DY262548

Overview
NameDY262548
Unique NameDY262548
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1345
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262548 vs. ExPASy Swiss-Prot
Match: SBP_CRYJA (Sugi basic protein OS=Cryptomeria japonica PE=1 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 2.884e-50
Identity = 105/227 (46.26%), Postives = 136/227 (59.91%), Query Frame = 3
Query:  333 CQTGNPIDDCWHCDPNWAANRQRLADCSIGFAQGTLGGKGGQIYVITDSSDKDPANPTPGTLRHAVIQTEPLWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNG--CLTLQYXXXXXXXXXXXXXCKPS--GNTMIASS----PTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNN*FSHHNEVMLLGHHEQYALDMGDAVTL 989
            C + NPID CW  D NWA NR +LADC++GF   T+GGKGG +Y +T+S D DP NP PGTLR+   +  PLWI F+ NM IKLK  + I  YKT DGRGA V I GNG  C+ ++              C  S  GN +I  S    P H       DGD +++  +  IW+DH S S  +DGL+D  + STG+TISNN F +H++VMLLGH + Y+ D    VT+
Sbjct:   19 CFSDNPIDSCWRGDSNWAQNRMKLADCAVGFGSSTMGGKGGDLYTVTNSDD-DPVNPAPGTLRYGATRDRPLWIIFSGNMNIKLKMPMYIAGYKTFDGRGAQVYI-GNGGPCVFIKRVSNVIIHGLHLYGCSTSVLGNVLINESFGVEPVH-----PQDGDALTLRTATNIWIDHNSFSNSSDGLVDVTLSSTGVTISNNLFFNHHKVMLLGHDDAYSDDKSMKVTV 238          
BLAST of DY262548 vs. ExPASy Swiss-Prot
Match: MPA12_AMBAR (Pollen allergen Amb a 1.2 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 3.767e-50
Identity = 108/246 (43.90%), Postives = 140/246 (56.91%), Query Frame = 3
Query:  252 PDAVAQDVQRRVNVSLSRRQALAINAQCQTGNPIDDCWHCDPNWAANRQRLADCSIGFAQGTLGGKGGQIYVITDSSDKDPANPTPGTLRHAVIQTEPLWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYXXXXXXXXXXXXXCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNN*FSHHNEVMLLGHHEQYALDMGDAVTL 989
            P   A+DV+  +  +   R++L     C+  N ID CW C  +WA NRQ LADC+ GFA+GT GGK G +Y +T   D D ANP  GTLR A  Q  PLWI F  NM+I L  EL++NS KTIDGRG  V I   G LTL                K     MI S+      R +SDGD I++ GS +IW+DHCSLS  +DGL+D  +GS+ +T+SN  F+ H  V+LLG  + +  D G   T+
Sbjct:   22 PVRSAEDVEEFLPSANETRRSLKA---CEAHNIIDKCWRCKADWANNRQALADCAQGFAKGTYGGKHGDVYTVTSDKDDDVANPKEGTLRFAAAQNRPLWIIFKRNMVIHLNQELVVNSDKTIDGRGVKVNIVNAG-LTLMNVKNIIIHNINIHDIKVCPGGMIKSNDGPPILRQQSDGDAINVAGSSQIWIDHCSLSKASDGLLDITLGSSHVTVSNCKFTQHQFVLLLGADDTHYQDKGMLATV 263          
BLAST of DY262548 vs. ExPASy Swiss-Prot
Match: MPAC1_CUPAR (Major pollen allergen Cup a 1 OS=Cupressus arizonica PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.870e-49
Identity = 106/223 (47.53%), Postives = 135/223 (60.54%), Query Frame = 3
Query:  345 NPIDDCWHCDPNWAANRQRLADCSIGFAQGTLGGKGGQIYVITDSSDKDPANPTPGTLRHAVIQTEPLWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNG--CLTLQYXXXXXXXXXXXXXCKPS--GNTMIASS----PTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNN*FSHHNEVMLLGHHEQYALDMGDAVTL 989
            NPID CW  D NW  NR +LADC +GF   T+GGKGG+IY +T S D +P NPTPGTLR+   + + LWI F+ NM IKL+  L +  YKTIDGRGA V + GNG  CL ++              C  S  G+ +++ S    P H       DGD I++      W+DH SLS C+DGLID  +GSTGITISNN F +H++VMLLGH + Y  D    VT+
Sbjct:    2 NPIDSCWRGDSNWDQNRMKLADCVVGFGSSTMGGKGGEIYTVTSSED-NPVNPTPGTLRYGATREKALWIIFSQNMNIKLQMPLYVAGYKTIDGRGAVVHL-GNGGPCLFMRKASHVILHGLHIHGCNTSVLGDVLVSESIGVEPVHA-----QDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTV 217          
BLAST of DY262548 vs. ExPASy Swiss-Prot
Match: MPAC1_CHAOB (Major pollen allergen Cha o 1 OS=Chamaecyparis obtusa PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 2.985e-47
Identity = 102/223 (45.74%), Postives = 132/223 (59.19%), Query Frame = 3
Query:  333 CQTGNPIDDCWHCDPNWAANRQRLADCSIGFAQGTLGGKGGQIYVITDSSDKDPANPTPGTLRHAVIQTEPLWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNG--CLTLQYXXXXXXXXXXXXXCKPS--GNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNN*FSHHNEVMLLGHHEQYALDMGDAVTL 989
            C + NPID CW  D NW  NR +LADC++GF    +GGKGG  Y +T SSD DP NP PGTLR+   +   LWI F+ N+ IKL   L I   KTIDGRGA V I GNG  CL ++              C  S  GN +I+ +   V    + DGD I++     +W+DH SLS  +DGL+D  + STG+TISNN F +H++VMLLGH + Y+ D    VT+
Sbjct:   19 CFSDNPIDSCWRGDANWDQNRMKLADCAVGFGSSAMGGKGGAFYTVT-SSDDDPVNPAPGTLRYGATRERSLWIIFSKNLNIKLNMPLYIAGNKTIDGRGAEVHI-GNGGPCLFMRTVSHVILHGLNIHGCNTSVSGNVLISEASGVVPVHAQ-DGDAITMRNVTDVWIDHNSLSDSSDGLVDVTLASTGVTISNNHFFNHHKVMLLGHSDIYSDDKSMKVTV 238          
BLAST of DY262548 vs. ExPASy Swiss-Prot
Match: MPA13_AMBAR (Pollen allergen Amb a 1.3 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 3.898e-47
Identity = 101/219 (46.12%), Postives = 128/219 (58.45%), Query Frame = 3
Query:  333 CQTGNPIDDCWHCDPNWAANRQRLADCSIGFAQGTLGGKGGQIYVITDSSDKDPANPTPGTLRHAVIQTEPLWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYXXXXXXXXXXXXXCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNN*FSHHNEVMLLGHHEQYALDMGDAVTL 989
            C+  N ID CW    +W  NRQ LADC+ GFA+GT GGK G +Y +T + D D ANP  GTLR A  Q  PLWI F ++M+I L  EL++NS KTIDGRG  VEI  NG LTL                K     MI S+      R  SDGD I++ GS +IW+DHCSLS   DGL+D  +GST +TISN  F+  ++ +LLG  + +  D G   T+
Sbjct:   45 CEALNIIDKCWRGKADWENNRQALADCAQGFAKGTYGGKWGDVYTVTSNLDDDVANPKEGTLRFAAAQNRPLWIIFKNDMVINLNQELVVNSDKTIDGRGVKVEII-NGGLTLMNVKNIIIHNINIHDVKVLPGGMIKSNDGPPILRQASDGDTINVAGSSQIWIDHCSLSKSFDGLVDVTLGSTHVTISNCKFTQQSKAILLGADDTHVQDKGMLATV 262          
BLAST of DY262548 vs. ExPASy Swiss-Prot
Match: MPA11_AMBAR (Pollen allergen Amb a 1.1 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 5.091e-47
Identity = 105/246 (42.68%), Postives = 139/246 (56.50%), Query Frame = 3
Query:  252 PDAVAQDVQRRVNVSLSRRQALAINAQCQTGNPIDDCWHCDPNWAANRQRLADCSIGFAQGTLGGKGGQIYVITDSSDKDPANPTPGTLRHAVIQTEPLWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYXXXXXXXXXXXXXCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNN*FSHHNEVMLLGHHEQYALDMGDAVTL 989
            P   A+D+Q  + V+ +RR   +        N ID CW    +WA NR+ LADC+ GF +GT+GGK G IY +T   D D ANP  GTLR    Q  PLWI F  +M+I+L  E+++NS KTIDGRGA VEI   G  TL                K +   +I S+      R  SDGD ISI GS +IW+DHCSLS   DGL+DA +G+T +T+SN+ F+ H  V+L G  ++   D G   T+
Sbjct:   22 PVRSAEDLQEILPVNETRRLTTS-----GAYNIIDGCWRGKADWAENRKALADCAQGFGKGTVGGKDGDIYTVTSELDDDVANPKEGTLRFGAAQNRPLWIIFERDMVIRLDKEMVVNSDKTIDGRGAKVEIINAG-FTLNGVKNVIIHNINMHDVKVNPGGLIKSNDGPAAPRAGSDGDAISISGSSQIWIDHCSLSKSVDGLVDAKLGTTRLTVSNSLFTQHQFVLLFGAGDENIEDRGMLATV 261          
BLAST of DY262548 vs. ExPASy Swiss-Prot
Match: MPAA2_AMBAR (Pollen allergen Amb a 2 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 5.629e-46
Identity = 96/219 (43.84%), Postives = 125/219 (57.08%), Query Frame = 3
Query:  333 CQTGNPIDDCWHCDPNWAANRQRLADCSIGFAQGTLGGKGGQIYVITDSSDKDPANPTPGTLRHAVIQTEPLWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYXXXXXXXXXXXXXCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNN*FSHHNEVMLLGHHEQYALDMGDAVTL 989
            C+  N ID CW C P+WA NRQ L +C+ GF + T GGK G IY++T   D D  NP  GTLR    Q  PLWI F  +M+I L+ E+++ S KTIDGRGA VE+   G +TL                +      I S+      R +SDGD I + GS  IW+DHC+LS   DGL+D   GSTG+TISN  F+HH + +LLG  + +  D+   VTL
Sbjct:   45 CEAHNIIDKCWRCKPDWAENRQALGNCAQGFGKATHGGKWGDIYMVTSDQDDDVVNPKEGTLRFGATQDRPLWIIFQRDMIIYLQQEMVVTSDKTIDGRGAKVELVYGG-ITLMNVKNVIIHNIDIHDVRVLPGGRIKSNGGPAIPRHQSDGDAIHVTGSSDIWIDHCTLSKSFDGLVDVNWGSTGVTISNCKFTHHEKAVLLGASDTHFQDLKMHVTL 262          
BLAST of DY262548 vs. ExPASy Swiss-Prot
Match: MPA14_AMBAR (Pollen allergen Amb a 1.4 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 3.415e-43
Identity = 95/202 (47.03%), Postives = 114/202 (56.44%), Query Frame = 3
Query:  333 CQTGNPIDDCWHCDPNWAANRQRLADCSIGFAQGTLGGKGGQIYVITDSSDKDPANPTPGTLRHAVIQTEPLWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYXXXXXXXXXXXXXCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNN*FSHHNEVML 938
            C T N ID CW    +WA NR+ LADC+ GFA+GT+GGK G IY +T   D D ANP  GTLR    Q  PLWI FA +M+I+L  EL IN+ KTIDGRGA VEI   G                       G  + +     V  +G SDGD I I G  +IW+DHCSLS   DGLIDA  GST  T+SN  F+ H  ++L
Sbjct:   45 CGTYNIIDGCWRGKADWAENRKALADCAQGFAKGTIGGKDGDIYTVTSELDDDVANPKEGTLRFGAAQNRPLWIIFARDMVIRLDRELAINNDKTIDGRGAKVEIINAGFAIYNVKNIIIHNIIMHDIVVNPGGLIKSHDGPPVPRKG-SDGDAIGISGGSQIWIDHCSLSKAVDGLIDAKHGSTHFTVSNCLFTQHQYLLL 245          
The following BLAST results are available for this feature:
BLAST of DY262548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
SBP_CRYJA2.884e-5046.26Sugi basic protein OS=Cryptomeria japonica PE=1 SV... [more]
MPA12_AMBAR3.767e-5043.90Pollen allergen Amb a 1.2 OS=Ambrosia artemisiifol... [more]
MPAC1_CUPAR1.870e-4947.53Major pollen allergen Cup a 1 OS=Cupressus arizoni... [more]
MPAC1_CHAOB2.985e-4745.74Major pollen allergen Cha o 1 OS=Chamaecyparis obt... [more]
MPA13_AMBAR3.898e-4746.12Pollen allergen Amb a 1.3 OS=Ambrosia artemisiifol... [more]
MPA11_AMBAR5.091e-4742.68Pollen allergen Amb a 1.1 OS=Ambrosia artemisiifol... [more]
MPAA2_AMBAR5.629e-4643.84Pollen allergen Amb a 2 OS=Ambrosia artemisiifolia... [more]
MPA14_AMBAR3.415e-4347.03Pollen allergen Amb a 1.4 OS=Ambrosia artemisiifol... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA100BB07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262548 ID=DY262548; Name=DY262548; organism=Citrus clementina; type=EST; length=1345bp
CTGTTCATTCAAGAGCAGGAAAGACATCTCCATTCTGCAATTTGCACCAG
CAGGCAGAAGCAAAAGCAAAAGCAAAAGCAAAGCAAAGCAAGGCAGCAGA
CAAACAAATACCCACCACCGTTATCATTCTTGTACCTTCAACAATGCTTC
TAAACACCTGCATTCTCTTAGAATGCCTCTTCTTCCTCATTTTCTCCTCT
TCTGCTACAATTTCTGCTCTCAATCTCACTTTACCCCATCAGCATCCTGA
CCCTGACGCTGTTGCTCAAGATGTGCAAAGGAGAGTTAATGTATCTCTAT
CAAGAAGACAAGCGCTCGCCATTAACGCCCAATGCCAAACCGGAAACCCC
ATCGATGACTGCTGGCACTGCGACCCAAACTGGGCAGCAAACCGGCAACG
GTTAGCCGACTGCAGCATCGGCTTCGCCCAAGGCACCCTCGGCGGCAAAG
GCGGCCAGATCTACGTCATCACCGACTCCTCCGACAAGGACCCGGCGAAC
CCCACGCCGGGCACCCTCCGCCACGCCGTCATCCAAACGGAACCCCTCTG
GATCACCTTCGCCTCCAACATGCTCATCAAGCTCAAACACGAGCTCATCA
TCAACAGCTACAAAACCATCGACGGCCGCGGCGCCAACGTCGAAATCACC
GGCAACGGCTGCCTCACGCTCCAGTACGTGTCCCACGTCATCATCCACAA
CGTCCACATCCACCACTGCAAGCCCTCGGGGAACACGATGATCGCCTCGT
CGCCGACCCACGTCGGGTACCGGGGCAAGTCGGACGGTGACGGGATCTCC
ATATTCGGCTCGCAGAAGATATGGGTGGATCACTGCTCGCTGAGCTACTG
CACCGACGGGCTGATCGACGCGATAATGGGGTCCACGGGGATAACGATCT
CCAACAATTAATTCTCGCACCACAATGAGGTGATGCTGCTGGGGCACCAC
GAACAGTACGCGCTCGATATGGGGGATGCAGTTACATTGCGTTAAACCAC
TTCGGTGTGGCGCTGGTGCAGCGAATGCACGGTGGCGGGCCGGGAACTAC
CCGGGGTCAATATGACTTCCCTCCGGGAAATTGGTAGGCATTTGCGGAGC
CCCAACCCACCCTAAAAATTAAGGGAATCCCTAACCGCTCCCCCCAAAAA
AATAGCCAAAAAGGGAAAAAAACCCGGGGAAAAAAAAAAAAGGAAGGGGG
CGGGGTGTGAATTTTAGAGACAGAAAGGGAAACAAATAGGAAAAAGGGGG
GGCACTTTTTTTGGCGCCCTGGCGGGCGCGGGGGGCCTAAAAAACAAAAA
AACACAAGAAAGGGCCCCCTCGGGTGGGGGGTTAGCACCAAAAAA
back to top