 51 ISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAF--NTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAY---RQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSL-TASLRFDGALNV---DVTEFQTNLVPYPRIHFMLSSYAPVISA 872 +++ +GQ G Q+G +E++ Q L K A FF E G V RAV +D+EP VI++ + A R + K+ + NN+A G+ G + + ++ I+ + C L GF + ++ Y K+ ++P +V+ YNS+L+ L +D ++ +N+A++ IC + ++I++ ++ +LN++++ + S+ + D + + + + +LVP+P + P +SA Sbjct: 4 VTVQLGQCGNQIG---FEVFDALFRDSHCSQGLCSKRDNEAYQASCRERFFREEENGVPVARAVLVDMEPKVINQTLSKAAQSGRWNYGQHTSFCQKQGSGNNWAYGYSVHGPKHEESIMNLIQTEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQKLQDQYSSSLKMNQIIWPYG-TGEVIVQNYNSILTLSHLYRSSDALLIHENDAVHKICAKRMNIKQISFRDLNQVLAHQLGSVFQPTYSEDSSFHYRRNPLGDLMEHLVPHPEFKMLGVRNIPQMSA 282
BLAST of DY262489 vs. ExPASy Swiss-Prot
Match: TBGN_GUITH (Tubulin gamma chain, nucleomorph OS=Guillardia theta GN=tubG PE=3 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 9.968e-11 Identity = 63/314 (20.06%), Postives = 132/314 (42.04%), Query Frame = 3 Query: 45 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAF-NTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVV-EPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSSMMAKCDPRHGKYMA 980 E +++ +G+ GI GN W+ E + LSD ++G N FF E+ +PR + DL + + Y +++ + ++ N++ +G+Y G +L + +RK + ++ F VF+++ +Y K +++P +T V +PYNSVLS + D ++ N AI ++ ++ ++ +N ++ + IS + +L + L ++ N PY + F + ++S + + S I N + + + D + G Y++ Sbjct: 4 EILTLQVGKTGILTGNEFWKSLVREKNL------LSDFSLGKNSPTNDNVFFEESNESFFIPRTIIFDLSERDFNYIMKSNYSKMYDKNRHFILNKNTGNSWLKGYYE-GISNCNLVDNILRKRIEKMNSVKYFNVFNSINGGTGAGLSSYLIEYIRNNYPKSFINCCSIFPDLYGNTQVTFQPYNSVLSIAWQGLYCDSNIFFQNHAIENLLTKNQINNELSFRKVNYIIGKTISIIMNTLNHNFTLETLISPLIVN--PYLNLFFSTINIDILLSKLR----KKRPSMIENKTNQLNEISMNLDLKSGNYLS 304 The following BLAST results are available for this feature:
BLAST of DY262489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 426
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Sequences
The
following sequences are available for this feature:
EST sequence >DY262489 ID=DY262489; Name=DY262489; organism=Citrus clementina; type=EST; length=1338bpback to top |