DY262499

Overview
NameDY262499
Unique NameDY262499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1240
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262499 vs. ExPASy Swiss-Prot
Match: ATG18_COCIM (Autophagy-related protein 18 OS=Coccidioides immitis GN=ATG18 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.861e-12
Identity = 36/102 (35.29%), Postives = 62/102 (60.78%), Query Frame = 1
Query:  577 VSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRERIVVVLE 882
            V++NQDY   A GTS GFRI+  +PF +++  + K G   I+EMLF  +++A++         P ++ I +  +   I E  F + V +++L+R+R+V+VLE
Sbjct:    6 VTFNQDYSYLAVGTSKGFRIFTTDPFGKSY--ETKEGNIAILEMLFSTSLVAVI-------LSPRRLQIMNTKRQSVICELTFPTTVLAIRLNRKRLVIVLE 98          

HSP 2 Score: 24.6386 bits (52), Expect = 4.861e-12
Identity = 16/41 (39.02%), Postives = 21/41 (51.22%), Query Frame = 3
Query:  888 IYVYSFVNLKLLHQIETLANLKG--ALLSFS*SEYLRVGLP 1004
            IY+Y    +KL++ IET  N     AL   S + YL   LP
Sbjct:  101 IYIYDIQTMKLVYTIETSPNPNAICALAPSSDNCYLAYPLP 141          
BLAST of DY262499 vs. ExPASy Swiss-Prot
Match: ATG18_DICDI (Autophagy-related protein 18 OS=Dictyostelium discoideum GN=atg18 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.333e-12
Identity = 35/105 (33.33%), Postives = 68/105 (64.76%), Query Frame = 1
Query:  568 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRERIVVVLE 882
            ++ +++NQD+ C A GT  G++I+N +P+  T      +GG  +VEMLF  +++++VG+GD +     +++I +   +  I +  F + + SVK++R+RIVV++E
Sbjct:   11 ILFLNFNQDFSCIAVGTPEGYKIFNSDPY--TLYYSQSNGGAGLVEMLFSTSLVSIVGSGDGNT-SQRRLLINNIKNNIPICDLNFVTAILSVKMNRKRIVVIME 112          

HSP 2 Score: 23.483 bits (49), Expect = 6.333e-12
Identity = 14/35 (40.00%), Postives = 20/35 (57.14%), Query Frame = 3
Query:  888 IYVYSFVNLKLLHQIETLANLKG-ALLSFS*SEYL 989
            I++Y   N+KLL   E  +N KG   LS S + Y+
Sbjct:  115 IHIYDINNMKLLETREIASNPKGLCALSPSNTNYI 149          
BLAST of DY262499 vs. ExPASy Swiss-Prot
Match: ATG18_PICGU (Autophagy-related protein 18 OS=Pichia guilliermondii GN=ATG18 PE=3 SV=2)

HSP 1 Score: 59.6918 bits (143), Expect = 2.994e-11
Identity = 33/105 (31.43%), Postives = 58/105 (55.24%), Query Frame = 1
Query:  577 VSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSG-GFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRERIVVVLEHR 888
            +++NQD  C A G + G+ I+   PF + +  D   G    IVEML+  +++ +V  G+ +   P K+ I +  +   I +  F S +  VKL+R R++V+LE +
Sbjct:   27 ITFNQDGSCIAVGNNKGYSIFTTNPFTKCY--DSPPGEAIGIVEMLYSTSLVVVVALGEETGSSPRKLKIINTKRGSTICDLVFPSTILKVKLTRSRMIVLLEEQ 129          

HSP 2 Score: 28.8758 bits (63), Expect = 2.994e-11
Identity = 12/23 (52.17%), Postives = 15/23 (65.22%), Query Frame = 3
Query:  888 IYVYSFVNLKLLHQIETLANLKG 956
            IY+Y    +KLLH IET  N+ G
Sbjct:  130 IYLYDISTMKLLHTIETSPNMAG 152          
BLAST of DY262499 vs. ExPASy Swiss-Prot
Match: ATG18_PENCW (Autophagy-related protein 18 OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=atg18 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 3.920e-11
Identity = 37/102 (36.27%), Postives = 61/102 (59.80%), Query Frame = 1
Query:  577 VSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRERIVVVLE 882
            V++NQDY   A  TS GF+I+  EPF +++  + K G   ++EMLF  +++AL+         P ++ I +  +   I E  F + V +VKL+R+R+V+VLE
Sbjct:    6 VTFNQDYSYLAVATSKGFQIFTTEPFAKSY--EAKEGNIAVIEMLFSTSLVALI-------LSPRRLQIQNTKRQCTICELTFPTTVLAVKLNRKRLVIVLE 98          

HSP 2 Score: 21.9422 bits (45), Expect = 3.920e-11
Identity = 15/41 (36.59%), Postives = 20/41 (48.78%), Query Frame = 3
Query:  888 IYVYSFVNLKLLHQIETLANLKG--ALLSFS*SEYLRVGLP 1004
            IY+Y    +KLL  I+T  N     AL   S + Y+   LP
Sbjct:  101 IYLYDIQTMKLLSTIDTSPNPNAICALAPSSENCYMAYPLP 141          
BLAST of DY262499 vs. ExPASy Swiss-Prot
Match: ATG18_CHAGB (Autophagy-related protein 18 OS=Chaetomium globosum GN=ATG18 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.034e-11
Identity = 39/112 (34.82%), Postives = 65/112 (58.04%), Query Frame = 1
Query:  547 SDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRERIVVVLE 882
            +D+   +L  V++NQD+ C A  TS GFRIY+ +PF + F  D   G   I+EMLF  +++A+V +       P  ++I +  +   I +  F + V +V+L+R+ + VVLE
Sbjct:    2 ADLSNTKLNYVTFNQDHSCLAVATSRGFRIYHTDPFSKIFNSD--EGNVTIIEMLFSTSLVAMVRS-------PRHLVIQNTKRGSIICDLTFPTAVLAVRLNRKTLAVVLE 104          
BLAST of DY262499 vs. ExPASy Swiss-Prot
Match: ATG18_BOTFB (Autophagy-related protein 18 OS=Botryotinia fuckeliana (strain B05.10) GN=atg18 PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 4.034e-11
Identity = 39/102 (38.24%), Postives = 60/102 (58.82%), Query Frame = 1
Query:  577 VSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRERIVVVLE 882
            V++NQDY C A GT+ GFRIY+ EPF + F  D  +    I+EMLF  +++A+       +  P  ++I +  +   I E  F S V +V+L+R+R  V+LE
Sbjct:    4 VTFNQDYSCLAVGTAKGFRIYHTEPFSKIFTGD--NENVTIIEMLFSTSLVAI-------KQSPRHIVIQNTKRGTVICELTFPSAVLAVRLNRKRFAVLLE 96          
BLAST of DY262499 vs. ExPASy Swiss-Prot
Match: ATG18_ASPFU (Autophagy-related protein 18 OS=Aspergillus fumigatus GN=atg18 PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 8.565e-11
Identity = 38/109 (34.86%), Postives = 62/109 (56.88%), Query Frame = 1
Query:  577 VSWNQDYGCFAAG-------TSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRERIVVVLE 882
            V++NQDY   A G       TS GFRI+  +PF +++  + K G   I+EMLF  +++AL+         P ++ I +  +   I E  F + V +V+L+R+R+V+VLE
Sbjct:    6 VTFNQDYSYLAVGSVSPPSATSKGFRIFTTDPFAKSY--ETKEGNIAIIEMLFSTSLVALI-------LSPRRLQITNTKRQSTICELTFPTTVLAVRLNRKRLVIVLE 105          

HSP 2 Score: 25.0238 bits (53), Expect = 8.565e-11
Identity = 17/50 (34.00%), Postives = 25/50 (50.00%), Query Frame = 3
Query:  888 IYVYSFVNLKLLHQIETLANLKG--ALLSFS*SEYLRVGLPGSSTGNGFH 1031
            IY+Y    +KLL+ I+T  N     AL   S + YL   LP  +  + F+
Sbjct:  108 IYLYDIQTMKLLYTIQTSPNPNAICALSPSSDNCYLAYPLPQKAPPSSFN 157          
The following BLAST results are available for this feature:
BLAST of DY262499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
ATG18_COCIM4.861e-1235.29Autophagy-related protein 18 OS=Coccidioides immit... [more]
ATG18_DICDI6.333e-1233.33Autophagy-related protein 18 OS=Dictyostelium disc... [more]
ATG18_PICGU2.994e-1131.43Autophagy-related protein 18 OS=Pichia guilliermon... [more]
ATG18_PENCW3.920e-1136.27Autophagy-related protein 18 OS=Penicillium chryso... [more]
ATG18_CHAGB4.034e-1134.82Autophagy-related protein 18 OS=Chaetomium globosu... [more]
ATG18_BOTFB4.034e-1138.24Autophagy-related protein 18 OS=Botryotinia fuckel... [more]
ATG18_ASPFU8.565e-1134.86Autophagy-related protein 18 OS=Aspergillus fumiga... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AF01RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262499 ID=DY262499; Name=DY262499; organism=Citrus clementina; type=EST; length=1240bp
CTCTCACAAAGCGAAAGAGAAAATTTGATCTGATGATCATTAATTTGATT
TCTCATATCACAGCATCAAGGTTAGTGTCTCTATTCGATTTCTGCTTTCT
GTACTCTTCGATTAAATCACTTTATTTGTTTGGAATTATATAATATAGTA
AGGAATCAGGAGGCCCGACTGATATTTTCACGATCGCAAATTTCCCGTTT
CTGATCATTGATCACTGGCTGCTGCCTGCTGGTGATTAGATGCATTAACT
CTACATGCTATGAGAGATACAGAAGTTTGCAGAATCTGTGGGAATTAGCG
TATTTGTATGACATTTCATAATATTGTGTGAATACAGGGGGTGCCACTGA
AATTATTCACAATCGAGAAGATTTTCATATTTGATTGCTGCTGCTGCTGC
TGCTGCTGCTGACCCTTTCTTCGTCCCACATGACTTCAACTGTTTCGACA
TCTCGAGAAATTCTTCCACCGGGCCCCTTTGGATCCCCCAATGCTGGGGC
TTCGGCTTCGGCTTTGGCTTCATTTGGCCACCCGCAAACGGGGTTCAGTG
ATGTTGACGAAATTGAGTTGATCTCTGTGTCTTGGAACCAGGACTATGGT
TGTTTTGCCGCTGGAACTAGTTGTGGGTTTCGAATTTATAATTGTGAGCC
GTTTAAGGAAACTTTTAGACGTGATTTGAAAAGTGGTGGGTTTAGGATTG
TTGAGATGTTGTTTCGTTGTAATATATTGGCACTCGTTGGTGCTGGGGAT
AATTCTCAGTATCCTCCTACTAAAGTTATTATTTGGGATGATCATCAGAG
CAGGTGCATTGGTGAGTTTGCGTTTAGGTCTGATGTTCGCTCTGTGAAAT
TGAGTAGGGAACGAATTGTGGTTGTTCTTGAGCATAGATATATGTTTATA
GTTTTGTTAATCTCAAGTTGCTTCATCAGATTGAGACTCTCGCGAATCTG
AAGGGGGCTTTGTTGTCTTTCTCATAATCCGAGTACCTCCGTGTTGGCTT
GCCCGGGTCCTCAACGGGGAACGGTTTCCATTTGACAATTTGGGGCTCAA
TATGAAAAAGCTAAAAAATGGCCCAGGATTTTCCAATGGGGTGCCTTTAC
CCTCAAATTGGAAGGGGCGGCTTTTTTGCCACCTGGCAAAAACCCAGGGG
GCCATTTTGTAAAAAAAAATTTTTAAACACCGGGGGGGAGGGGGACTCCC
CTTTGGCCAGAAAAGGTTCCAAAAAAAAGGGTGTGTAACA
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