DY262550

Overview
NameDY262550
Unique NameDY262550
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1290
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_HELHP (Ketol-acid reductoisomerase OS=Helicobacter hepaticus GN=ilvC PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 7.239e-19
Identity = 72/218 (33.03%), Postives = 112/218 (51.38%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD-GRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ VIG+GSQG A A+NLRDS  E      V +GL +G  S+ +A A GF      + ++ E    +D++++LI D  QAD + K I   +  + I            Q   +  PK + VI V PK  G +VR  +V+     G GI    AV QD   G A  +AL ++ A+G   +    TT + E ++D+FGE+  L G V  +V++ F+  ++
Sbjct:   20 KVAVIGFGSQGHAHAENLRDSGVE------VIIGLYRGGSSWVKAEAKGF-----KVLEVSEATKVADVIMILIPDELQADVFAKDILPSLSEDKIIAFGHGFNIHFGQ---IKAPKGVGVIMVAPKAPGHTVRSEFVK-----GGGIPDLIAVEQDTSRGDAKAIALSYASAIGGGRSGIIETTFKDETETDLFGEQAVLCGGVTSLVKAGFETLVE 218          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_CHLSY (Ketol-acid reductoisomerase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=ilvC PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 7.239e-19
Identity = 73/216 (33.80%), Postives = 106/216 (49.07%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG--SPFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            I +IG+GSQG A A+NL D      S + V+VGL  GS+S+A+  AAG       +  + E    + +V++L  D  QAD Y E I   M+P               Q I    P+ I V  V PK  G  VR ++VQ     G G+ +  AV QD  G A   AL ++  LG        TT  +E ++D+FGE+  L G V  +V++ F+  ++
Sbjct:   20 IAIIGFGSQGHAHARNLAD------SGLDVRVGLYPGSKSWAKVEAAGL-----KVMTVAEAAREAQIVMILTPDIGQADLYREHIAPAMEPGKTLMFAHGFNIRFGQIIP---PQGIDVSMVAPKAPGHRVREVFVQ-----GGGVPALIAVEQDATGGAFEDALAYAKGLGCTRAGVLRTTFAEETETDLFGEQVVLCGGVSALVKAAFETLVE 216          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_CHLAA (Ketol-acid reductoisomerase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=ilvC PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 7.239e-19
Identity = 73/216 (33.80%), Postives = 106/216 (49.07%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG--SPFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            I +IG+GSQG A A+NL D      S + V+VGL  GS+S+A+  AAG       +  + E    + +V++L  D  QAD Y E I   M+P               Q I    P+ I V  V PK  G  VR ++VQ     G G+ +  AV QD  G A   AL ++  LG        TT  +E ++D+FGE+  L G V  +V++ F+  ++
Sbjct:   20 IAIIGFGSQGHAHARNLAD------SGLDVRVGLYPGSKSWAKVEAAGL-----KVMTVAEAAREAQIVMILTPDIGQADLYREHIAPAMEPGKTLMFAHGFNIRFGQIIP---PQGIDVSMVAPKAPGHRVREVFVQ-----GGGVPALIAVEQDATGGAFEDALAYAKGLGCTRAGVLRTTFAEETETDLFGEQVVLCGGVSALVKAAFETLVE 216          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_XANAC (Ketol-acid reductoisomerase OS=Xanthomonas axonopodis pv. citri GN=ilvC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 9.455e-19
Identity = 73/213 (34.27%), Postives = 107/213 (50.23%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFK 959
            +I +IG+GSQG A A NLRD      S   V VGLR G  + A+A+A GFT    +     E +  +DLV +L  D  Q   YE++ +   PN                  +  P+ ++ V+ V PKG G  VRR Y    EI G G+   +AV+QD  G+A   AL ++  LG        TT ++E ++D+FGE+  L G    +V++ F+
Sbjct:    8 KIAIIGYGSQGRAHALNLRD------SGFDVTVGLRPGGPTEAKAQADGFTVVAPS-----EAVKSADLVAILTPDMVQKKLYEEVIA---PNMKQGACLLFAHGLNVHFDMITPRADLDVVLVAPKGPGALVRREY----EI-GRGVPCIYAVYQDTSGKAEQFALTYAGGLGGARANIIKTTFKEETETDLFGEQAVLCGGASSLVQAGFE 201          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_TRIEI (Ketol-acid reductoisomerase OS=Trichodesmium erythraeum (strain IMS101) GN=ilvC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 9.455e-19
Identity = 70/219 (31.96%), Postives = 111/219 (50.68%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---ETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            I +IG+GSQG A A NL+DS ++      V VGL  GS+S  +A+ AG         D+Y   E    +DL+++L+ D  Q   Y+ +I   +K   I            Q I    P+N+ V+ V PKG G  VRR Y QG+     G+   FA+ QD  G+  + A+ ++  +G        TT  +E ++D+FGE+  L G +  ++++ F+  +K
Sbjct:   20 IAIIGYGSQGHAHALNLKDSGSK------VIVGLYSGSKSATKAKDAGL--------DVYPVDEAAEKADLIMILLPDEVQKTVYKNQIEPHLKEGKILAFAHGFNIHFGQIIP---PENVDVVMVAPKGPGHLVRRTYEQGE-----GVPCLFAIFQDASGQGRDRAMAYAKGIGGTRAGILETTFREETETDLFGEQVVLCGGLSALIKAGFETLVK 216          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_PSEFS (Ketol-acid reductoisomerase OS=Pseudomonas fluorescens (strain SBW25) GN=ilvC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 9.455e-19
Identity = 69/217 (31.80%), Postives = 111/217 (51.15%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ +IG+GSQG AQA NL+DS       + V VGLRKGS + A+A A G       + D+   ++ +DLV++L  D  Q+  Y+     ++PN                     P+ ++ VI + PK  G +VR  +V+G      GI    A++QD  G A NVAL ++  +G   T    TT + E ++D+FGE+  L G    +V++ F+  ++
Sbjct:   18 KVAIIGYGSQGHAQACNLKDS------GVDVTVGLRKGSATVAKAEAHGLK-----VTDVASAVAAADLVMILTPDEFQSALYKNE---IEPNIKKGATLAFSHGFAIHYNQVVPRADLDVIMIAPKAPGHTVRSEFVKG-----GGIPDLIAIYQDASGNAKNVALSYAAGVGGGRTGIIETTFKDETETDLFGEQAVLCGGTVELVKAGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_METMJ (Ketol-acid reductoisomerase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=ilvC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 9.455e-19
Identity = 69/212 (32.55%), Postives = 108/212 (50.94%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFK 959
            I VIG+GSQG  QA NLRDS         V +GLR G  S+ +A   GF      +  + E +  +D++ +L+ D  QA  Y  +I   ++ N+             Q +    P  + V+ V PKG G  VRR Y +GK     G+ +  AVHQD  G+A  +AL ++  +G+     F TT  +E ++D+FGE+  L G +  ++++ F+
Sbjct:   20 IAVIGYGSQGRGQALNLRDSGCR------VVIGLRPGG-SWQKASEDGF-----EVYSVAEAVKRADVIQILLPDENQAAVYRAEISPNIRENACLMFSHGFNIHYGQIVP---PPTVDVVMVAPKGPGHMVRRTYEEGK-----GVPALIAVHQDATGQARAIALAYARGIGATRAVVFETTFAEETETDLFGEQAVLCGGITSLIKAGFE 211          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_CORJK (Ketol-acid reductoisomerase OS=Corynebacterium jeikeium (strain K411) GN=ilvC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 9.455e-19
Identity = 74/214 (34.58%), Postives = 108/214 (50.47%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFS-CMKPNSIXXXXXXXXXXXXQSIGLDFP-KNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFK 959
            ++ +IG+GSQG A AQNLR+S  E      V +GLR+GS+S A+A  AGFT +        E    +D+++LL  D +QA    KIF+  ++PN                  L  P  NI +  V PKG G  VRR +V GK     G+    AV QD      ++AL ++ A+G        TT E E  +D+FGE+  L G    ++++ F+
Sbjct:   20 KVAIIGYGSQGHAHAQNLRESGVE------VVIGLREGSKSRAKAEEAGFTVKTNA-----EAAEWADVIMLLAPDTSQA----KIFAEDIEPNLNDGDALFFGHGLNIHFKLIEPADNIIIGMVAPKGPGHLVRRQFVDGK-----GVPCLIAVEQDPKNNGRDLALSYAAAIGGARAGVIPTTFEAETVTDLFGEQAVLCGGTEELIKTGFE 213          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_AZOSE (Ketol-acid reductoisomerase OS=Azoarcus sp. (strain EbN1) GN=ilvC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 9.455e-19
Identity = 69/213 (32.39%), Postives = 108/213 (50.70%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA-AQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP--FTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFK 959
            QI ++G+GSQG A AQNL+DS  +      V VGLRK   S+ +A AAG       + ++ E +S +D+V++L+ D       Y  +   +K  +             Q +  D   ++ VI V PKG G +VR  Y++G      G+ S  AVHQD  G+A ++AL ++ A G        T   +E ++D+FGE+  L G    +V+  F+
Sbjct:   18 QITIVGYGSQGHAHAQNLKDSGCK------VTVGLRKSGASWKKAEAAGLD-----VREVAEAVSNADIVMILLPDENIPGVYYNDVEPNIKQGATLAFAHGFNVHYNQVVPRD---DLDVIMVAPKGPGHTVRSEYLKG-----GGVPSLIAVHQDRSGKAKDIALSYAAANGGTKGGVIETNFREETETDLFGEQAVLCGGAVELVKMGFE 211          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_THETN (Ketol-acid reductoisomerase OS=Thermoanaerobacter tengcongensis GN=ilvC PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.235e-18
Identity = 71/217 (32.72%), Postives = 111/217 (51.15%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFA--TTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            +I VIG+GSQG A A NLRDS  +      V VGL +GS+S   A   G T     +  + E    +D++++LI D  QA  Y E I   +                 Q +    P+N+ V  V PKG G  VRR+Y +GK     G+    AVHQ+  G+A ++AL ++  +G     A  TT ++E ++D+FGE+  L G +  ++++ F+  ++
Sbjct:   19 KIAVIGFGSQGHAHALNLRDSGFD------VVVGLYEGSKSKERAEKEGLT-----VLTVEEAAKVADVIMMLIPDEKQAKVYKESIEKNLTEGKALAFAHGFNIHFKQIVP---PENVDVFMVAPKGPGHLVRRMYQEGK-----GVPCLVAVHQNYTGKALDIALAYAKGIGGTKAGAIETTFKEETETDLFGEQAVLCGGLTELMKAGFETLVE 216          
The following BLAST results are available for this feature:
BLAST of DY262550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ILVC_HELHP7.239e-1933.03Ketol-acid reductoisomerase OS=Helicobacter hepati... [more]
ILVC_CHLSY7.239e-1933.80Ketol-acid reductoisomerase OS=Chloroflexus aurant... [more]
ILVC_CHLAA7.239e-1933.80Ketol-acid reductoisomerase OS=Chloroflexus aurant... [more]
ILVC_XANAC9.455e-1934.27Ketol-acid reductoisomerase OS=Xanthomonas axonopo... [more]
ILVC_TRIEI9.455e-1931.96Ketol-acid reductoisomerase OS=Trichodesmium eryth... [more]
ILVC_PSEFS9.455e-1931.80Ketol-acid reductoisomerase OS=Pseudomonas fluores... [more]
ILVC_METMJ9.455e-1932.55Ketol-acid reductoisomerase OS=Methanoculleus mari... [more]
ILVC_CORJK9.455e-1934.58Ketol-acid reductoisomerase OS=Corynebacterium jei... [more]
ILVC_AZOSE9.455e-1932.39Ketol-acid reductoisomerase OS=Azoarcus sp. (strai... [more]
ILVC_THETN1.235e-1832.72Ketol-acid reductoisomerase OS=Thermoanaerobacter ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100BB09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262550 ID=DY262550; Name=DY262550; organism=Citrus clementina; type=EST; length=1290bp
CGGGTACTTTACCACTTAGCCCGTCGATCCCCAAATTGAGTCCATCGCCG
TCGTCCGAAACCCTAAAAGGAGCACTCAAGCATCTCAATCTAGCGTTTTT
CTCATCCACCGCGAAGTCCTTGAGAGCTCTCAAAACTACCAGAGGCAGGG
GCTCAGCTCTCGGCGCTCGGATGGCGTCCGAGACAGCTCTCAGGACACCT
TTCTTGCTGGATTTTGAGACATCCGTCTTTAAGAAGGACGCGATATCACT
GGCTGACCGCGATGAGTTCATTGTGAGAGGAGGAAGGGATTTGTTTAAGT
TGCTGCCGGACGCATTCAACGGGATTAACCAGATTGGGGTGATTGGCTGG
GGTTCCCAGGGACCTGCCCAAGCTCAGAATTTGAGGGATTCCCTTGCTGA
AGCTAAATCTGATATTGTTGTCAAGGTTGGGCTTAGGAAGGGCTCTCGTT
CTTTTGCTGAAGCTCGTGCTGCTGGTTTTACTGAAGAGAATGGAACTTTG
GGGGATATATATGAAACTATTTCAGGCAGTGATCTTGTGTTATTGTTGAT
TTCTGATGCTGCTCAGGCAGATAATTATGAGAAGATATTCTCTTGCATGA
AACCAAACAGCATCCTTGGACTTTCCCATGGGTTTCTTCTTGGGCATTTG
CAGTCAATAGGACTTGATTTCCCAAAGAATATCAGTGTGATTGCTGTGTG
TCCCAAGGGAATGGGTCCATCTGTGAGGAGACTCTATGTTCAAGGCAAAG
AGATTAATGGTGCTGGAATTAATTCCAGTTTTGCTGTCCACCAGGATGTT
GATGGAAGAGCTACCAATGTCGCCCTAGGATGGTCAGTTGCCCTTGGTTC
TCCTTTCACATTTGCCACCACATTAGAACAGGAGTACAAGAGTGACATCT
TTGGGGAGCGTGGCTTTCTACTTGGTGCTGTTCATGGAATTGTGGAATCC
TTGTTTAAAAGGTTCCTGAAAAGGGAAAGGATGAGGATCTGGCTTACAGA
ATACCCTGGAAGGGCAAACAAGGAATTAATCCAAAATCTTCTCAATCAGG
GGTATGTTGGCGGTTTAAAATTCCTTCCCTGAAAAAAAAAAAAGGGAATT
TGAAAAAGTTTAATAGGCCTCCAATTAACCCTGGCAGGAAAATTTAAAAA
AGGGGCCTAAAAAAATGGGGGGGCGGGGGGGGGAAAACCCCACGGTTGGT
TTGGGGGGGGGGCCGGGTTTTTTATAAAAAAGAAGGGTTTCCCACCTCTT
TTCCCCCTGGGAAAAAAAAATAAGAATAATAACCCCCGCG
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