DY262499

Overview
NameDY262499
Unique NameDY262499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1240
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262499 vs. ExPASy Swiss-Prot
Match: WIPI4_HUMAN (WD repeat domain phosphoinositide-interacting protein 4 OS=Homo sapiens GN=WDR45 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.026e-14
Identity = 44/112 (39.29%), Postives = 63/112 (56.25%), Query Frame = 1
Query:  574 SVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKS-GGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD------DHQSRCIGEFAFRSDVRSVKLSRERIVVVLEHR 888
            S+ +NQD  CF      G RIYN EP  E    D +  G   +VEML R N+LALVG G + ++    V+IWD      D + + + EF F   V SV++  ++IV+VL++R
Sbjct:   11 SLRFNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSMGLVEMLHRSNLLALVGGGSSPKFSEISVLIWDDAREGKDSKEKLVLEFTFTKPVLSVRMRHDKIVIVLKNR 122          
BLAST of DY262499 vs. ExPASy Swiss-Prot
Match: HSV2_SCHPO (SVP1-like protein 2 OS=Schizosaccharomyces pombe GN=hsv2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.285e-14
Identity = 35/91 (38.46%), Postives = 52/91 (57.14%), Query Frame = 1
Query:  574 SVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSV 846
            +VS NQD  C +     G++I+   P K   +R    GG  IV+MLFR N+L LVG G N +Y P K+I+WDD + R + E     +++ +
Sbjct:    6 TVSLNQDASCMSVALDTGYKIFQINPLKLRAQRQFNDGGLSIVKMLFRSNVLLLVGGGGNPKYAPNKLIVWDDVKERPVKELELNFEIKGI 96          
BLAST of DY262499 vs. ExPASy Swiss-Prot
Match: ATG18_PICPA (Autophagy-related protein 18 OS=Pichia pastoris GN=ATG18 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.587e-14
Identity = 39/115 (33.91%), Postives = 65/115 (56.52%), Query Frame = 1
Query:  538 TGFSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRERIVVVLE 882
            TG + V    +   ++NQD  C + G   G++I+N EPF +     L      IVEMLF  +++A+VG G+     P K+ +++  +   I E  F + + +VK++RER+VV+LE
Sbjct:   12 TGNAQVTHESINFANFNQDSTCVSVGYQSGYKIFNVEPFTKCL--SLADTSIGIVEMLFSSSLVAIVGLGELPDSSPRKLKVFNTKRRSIICELTFPTSILAVKMNRERMVVLLE 124          

HSP 2 Score: 27.335 bits (59), Expect = 2.587e-14
Identity = 12/32 (37.50%), Postives = 20/32 (62.50%), Query Frame = 3
Query:  888 IYVYSFVNLKLLHQIETLANLKGALLSFS*SE 983
            IY+Y    +++LH IET +N +G +   S +E
Sbjct:  127 IYIYDINTMRILHTIETPSNPEGLIALSSSTE 158          
BLAST of DY262499 vs. ExPASy Swiss-Prot
Match: WIPI4_RAT (WD repeat domain phosphoinositide-interacting protein 4 OS=Rattus norvegicus GN=Wdr45 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.898e-14
Identity = 43/112 (38.39%), Postives = 62/112 (55.36%), Query Frame = 1
Query:  574 SVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKS-GGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD------DHQSRCIGEFAFRSDVRSVKLSRERIVVVLEHR 888
            S+ +NQD  CF      G RIYN EP  E    D +  G   +VEML R N+LALVG G + ++    V+IWD      D + + + EF F   V +V++  ++IV+VL +R
Sbjct:   11 SLHFNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSVGLVEMLHRSNLLALVGGGSSPKFSEISVLIWDDAREGKDSKDKLVLEFTFTKPVLAVRMRHDKIVIVLRNR 122          
BLAST of DY262499 vs. ExPASy Swiss-Prot
Match: WIPI4_MOUSE (WD repeat domain phosphoinositide-interacting protein 4 OS=Mus musculus GN=Wdr45 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.898e-14
Identity = 43/112 (38.39%), Postives = 62/112 (55.36%), Query Frame = 1
Query:  574 SVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKS-GGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD------DHQSRCIGEFAFRSDVRSVKLSRERIVVVLEHR 888
            S+ +NQD  CF      G RIYN EP  E    D +  G   +VEML R N+LALVG G + ++    V+IWD      D + + + EF F   V +V++  ++IV+VL +R
Sbjct:   11 SLHFNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSVGLVEMLHRSNLLALVGGGSSPKFSEISVLIWDDAREGKDSKDKLVLEFTFTKPVLAVRMRHDKIVIVLRNR 122          
BLAST of DY262499 vs. ExPASy Swiss-Prot
Match: HSV2_YEAST (SVP1-like protein 2 OS=Saccharomyces cerevisiae GN=HSV2 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.091e-14
Identity = 45/115 (39.13%), Postives = 62/115 (53.91%), Query Frame = 1
Query:  565 ELISVSWNQDYGCFAAGTSCGFRIYNCEP--------FKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRERIVVVLEH 885
            + +SVS+NQD  CF+     GFRI+N +P        FKE+     +  G     ML+R N +ALVG G   ++   K+IIWDD   +      F S ++ V LSR  IVVVLE+
Sbjct:   18 KFLSVSFNQDDSCFSVALENGFRIFNTDPLTSKLSKTFKESATNQSRGTGIGYTRMLYRTNYIALVGGGKRPRHALNKLIIWDDLLQKETITLKFMSSIKDVFLSRIHIVVVLEN 132          
BLAST of DY262499 vs. ExPASy Swiss-Prot
Match: HSV2_PICAN (SVP1-like protein 2 OS=Pichia angusta GN=HSV2 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.935e-13
Identity = 41/113 (36.28%), Postives = 66/113 (58.41%), Query Frame = 1
Query:  559 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKS-GGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRERIVVVLEHRYM 894
            E  +++ ++NQD  CFA     GF++YN +P +   +R   + GG  ++ ML R N +ALVG G   ++P  K+ IWDD + +      F S + +V LSR  IVVVL+++ +
Sbjct:   14 EPAVLNAAFNQDQTCFAVCHESGFQVYNTDPMELRMKRTFSTNGGVGLIAMLHRTNYVALVGGGRQPRFPVNKLCIWDDLKKKPSIMLEFMSPILNVLLSRILIVVVLKNKVL 126          
BLAST of DY262499 vs. ExPASy Swiss-Prot
Match: ATG18_VANPO (Autophagy-related protein 18 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=ATG18 PE=3 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 2.722e-13
Identity = 35/101 (34.65%), Postives = 57/101 (56.44%), Query Frame = 1
Query:  577 VSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRERIVVVL 879
            +++NQ   C +  T  GF IYNC+PF + + +      + IVEMLF  ++LA+VG GD       ++ + +      I E  F S + SVK+++ R+VV+L
Sbjct:   12 INFNQTGSCISIATDDGFSIYNCDPFGKFYSQK----NYSIVEMLFSTSLLAVVGLGDQPALSQRRLTMINTKTYSIICEVTFPSAILSVKMNKSRLVVLL 108          

HSP 2 Score: 30.0314 bits (66), Expect = 2.722e-13
Identity = 12/25 (48.00%), Postives = 17/25 (68.00%), Query Frame = 3
Query:  888 IYVYSFVNLKLLHQIETLANLKGAL 962
            IY+Y   N++LLH IET +N  G +
Sbjct:  112 IYIYDINNMRLLHTIETTSNKLGII 136          
BLAST of DY262499 vs. ExPASy Swiss-Prot
Match: HSV2_CANGA (SVP1-like protein 2 OS=Candida glabrata GN=HSV2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.300e-13
Identity = 43/114 (37.72%), Postives = 58/114 (50.88%), Query Frame = 1
Query:  559 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKS-----GGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRERIVVVLEH 885
            E    SV++NQD  CF+     GF +YN  P      ++ K       G    +ML+R N +ALVG G   +Y   +V+IWDD Q +      F S VR V LSR  +VV LE+
Sbjct:   14 ETGFASVTFNQDESCFSCANEQGFLVYNTFPLSLKLTKEFKQTPERGAGIGYSQMLYRTNYIALVGGGQRPRYSLNRVVIWDDLQQKESFSLKFMSIVRKVVLSRVHLVVALEN 127          
BLAST of DY262499 vs. ExPASy Swiss-Prot
Match: HSV2_ASHGO (SVP1-like protein 2 OS=Ashbya gossypii GN=HSV2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.310e-13
Identity = 41/106 (38.68%), Postives = 58/106 (54.72%), Query Frame = 1
Query:  571 ISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIV---EMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRERIVVVL 879
            + V++NQD  CF+  T  GF IYN +P + + +R     G   +    ML+R N + LVG G + ++   K+ IWDD Q R      F S V  + LSR+ IVVVL
Sbjct:   19 LHVNFNQDQECFSCATEKGFEIYNTDPIQCSVKRRFSHNGMSGIGYTRMLYRTNYIGLVGGGASPRFSTNKIAIWDDIQQRDSVSIRFNSPVHELFLSRQYIVVVL 124          
The following BLAST results are available for this feature:
BLAST of DY262499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
WIPI4_HUMAN1.026e-1439.29WD repeat domain phosphoinositide-interacting prot... [more]
HSV2_SCHPO2.285e-1438.46SVP1-like protein 2 OS=Schizosaccharomyces pombe G... [more]
ATG18_PICPA2.587e-1433.91Autophagy-related protein 18 OS=Pichia pastoris GN... [more]
WIPI4_RAT3.898e-1438.39WD repeat domain phosphoinositide-interacting prot... [more]
WIPI4_MOUSE3.898e-1438.39WD repeat domain phosphoinositide-interacting prot... [more]
HSV2_YEAST5.091e-1439.13SVP1-like protein 2 OS=Saccharomyces cerevisiae GN... [more]
HSV2_PICAN1.935e-1336.28SVP1-like protein 2 OS=Pichia angusta GN=HSV2 PE=3... [more]
ATG18_VANPO2.722e-1334.65Autophagy-related protein 18 OS=Vanderwaltozyma po... [more]
HSV2_CANGA3.300e-1337.72SVP1-like protein 2 OS=Candida glabrata GN=HSV2 PE... [more]
HSV2_ASHGO4.310e-1338.68SVP1-like protein 2 OS=Ashbya gossypii GN=HSV2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AF01RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262499 ID=DY262499; Name=DY262499; organism=Citrus clementina; type=EST; length=1240bp
CTCTCACAAAGCGAAAGAGAAAATTTGATCTGATGATCATTAATTTGATT
TCTCATATCACAGCATCAAGGTTAGTGTCTCTATTCGATTTCTGCTTTCT
GTACTCTTCGATTAAATCACTTTATTTGTTTGGAATTATATAATATAGTA
AGGAATCAGGAGGCCCGACTGATATTTTCACGATCGCAAATTTCCCGTTT
CTGATCATTGATCACTGGCTGCTGCCTGCTGGTGATTAGATGCATTAACT
CTACATGCTATGAGAGATACAGAAGTTTGCAGAATCTGTGGGAATTAGCG
TATTTGTATGACATTTCATAATATTGTGTGAATACAGGGGGTGCCACTGA
AATTATTCACAATCGAGAAGATTTTCATATTTGATTGCTGCTGCTGCTGC
TGCTGCTGCTGACCCTTTCTTCGTCCCACATGACTTCAACTGTTTCGACA
TCTCGAGAAATTCTTCCACCGGGCCCCTTTGGATCCCCCAATGCTGGGGC
TTCGGCTTCGGCTTTGGCTTCATTTGGCCACCCGCAAACGGGGTTCAGTG
ATGTTGACGAAATTGAGTTGATCTCTGTGTCTTGGAACCAGGACTATGGT
TGTTTTGCCGCTGGAACTAGTTGTGGGTTTCGAATTTATAATTGTGAGCC
GTTTAAGGAAACTTTTAGACGTGATTTGAAAAGTGGTGGGTTTAGGATTG
TTGAGATGTTGTTTCGTTGTAATATATTGGCACTCGTTGGTGCTGGGGAT
AATTCTCAGTATCCTCCTACTAAAGTTATTATTTGGGATGATCATCAGAG
CAGGTGCATTGGTGAGTTTGCGTTTAGGTCTGATGTTCGCTCTGTGAAAT
TGAGTAGGGAACGAATTGTGGTTGTTCTTGAGCATAGATATATGTTTATA
GTTTTGTTAATCTCAAGTTGCTTCATCAGATTGAGACTCTCGCGAATCTG
AAGGGGGCTTTGTTGTCTTTCTCATAATCCGAGTACCTCCGTGTTGGCTT
GCCCGGGTCCTCAACGGGGAACGGTTTCCATTTGACAATTTGGGGCTCAA
TATGAAAAAGCTAAAAAATGGCCCAGGATTTTCCAATGGGGTGCCTTTAC
CCTCAAATTGGAAGGGGCGGCTTTTTTGCCACCTGGCAAAAACCCAGGGG
GCCATTTTGTAAAAAAAAATTTTTAAACACCGGGGGGGAGGGGGACTCCC
CTTTGGCCAGAAAAGGTTCCAAAAAAAAGGGTGTGTAACA
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