DY262550

Overview
NameDY262550
Unique NameDY262550
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1290
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_NITEC (Ketol-acid reductoisomerase OS=Nitrosomonas eutropha (strain C91) GN=ilvC PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.472e-21
Identity = 69/217 (31.80%), Postives = 115/217 (53.00%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP--FTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            +I +IG+GSQG A A NL DS  E      V +GLRK   S+ +A+ AG T +     ++ E +  +D+V+LL+ D   A  Y+ ++   +K N+             Q I  +   ++ +I + PKG G  VR  Y+QG      G+ S  AVHQD  G+A ++AL ++ A G        TT ++E ++D+FGE+  L G +  ++++ F+  ++
Sbjct:   18 KIAIIGYGSQGHAHANNLNDSGVE------VIIGLRKDGASWDKAKKAGLTVK-----EVSEAVKDADIVMLLLPDEQMASIYQTEVEPALKKNATLAFAHGFNIHYGQIIPRE---DLDIIMIAPKGPGHLVRSTYIQG-----GGVPSLIAVHQDKSGKARDLALSYAAANGGTRGGVIETTFKEETETDLFGEQVVLCGGLTSLIQAGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_ANOFW (Ketol-acid reductoisomerase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=ilvC PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 5.922e-21
Identity = 73/217 (33.64%), Postives = 115/217 (53.00%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ +IG+GSQG A AQNLRDS  E      V +GLRKG +S+ +A   GF      +  + E    +D+V++L+ D  Q   Y E+I   ++P +             Q +    P ++ V  V PKG G  VRR Y +     GAG+ +  AV+QDV G A   AL ++ A+GS       TT ++E ++D+FGE+  L G +  +V++ F+  ++
Sbjct:   19 KVAIIGYGSQGHAHAQNLRDSGVE------VIIGLRKG-KSWEKAEQDGF-----VVLPVSEATKQADVVMILLPDEHQPKVYKEEIAPNLQPGNALVFAHGFNIHFNQIVP---PSDVDVFLVAPKGPGHLVRRTYTE-----GAGVPALIAVYQDVSGEAKETALAYAKAIGSARAGVIETTFKEETETDLFGEQAVLCGGLTALVKAGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_PETMO (Ketol-acid reductoisomerase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=ilvC PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 7.735e-21
Identity = 71/219 (32.42%), Postives = 114/219 (52.05%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET---ISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIG-LDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG--SPFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            I V+G+GSQG AQAQNL+DS       + V +GL+K S+S   A+  GF        ++YET   +   D++ +LI D  Q++ Y+K    ++PN                 G +  PKN+ V  V PK  G  VRR+Y++GK     G+    AVHQD  G+A  + L ++  +G        TT ++E ++D+FGE+  L G    ++++ F+  ++
Sbjct:   20 IAVLGYGSQGHAQAQNLKDS------GLKVIIGLKKDSKSKETAQRDGF--------EVYETSEAVKKGDIIQVLIPDEVQSEVYKKD---IEPNLDEGNALGFSHGFNIHFGQIVPPKNVDVFMVAPKSPGHLVRRMYLEGK-----GVPGLLAVHQDFSGKAKELGLSYAKGIGCTRAGVIKTTFKEETETDLFGEQAVLCGGTTSLIKAGFETLVE 216          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_DICTD (Ketol-acid reductoisomerase OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=ilvC PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 7.735e-21
Identity = 78/243 (32.10%), Postives = 120/243 (49.38%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLKRERMRIWLTEYPGRANKELIQNLLNQG 1052
            + +IG+GSQG A A NLRDS       I V V +R    S+  A   G T E      I + +  SD+++ LI D  Q   Y EK+   ++PN              Q +    P  + V  V PKG GP VR LYV+GK     G+ + FAV+QD   +  ++AL ++  +G+       TT ++E ++D+FGE+  L G V  ++++ F+  L     +  +  Y      +LI +L+NQG
Sbjct:   20 VTIIGYGSQGRAHALNLRDS------GIKVIVAVRPNGESWKRALEEGMTVEK-----IEDAVQKSDVLMFLIPDTEQPTIYKEKVLPYLRPNQALGFAHGFNIHFSQIVP---PPFLDVFMVAPKGPGPLVRDLYVEGK-----GVPALFAVYQDYTQKCRDIALAYAKGIGATRAGVLETTFKEETETDLFGEQVVLCGGVTALIKAGFET-LVEAGYQPEVAYYECLHEMKLIVDLINQG 242          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_CHLT3 (Ketol-acid reductoisomerase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=ilvC PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 7.735e-21
Identity = 71/212 (33.49%), Postives = 108/212 (50.94%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG--SPFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLF 956
            +I V+G+GSQG A A NL+DS       + V VGL++ S S+ +A  AG   E        E +  +D++++LI D  Q   YE  I   +KP               Q +    P N++VI + PK  G  VRR +V+G     AG+    AVHQ+VDG+A ++AL W+  LG        T  + E ++D+FGE+  L G    ++++ F
Sbjct:   18 KIAVLGFGSQGHAHALNLKDS------GMNVCVGLKENSASWVKAEKAGLMVEKTA-----EAVKWADIIMVLIPDQVQKAVYENDIAPNLKPGDTLAFGHGFNIHYKQIVP---PANVNVIMIAPKSPGHLVRRTFVEG-----AGVPCLIAVHQNVDGKAKDIALAWAKGLGGTKAGVIETNFKDETETDLFGEQAVLCGGSAELIKAGF 210          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_NITEU (Ketol-acid reductoisomerase OS=Nitrosomonas europaea GN=ilvC PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.010e-20
Identity = 68/217 (31.34%), Postives = 114/217 (52.53%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP--FTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ +IG+GSQG A A NL DS       + V +GLRKG  S+ +A+ AG T +     ++   +  +D+++LL+ D   A  Y+ ++   +K N+             Q I  +   ++ VI V PKG G  VR  Y QG      G+ S  AVHQD  G+A ++AL ++ A G        TT ++E ++D+FGE+  L G +  ++++ F+  ++
Sbjct:   18 KVAIIGYGSQGHAHANNLNDS------GVKVTIGLRKGGASWDKAKKAGLTVK-----EVGAAVKDADVIMLLLPDEQMASVYQTEVEPVLKKNATLAFAHGFNVHYGQIIPRE---DLDVIMVAPKGPGHLVRSTYTQG-----GGVPSLIAVHQDKSGKARDLALSYAAANGGTRGGVIETTFKEETETDLFGEQVVLCGGLTSLIQAGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_GEOSW (Ketol-acid reductoisomerase OS=Geobacillus sp. (strain WCH70) GN=ilvC PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.010e-20
Identity = 71/216 (32.87%), Postives = 116/216 (53.70%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            + +IG+GSQG A AQNLRD      S + V VGLRKG +S+ +A   GF      +  + E    +D+V++L+ D  Q + Y E+I   ++P +             Q +    P+++ V  V PKG G  VRR Y +     GAG+ +  AV+QDV G A   AL ++ A+G+       TT ++E ++D+FGE+  L G +  ++++ F+  ++
Sbjct:   20 VAIIGYGSQGHAHAQNLRD------SGVNVIVGLRKG-KSWEQAEKDGF-----AVYSVREATKQADIVMVLLPDEKQPNVYKEEIEPELQPGNALVFAHGFNIHFNQIVP---PEHVDVFLVAPKGPGHLVRRTYTE-----GAGVPALIAVYQDVTGEAKQTALAYAKAIGATRAGVLETTFKEETETDLFGEQAVLCGGLTSLIKAGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_DESHY (Ketol-acid reductoisomerase OS=Desulfitobacterium hafniense (strain Y51) GN=ilvC PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.010e-20
Identity = 73/211 (34.60%), Postives = 108/211 (51.18%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIG-LDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG--SPFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLF 956
            I V+G+GSQG AQAQNL+D      S + V +GLR  SR + +A AAG       +  + E  + +DL+ +L+ D  QA  YEK    +KP+                 G +  P ++ V  V PK  G  VRR Y +     GAG+    AVHQD  GRA ++AL ++  +G        TT ++E ++D+FGE+  L G V  ++ + F
Sbjct:   20 IAVMGYGSQGHAQAQNLKD------SGLNVVIGLRADSRRWKQAEAAGL-----KVATVAEAAAQADLIQILLPDERQASVYEKE---IKPHLTAGKCLVFSHGFNIHFGQIVPPADVDVFMVAPKSPGHLVRRTYEE-----GAGVPGLIAVHQDASGRAYDLALAYAKGIGCTRAGVLETTFKEETETDLFGEQAVLCGGVSELIRAGF 211          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_DESHD (Ketol-acid reductoisomerase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=ilvC PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.010e-20
Identity = 73/211 (34.60%), Postives = 108/211 (51.18%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIG-LDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG--SPFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLF 956
            I V+G+GSQG AQAQNL+D      S + V +GLR  SR + +A AAG       +  + E  + +DL+ +L+ D  QA  YEK    +KP+                 G +  P ++ V  V PK  G  VRR Y +     GAG+    AVHQD  GRA ++AL ++  +G        TT ++E ++D+FGE+  L G V  ++ + F
Sbjct:   20 IAVMGYGSQGHAQAQNLKD------SGLNVVIGLRADSRRWKQAEAAGL-----KVATVAEAAAQADLIQILLPDERQASVYEKE---IKPHLTAGKCLVFSHGFNIHFGQIVPPADVDVFMVAPKSPGHLVRRTYEE-----GAGVPGLIAVHQDASGRAYDLALAYAKGIGCTRAGVLETTFKEETETDLFGEQAVLCGGVSELIRAGF 211          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_CORU7 (Ketol-acid reductoisomerase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=ilvC PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.010e-20
Identity = 74/213 (34.74%), Postives = 108/213 (50.70%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFK 959
            ++ +IG+GSQG A AQNLR+S  E      V +GLR+GS+S  +A  AGF   N       E    +D+++LL  D +QA  YE   + + PN                 G+  P+ NI++  V PKG G  VRR YV GK     G+    AV QD  G   ++AL ++ A+G        TT E E  +D+FGE+  L G    ++++ F+
Sbjct:   20 KVAIIGYGSQGHAHAQNLRESGVE------VAIGLREGSKSREKAEEAGFKVLNNA-----EASEWADVIMLLAPDTSQAQIYE---NDIAPNLKDGDALFFGHGLNIHFGMIKPEDNITIGMVAPKGPGHLVRRQYVDGK-----GVPCLIAVEQDPKGNGRDLALSYAAAIGGGRAGVIPTTFEAETVTDLFGEQAVLCGGTEELIKTGFE 213          
The following BLAST results are available for this feature:
BLAST of DY262550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ILVC_NITEC3.472e-2131.80Ketol-acid reductoisomerase OS=Nitrosomonas eutrop... [more]
ILVC_ANOFW5.922e-2133.64Ketol-acid reductoisomerase OS=Anoxybacillus flavi... [more]
ILVC_PETMO7.735e-2132.42Ketol-acid reductoisomerase OS=Petrotoga mobilis (... [more]
ILVC_DICTD7.735e-2132.10Ketol-acid reductoisomerase OS=Dictyoglomus turgid... [more]
ILVC_CHLT37.735e-2133.49Ketol-acid reductoisomerase OS=Chloroherpeton thal... [more]
ILVC_NITEU1.010e-2031.34Ketol-acid reductoisomerase OS=Nitrosomonas europa... [more]
ILVC_GEOSW1.010e-2032.87Ketol-acid reductoisomerase OS=Geobacillus sp. (st... [more]
ILVC_DESHY1.010e-2034.60Ketol-acid reductoisomerase OS=Desulfitobacterium ... [more]
ILVC_DESHD1.010e-2034.60Ketol-acid reductoisomerase OS=Desulfitobacterium ... [more]
ILVC_CORU71.010e-2034.74Ketol-acid reductoisomerase OS=Corynebacterium ure... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100BB09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262550 ID=DY262550; Name=DY262550; organism=Citrus clementina; type=EST; length=1290bp
CGGGTACTTTACCACTTAGCCCGTCGATCCCCAAATTGAGTCCATCGCCG
TCGTCCGAAACCCTAAAAGGAGCACTCAAGCATCTCAATCTAGCGTTTTT
CTCATCCACCGCGAAGTCCTTGAGAGCTCTCAAAACTACCAGAGGCAGGG
GCTCAGCTCTCGGCGCTCGGATGGCGTCCGAGACAGCTCTCAGGACACCT
TTCTTGCTGGATTTTGAGACATCCGTCTTTAAGAAGGACGCGATATCACT
GGCTGACCGCGATGAGTTCATTGTGAGAGGAGGAAGGGATTTGTTTAAGT
TGCTGCCGGACGCATTCAACGGGATTAACCAGATTGGGGTGATTGGCTGG
GGTTCCCAGGGACCTGCCCAAGCTCAGAATTTGAGGGATTCCCTTGCTGA
AGCTAAATCTGATATTGTTGTCAAGGTTGGGCTTAGGAAGGGCTCTCGTT
CTTTTGCTGAAGCTCGTGCTGCTGGTTTTACTGAAGAGAATGGAACTTTG
GGGGATATATATGAAACTATTTCAGGCAGTGATCTTGTGTTATTGTTGAT
TTCTGATGCTGCTCAGGCAGATAATTATGAGAAGATATTCTCTTGCATGA
AACCAAACAGCATCCTTGGACTTTCCCATGGGTTTCTTCTTGGGCATTTG
CAGTCAATAGGACTTGATTTCCCAAAGAATATCAGTGTGATTGCTGTGTG
TCCCAAGGGAATGGGTCCATCTGTGAGGAGACTCTATGTTCAAGGCAAAG
AGATTAATGGTGCTGGAATTAATTCCAGTTTTGCTGTCCACCAGGATGTT
GATGGAAGAGCTACCAATGTCGCCCTAGGATGGTCAGTTGCCCTTGGTTC
TCCTTTCACATTTGCCACCACATTAGAACAGGAGTACAAGAGTGACATCT
TTGGGGAGCGTGGCTTTCTACTTGGTGCTGTTCATGGAATTGTGGAATCC
TTGTTTAAAAGGTTCCTGAAAAGGGAAAGGATGAGGATCTGGCTTACAGA
ATACCCTGGAAGGGCAAACAAGGAATTAATCCAAAATCTTCTCAATCAGG
GGTATGTTGGCGGTTTAAAATTCCTTCCCTGAAAAAAAAAAAAGGGAATT
TGAAAAAGTTTAATAGGCCTCCAATTAACCCTGGCAGGAAAATTTAAAAA
AGGGGCCTAAAAAAATGGGGGGGCGGGGGGGGGAAAACCCCACGGTTGGT
TTGGGGGGGGGGCCGGGTTTTTTATAAAAAAGAAGGGTTTCCCACCTCTT
TTCCCCCTGGGAAAAAAAAATAAGAATAATAACCCCCGCG
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