DY262489 | Citrus Genome Database

Overview


Name	DY262489
Unique Name	DY262489
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	1338

Libraries


Library Name	Type
CitNFL	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of DY262489 vs. ExPASy Swiss-Prot
Match: TBA4A_RAT (Tubulin alpha-4A chain OS=Rattus norvegicus GN=Tuba4a PE=2 SV=1)

HSP 1 Score: 538.495 bits (1386), Expect = 3.133e-153
Identity = 249/320 (77.81%), Postives = 286/320 (89.38%), Query Frame = 3

Query:   39 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 998
            MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+F TFF ETGAGKHVPRAVF+DLEPTVIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+D  LDRIRKL+D CTGLQGFLVFH+                  VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+LDIERPTYTNLNRL+SQ++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSV+EITN+ FEP++ M KCDPRHGKYMACCL+YR
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYR 320

HSP 2 Score: 26.5646 bits (57), Expect = 3.133e-153
Identity = 17/40 (42.50%), Postives = 17/40 (42.50%), Query Frame = 1

Query: 1003 DVVPKDVNXXXXXXXXXXXXQFVGRVPNWGSGGGTNTHPP 1122
            DVVPKDVN            QFV   P  G   G N  PP
Sbjct:  322 DVVPKDVNAAIAAIKTKRSIQFVDWCPT-GFKVGINYQPP 360

BLAST of DY262489 vs. ExPASy Swiss-Prot
Match: TBA4A_MOUSE (Tubulin alpha-4A chain OS=Mus musculus GN=Tuba4a PE=1 SV=1)

HSP 1 Score: 538.495 bits (1386), Expect = 3.133e-153
Identity = 249/320 (77.81%), Postives = 286/320 (89.38%), Query Frame = 3

Query:   39 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 998
            MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+F TFF ETGAGKHVPRAVF+DLEPTVIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+D  LDRIRKL+D CTGLQGFLVFH+                  VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+LDIERPTYTNLNRL+SQ++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSV+EITN+ FEP++ M KCDPRHGKYMACCL+YR
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYR 320

HSP 2 Score: 26.5646 bits (57), Expect = 3.133e-153
Identity = 17/40 (42.50%), Postives = 17/40 (42.50%), Query Frame = 1

Query: 1003 DVVPKDVNXXXXXXXXXXXXQFVGRVPNWGSGGGTNTHPP 1122
            DVVPKDVN            QFV   P  G   G N  PP
Sbjct:  322 DVVPKDVNAAIAAIKTKRSIQFVDWCPT-GFKVGINYQPP 360

BLAST of DY262489 vs. ExPASy Swiss-Prot
Match: TBA4A_MACFA (Tubulin alpha-4A chain OS=Macaca fascicularis GN=TUBA4A PE=2 SV=1)

HSP 1 Score: 538.495 bits (1386), Expect = 3.133e-153
Identity = 249/320 (77.81%), Postives = 286/320 (89.38%), Query Frame = 3

Query:   39 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 998
            MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+F TFF ETGAGKHVPRAVF+DLEPTVIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+D  LDRIRKL+D CTGLQGFLVFH+                  VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+LDIERPTYTNLNRL+SQ++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSV+EITN+ FEP++ M KCDPRHGKYMACCL+YR
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYR 320

HSP 2 Score: 26.5646 bits (57), Expect = 3.133e-153
Identity = 17/40 (42.50%), Postives = 17/40 (42.50%), Query Frame = 1

Query: 1003 DVVPKDVNXXXXXXXXXXXXQFVGRVPNWGSGGGTNTHPP 1122
            DVVPKDVN            QFV   P  G   G N  PP
Sbjct:  322 DVVPKDVNAAIAAIKTKRSIQFVDWCPT-GFKVGINYQPP 360

BLAST of DY262489 vs. ExPASy Swiss-Prot
Match: TBA4A_HUMAN (Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A PE=1 SV=1)

HSP 1 Score: 538.495 bits (1386), Expect = 3.133e-153
Identity = 249/320 (77.81%), Postives = 286/320 (89.38%), Query Frame = 3

Query:   39 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 998
            MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+F TFF ETGAGKHVPRAVF+DLEPTVIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+D  LDRIRKL+D CTGLQGFLVFH+                  VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+LDIERPTYTNLNRL+SQ++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSV+EITN+ FEP++ M KCDPRHGKYMACCL+YR
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYR 320

HSP 2 Score: 26.5646 bits (57), Expect = 3.133e-153
Identity = 17/40 (42.50%), Postives = 17/40 (42.50%), Query Frame = 1

Query: 1003 DVVPKDVNXXXXXXXXXXXXQFVGRVPNWGSGGGTNTHPP 1122
            DVVPKDVN            QFV   P  G   G N  PP
Sbjct:  322 DVVPKDVNAAIAAIKTKRSIQFVDWCPT-GFKVGINYQPP 360

BLAST of DY262489 vs. ExPASy Swiss-Prot
Match: TBA4A_BOVIN (Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=1 SV=2)

HSP 1 Score: 538.495 bits (1386), Expect = 3.133e-153
Identity = 249/320 (77.81%), Postives = 286/320 (89.38%), Query Frame = 3

Query:   39 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 998
            MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+F TFF ETGAGKHVPRAVF+DLEPTVIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+D  LDRIRKL+D CTGLQGFLVFH+                  VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+LDIERPTYTNLNRL+SQ++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSV+EITN+ FEP++ M KCDPRHGKYMACCL+YR
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYR 320

HSP 2 Score: 26.5646 bits (57), Expect = 3.133e-153
Identity = 17/40 (42.50%), Postives = 17/40 (42.50%), Query Frame = 1

Query: 1003 DVVPKDVNXXXXXXXXXXXXQFVGRVPNWGSGGGTNTHPP 1122
            DVVPKDVN            QFV   P  G   G N  PP
Sbjct:  322 DVVPKDVNAAIAAIKTKRSIQFVDWCPT-GFKVGINYQPP 360

BLAST of DY262489 vs. ExPASy Swiss-Prot
Match: TBA2_DROME (Tubulin alpha-2 chain OS=Drosophila melanogaster GN=alphaTub85E PE=1 SV=1)

HSP 1 Score: 535.413 bits (1378), Expect = 2.637e-152
Identity = 248/320 (77.50%), Postives = 285/320 (89.06%), Query Frame = 3

Query:   39 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 998
            MRECIS+HIGQAG+Q+GNACWELYCLEHGIQPDG M SDKTVGGGDD+F+TFFSETGAGKHVPRAVF+DLEPTV+DEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVD+ LDRIRKLAD CTGLQGFLVFH+                  VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+LDIERPTY NLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L++YAPVIS EKAYHEQL+V+EITN+ FEP++ M KCDPR GKYMACC++YR
Sbjct:    1 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGHMPSDKTVGGGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYMNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISVEKAYHEQLTVAEITNACFEPANQMVKCDPRRGKYMACCMLYR 320

HSP 2 Score: 26.5646 bits (57), Expect = 2.637e-152
Identity = 17/40 (42.50%), Postives = 17/40 (42.50%), Query Frame = 1

Query: 1003 DVVPKDVNXXXXXXXXXXXXQFVGRVPNWGSGGGTNTHPP 1122
            DVVPKDVN            QFV   P  G   G N  PP
Sbjct:  322 DVVPKDVNAAIATIKTKRSIQFVDWCPT-GFKVGINYQPP 360

BLAST of DY262489 vs. ExPASy Swiss-Prot
Match: TBA5_CHICK (Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 533.487 bits (1373), Expect = 9.985e-152
Identity = 247/320 (77.19%), Postives = 282/320 (88.12%), Query Frame = 3

Query:   39 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 998
            MRECIS+H+GQAG+Q+GN CWELYCLEHGIQPDGQM SDKT+GGGDD+F TFF ETGAGKHVPRA+F+DLEPTVIDEVR G YRQLFHPEQLI+GKED ANN+ARGHYTIGKEI+D  LDRIRKLAD CTGLQGFL FH+                   DYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+LDIERPTYTNLNRL+SQ++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSV+EITNS FEP++ M KCDPRHGKYMACCL+YR
Sbjct:    1 MRECISVHVGQAGVQMGNTCWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAIFVDLEPTVIDEVRAGIYRQLFHPEQLITGKEDGANNYARGHYTIGKEIIDQVLDRIRKLADQCTGLQGFLCFHSFGGGTGSGFTSLLMERLSGDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNSCFEPANQMVKCDPRHGKYMACCLLYR 320

HSP 2 Score: 26.5646 bits (57), Expect = 9.985e-152
Identity = 17/40 (42.50%), Postives = 17/40 (42.50%), Query Frame = 1

Query: 1003 DVVPKDVNXXXXXXXXXXXXQFVGRVPNWGSGGGTNTHPP 1122
            DVVPKDVN            QFV   P  G   G N  PP
Sbjct:  322 DVVPKDVNAAIATIKTKRSIQFVDWCPT-GFKVGINYQPP 360

BLAST of DY262489 vs. ExPASy Swiss-Prot
Match: TBA_ENTDO (Tubulin alpha chain OS=Enteroctopus dofleini PE=2 SV=1)

HSP 1 Score: 527.324 bits (1357), Expect = 7.073e-150
Identity = 240/320 (75.00%), Postives = 285/320 (89.06%), Query Frame = 3

Query:   39 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 998
            MRECISIH+GQAG+Q+GNACWELYCLEHGIQP GQM SDK VGG DD+FNTFFSETG+GKHVPRAVF+DLEPTV+DE+RTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKE +DL LDR+RKL+D CTGLQGFL+FH+                  VDYGKKSKL F++YP+PQV+T+VVEPYNS+L+TH+ LEH+D + ++DNEAIYDIC+R+LDIERP+YTNLNRL+SQV+SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAP+ISAEKAYHEQL+V+E+T++ FEP++ M KCDPRHGKYMACC++YR
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPSGQMPSDKAVGGKDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEIRTGLYRQLFHPEQLITGKEDAANNYARGHYTIGKEHIDLVLDRVRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKRNLDIERPSYTNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLAVAEVTSACFEPANQMVKCDPRHGKYMACCMLYR 320

HSP 2 Score: 26.5646 bits (57), Expect = 7.073e-150
Identity = 17/40 (42.50%), Postives = 17/40 (42.50%), Query Frame = 1

Query: 1003 DVVPKDVNXXXXXXXXXXXXQFVGRVPNWGSGGGTNTHPP 1122
            DVVPKDVN            QFV   P  G   G N  PP
Sbjct:  322 DVVPKDVNAAIATIKTKRSIQFVDWCPT-GFKVGINYQPP 360

BLAST of DY262489 vs. ExPASy Swiss-Prot
Match: TBA1_HOMAM (Tubulin alpha-1 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 526.939 bits (1356), Expect = 9.230e-150
Identity = 246/320 (76.88%), Postives = 283/320 (88.44%), Query Frame = 3

Query:   39 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 998
            MRECISIH+GQAG+Q+GNA WELYCLEHGIQPD +M SDKTVG  DD+FNTFFSETGAGKHVPRAVF+DLEP+V+DEVR+G YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVD+ LDRIRKLAD CTGLQGFL+FH+                  VDYGKKSKL F VYP+PQV+T+VVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+LDIERP+YTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKAYHEQLSV+EITN+ FEP++ M KCDPRHGKYMACCL+YR
Sbjct:    1 MRECISIHVGQAGVQMGNAVWELYCLEHGIQPDAKMPSDKTVGVSDDSFNTFFSETGAGKHVPRAVFVDLEPSVVDEVRSGVYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDIVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPSYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYR 320

HSP 2 Score: 26.5646 bits (57), Expect = 9.230e-150
Identity = 17/40 (42.50%), Postives = 17/40 (42.50%), Query Frame = 1

Query: 1003 DVVPKDVNXXXXXXXXXXXXQFVGRVPNWGSGGGTNTHPP 1122
            DVVPKDVN            QFV   P  G   G N  PP
Sbjct:  322 DVVPKDVNAAIANIKTKRTIQFVDWCPT-GFKVGINYQPP 360

BLAST of DY262489 vs. ExPASy Swiss-Prot
Match: TBA_ONCKE (Tubulin alpha chain OS=Oncorhynchus keta PE=2 SV=1)

HSP 1 Score: 526.554 bits (1355), Expect = 1.205e-149
Identity = 243/314 (77.39%), Postives = 280/314 (89.17%), Query Frame = 3

Query:   57 IHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 998
            +H+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKT GGGDD+FNTFFSETGAGKHVPRA+F+DLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+D+ LDR RKLAD CTGLQGFL+FH+                  VDYGKKSKL F VYP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+LDIERP+YTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSV++ITN+ FEP++ M KCDPRHGKYMACCL+YR
Sbjct:    1 MHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTCGGGDDSFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGIYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDIVLDRTRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPSYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVADITNACFEPANQMVKCDPRHGKYMACCLLYR 314

HSP 2 Score: 26.5646 bits (57), Expect = 1.205e-149
Identity = 17/40 (42.50%), Postives = 17/40 (42.50%), Query Frame = 1

Query: 1003 DVVPKDVNXXXXXXXXXXXXQFVGRVPNWGSGGGTNTHPP 1122
            DVVPKDVN            QFV   P  G   G N  PP
Sbjct:  316 DVVPKDVNSAIAAIKTKRSIQFVDWCPT-GFKVGINYQPP 354

The following BLAST results are available for this feature:

BLAST of DY262489 vs. ExPASy Swiss-Prot

BLAST of DY262489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 426


Match Name	E-value	Identity	Description
TBA4A_RAT	3.133e-153	77.81	Tubulin alpha-4A chain OS=Rattus norvegicus GN=Tub...	[more]
TBA4A_MOUSE	3.133e-153	77.81	Tubulin alpha-4A chain OS=Mus musculus GN=Tuba4a P...	[more]
TBA4A_MACFA	3.133e-153	77.81	Tubulin alpha-4A chain OS=Macaca fascicularis GN=T...	[more]
TBA4A_HUMAN	3.133e-153	77.81	Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A P...	[more]
TBA4A_BOVIN	3.133e-153	77.81	Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=...	[more]
TBA2_DROME	2.637e-152	77.50	Tubulin alpha-2 chain OS=Drosophila melanogaster G...	[more]
TBA5_CHICK	9.985e-152	77.19	Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1	[more]
TBA_ENTDO	7.073e-150	75.00	Tubulin alpha chain OS=Enteroctopus dofleini PE=2 ...	[more]
TBA1_HOMAM	9.230e-150	76.88	Tubulin alpha-1 chain OS=Homarus americanus PE=2 S...	[more]
TBA_ONCKE	1.205e-149	77.39	Tubulin alpha chain OS=Oncorhynchus keta PE=2 SV=1	[more]

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Properties


Property Name	Value
Genbank description	IC0AAA100AE03RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DY262489 ID=DY262489; Name=DY262489; organism=Citrus clementina; type=EST; length=1338bp
CAATTCCCGACTCAAATCTCTAACAAAATCACACAAGAATGAGAGAATGC
ATCTCAATTCACATCGGCCAGGCCGGTATCCAGGTTGGTAATGCCTGCTG
GGAGCTCTATTGCCTCGAACATGGCATTCAGCCTGATGGGCAAATGTTAA
GTGACAAAACAGTCGGAGGCGGAGATGATGCTTTCAACACATTCTTCAGT
GAGACCGGCGCCGGAAAGCACGTGCCACGCGCCGTGTTTTTGGACCTTGA
ACCAACTGTAATCGATGAAGTGAGGACTGGCGCCTACCGTCAGTTATTTC
ACCCGGAGCAACTCATTAGCGGCAAAGAAGATGCTGCTAACAACTTTGCC
AGAGGTCACTACACAATTGGGAAAGAGATTGTGGATTTGTGCCTTGATAG
GATCAGGAAGTTAGCTGATAACTGTACCGGTCTACAAGGGTTCCTCGTGT
TCCACGCGGTTGGTGGAGGAACAGGATCCGGGCTCGGGTCTTTGCTCCTT
GAGAGGCTGTCTGTTGATTACGGCAAGAAATCGAAACTGGGATTTACCGT
TTACCCTTCACCTCAAGTTTCAACCTCAGTTGTTGAGCCTTACAACAGCG
TTTTGTCCACTCACTCTCTGTTAGAACACACTGACGTTTCTGTGTTGCTT
GACAATGAAGCAATCTACGATATTTGTCGCCGCTCACTCGATATCGAGAG
ACCCACTTATACCAATCTCAACAGACTTGTTTCTCAGGTGATTTCTTCAC
TAACGGCGTCTCTTCGTTTTGATGGAGCCTTAAACGTGGATGTGACAGAG
TTCCAAACAAATTTAGTCCCATACCCTCGGATTCACTTCATGCTTTCATC
ATATGCCCCTGTTATCTCAGCAGAGAAGGCCTACCACGAGCAACTATCAG
TGTCAGAAATCACAAACAGCGCATTTGAGCCCTCGTCAATGATGGCAAAA
TGTGACCCCCGCCATGGGAAATACATGGCATGTTGTTTGATGTACAGAAG
AAGACGTGGTACCAAAAGATGTGAACGCAGCAGTGGCAGCAATCAAGACT
AAGAAGAAAATCCAATTCGTGGGACGGGTGCCCAACTGGGGTTCAGGTGG
GGGAACAAATACCCACCCCCCATCGGGTGGTTCCTGTGGGGGGGATTTTG
GCTAAGGGTTCAAAAAGTCTGTGGGTTTAAAATTCAAAAACTAAAAAAAG
TTGGGGTGGAAGGGGTTTTCTCAAAAAATTTAATTAAAAAATTTTGAATT
TTGATTTTTTTCCCCAAAAAAAGGGGGGTTTGTTTGGTTCTTTTTTGTAT
TTGGGTGGGGGGAAAGGGGGGCGGGTGGGGGGAGAGAA