DY262550

Overview
NameDY262550
Unique NameDY262550
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1290
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_PSEMY (Ketol-acid reductoisomerase OS=Pseudomonas mendocina (strain ymp) GN=ilvC PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.235e-18
Identity = 69/217 (31.80%), Postives = 110/217 (50.69%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ +IG+GSQG AQA NL+DS       + V +GLRKGS + A+A A G       + D+   ++ +DLV++L  D  Q   Y+     ++PN                     P+ ++ VI + PK  G +VR  +V+G      GI    AV+QD  G A NVAL ++  +G   T    TT + E ++D+FGE+  L G    +V++ F+  ++
Sbjct:   18 KVAIIGYGSQGHAQACNLKDS------GVDVTIGLRKGSATVAKAEAHGLK-----VTDVASAVAAADLVMILTPDEFQGQLYKNE---IEPNIKKGATLAFSHGFAIHYNQVVPRADLDVIMIAPKAPGHTVRTEFVKG-----GGIPDLIAVYQDASGNAKNVALSYASGVGGGRTGIIETTFKDETETDLFGEQAVLCGGTVELVKAGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_HERA2 (Ketol-acid reductoisomerase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=ilvC PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.235e-18
Identity = 67/216 (31.02%), Postives = 107/216 (49.54%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            + +IG+GSQG A A NL+DS       + V VGL +GS+S A+A AAG       +  + E    +D+V++L+ D  QA  Y ++I   +KPN+             Q +    P  + V  + PK  G  VR ++      +G G+    AV+QD  G A   AL +   +G        TT  +E ++D+FGE+  L G V  +V++ F+  ++
Sbjct:   20 VAIIGYGSQGHAHALNLKDS------GVQVVVGLHEGSKSKAKAEAAGLQ-----VLSVGEATKAADVVMVLVPDTTQAQLYSDEIAPNLKPNATLMFAHGFNIRYGQIVP---PAGVDVSLIAPKSPGHRVREVFE-----HGGGVPGLVAVYQDASGEALQNALAYGKGIGCARAGVLETTFAEETETDLFGEQAILCGGVSALVKAGFETLVE 216          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_HELPS (Ketol-acid reductoisomerase OS=Helicobacter pylori (strain Shi470) GN=ilvC PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.235e-18
Identity = 67/218 (30.73%), Postives = 110/218 (50.46%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD-GRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            Q+G+IG+G+QG AQA NLRD      S + V++GL +GS S  +A+A GF      + ++ E +  SDL++ L+ D    +  EK +   +K   I            Q +    PK +  I V PKG G ++R  Y++ +     G+    A+ Q+     A  VAL ++ A+G        T+ ++E +SD+FGE+  L G +  I+   F+  +K
Sbjct:   20 QVGIIGYGAQGEAQALNLRD------SKVKVRIGLYQGSLSVPKAKAEGF-----EVLEVKELVQQSDLIMALLPDELHKEVLEKEVIPFLKEGQIVGFAHGFSVHFNQVV---LPKGVGAILVAPKGPGSALREEYLKNR-----GLYHLIAIEQESSKNNAKAVALSYAKAMGGGRMGVLETSFKEECESDLFGEQAVLCGGLEAIIRMGFETLIK 218          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_HAHCH (Ketol-acid reductoisomerase OS=Hahella chejuensis (strain KCTC 2396) GN=ilvC PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.235e-18
Identity = 69/217 (31.80%), Postives = 113/217 (52.07%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ +IG+GSQG A A NL+D      S + V VGLRKGS S+A+A  AG       + ++ E ++G+D+V++L  D  QA  Y+   S ++PN                     P+ ++ VI + PK  G +VR  +V+     G GI    A+ QD  G A ++AL ++  +G   T    TT + E ++D+FGE+  L G    +V++ F+  ++
Sbjct:   18 KVAIIGYGSQGHAHANNLKD------SGVDVCVGLRKGSGSWAKAENAGL-----AVKEVAEAVAGADVVMILTPDEFQAQLYK---SEIEPNLKSGATLAFAHGFSIHYNQIVPRADLDVIMIAPKAPGHTVRSEFVK-----GGGIPDLIAIFQDASGSAKDLALSYASGVGGGRTGIIETTFKDETETDLFGEQAVLCGGAVELVKAGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_CALS8 (Ketol-acid reductoisomerase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=ilvC PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.235e-18
Identity = 68/211 (32.23%), Postives = 107/211 (50.71%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLF 956
            + VIG+GSQG A A NLRDS       I V VGL  GS+S+A+A + G            E    +D++++L++D  Q   Y E I   +K                Q +    P  + VI + PKG G +VR  Y +GK     G+ +  AVHQD  G+A ++AL ++  +G+       TT ++E ++D+FGE+  L G +  ++++ F
Sbjct:   20 VAVIGFGSQGHAHALNLRDS------GINVVVGLYHGSKSWAKAESHGLKVMTAD-----EATKAADIIMILVNDEKQPKLYKESIEPNLKEGKAIAFAHGFNIHFGQIVP---PPYVDVIMIAPKGPGHTVRSQYEEGK-----GVPALVAVHQDYTGKALDIALAYAKGIGASRAGIILTTFKEETETDLFGEQAVLCGGLTELIKAGF 211          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_THEPX (Ketol-acid reductoisomerase OS=Thermoanaerobacter sp. (strain X514) GN=ilvC PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.613e-18
Identity = 70/217 (32.26%), Postives = 109/217 (50.23%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            +I +IG+GSQG A A NLRDS       + V VGL +GS+S   A   G       +  + E    +D++++LI D  QA  Y E I   +                 Q +    PKN+ V  V PKG G  VRR+Y +GK     G+ +  AV+QD  G+A  +AL ++  +G        TT ++E ++D+FGE+  L G V  ++++ F+  ++
Sbjct:   19 KIAIIGFGSQGHAHALNLRDS------GLDVIVGLYEGSKSKERAEKEGLR-----VYTVEEAAKVADIIMMLIPDEKQAKVYKESIEKNLTEGKALAFAHGFNIHFKQIVP---PKNVDVFMVAPKGPGHLVRRVYQEGK-----GVPNLVAVYQDYTGKAFEIALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGVTELMKAGFETLVE 216          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_SULSY (Ketol-acid reductoisomerase OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=ilvC PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.613e-18
Identity = 68/219 (31.05%), Postives = 109/219 (49.77%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKN-ISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            + +IG+GSQG A A NLRD      S I V +GL  GSRS  +A+A GF        ++Y   E    +D++++L  D  Q   Y+   S + PN                 G   P + + V  V PKG G  VR +Y +GK     G+   FAV+QD  G+A  +A+ ++  +G+       TT ++E ++D+FGE+  L G    ++++ F+  ++
Sbjct:   20 VAIIGYGSQGHAHALNLRD------SGIKVIIGLLAGSRSIEKAKAEGF--------EVYSPDEAAKKADVIMILTPDTVQPALYQ---SAILPNLDEGNALAFAHGFNIHFGQIVPPSYVDVFLVAPKGPGHLVRWMYEEGK-----GVPGLFAVYQDFTGKAREIAMAYAKGIGATRAGLIETTFKEETETDLFGEQAVLCGGATALIKAGFETLIE 216          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_PSEPW (Ketol-acid reductoisomerase OS=Pseudomonas putida (strain W619) GN=ilvC PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.613e-18
Identity = 69/217 (31.80%), Postives = 110/217 (50.69%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ +IG+GSQG AQA NL+DS       + V VGLRKGS + A+A A G       + D+   ++ +DLV++L  D  Q   Y+     ++PN                     P+ ++ VI + PK  G +VR  +V+G      GI    A++QD  G A NVAL ++  +G   T    TT + E ++D+FGE+  L G    +V++ F+  ++
Sbjct:   18 KVAIIGYGSQGHAQACNLKDS------GVDVTVGLRKGSATVAKAEAHGLK-----VADVATAVAAADLVMILTPDEFQGALYKNE---IEPNIKKGATLAFSHGFSIHYNQVVPRADLDVIMIAPKAPGHTVRSEFVKG-----GGIPDLIAIYQDASGNAKNVALSYASGVGGGRTGIIETTFKDETETDLFGEQAVLCGGTVELVKAGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_PSEPK (Ketol-acid reductoisomerase OS=Pseudomonas putida (strain KT2440) GN=ilvC PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.613e-18
Identity = 69/217 (31.80%), Postives = 110/217 (50.69%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ +IG+GSQG AQA NL+DS       + V VGLRKGS + A+A A G       + D+   ++ +DLV++L  D  Q   Y+     ++PN                     P+ ++ VI + PK  G +VR  +V+G      GI    A++QD  G A NVAL ++  +G   T    TT + E ++D+FGE+  L G    +V++ F+  ++
Sbjct:   18 KVAIIGYGSQGHAQACNLKDS------GVDVTVGLRKGSATVAKAEAHGLK-----VADVATAVAAADLVMILTPDEFQGALYKNE---IEPNIKKGATLAFSHGFSIHYNQVVPRADLDVIMIAPKAPGHTVRSEFVKG-----GGIPDLIAIYQDASGNAKNVALSYASGVGGGRTGIIETTFKDETETDLFGEQAVLCGGTVELVKAGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_PSEPG (Ketol-acid reductoisomerase OS=Pseudomonas putida (strain GB-1) GN=ilvC PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.613e-18
Identity = 69/217 (31.80%), Postives = 110/217 (50.69%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ +IG+GSQG AQA NL+DS       + V VGLRKGS + A+A A G       + D+   ++ +DLV++L  D  Q   Y+     ++PN                     P+ ++ VI + PK  G +VR  +V+G      GI    A++QD  G A NVAL ++  +G   T    TT + E ++D+FGE+  L G    +V++ F+  ++
Sbjct:   18 KVAIIGYGSQGHAQACNLKDS------GVDVTVGLRKGSATVAKAEAHGLK-----VADVATAVAAADLVMILTPDEFQGALYKNE---IEPNIKKGATLAFSHGFSIHYNQVVPRADLDVIMIAPKAPGHTVRSEFVKG-----GGIPDLIAIYQDASGNAKNVALSYASGVGGGRTGIIETTFKDETETDLFGEQAVLCGGTVELVKAGFETLVE 215          
The following BLAST results are available for this feature:
BLAST of DY262550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ILVC_PSEMY1.235e-1831.80Ketol-acid reductoisomerase OS=Pseudomonas mendoci... [more]
ILVC_HERA21.235e-1831.02Ketol-acid reductoisomerase OS=Herpetosiphon auran... [more]
ILVC_HELPS1.235e-1830.73Ketol-acid reductoisomerase OS=Helicobacter pylori... [more]
ILVC_HAHCH1.235e-1831.80Ketol-acid reductoisomerase OS=Hahella chejuensis ... [more]
ILVC_CALS81.235e-1832.23Ketol-acid reductoisomerase OS=Caldicellulosirupto... [more]
ILVC_THEPX1.613e-1832.26Ketol-acid reductoisomerase OS=Thermoanaerobacter ... [more]
ILVC_SULSY1.613e-1831.05Ketol-acid reductoisomerase OS=Sulfurihydrogenibiu... [more]
ILVC_PSEPW1.613e-1831.80Ketol-acid reductoisomerase OS=Pseudomonas putida ... [more]
ILVC_PSEPK1.613e-1831.80Ketol-acid reductoisomerase OS=Pseudomonas putida ... [more]
ILVC_PSEPG1.613e-1831.80Ketol-acid reductoisomerase OS=Pseudomonas putida ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA100BB09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262550 ID=DY262550; Name=DY262550; organism=Citrus clementina; type=EST; length=1290bp
CGGGTACTTTACCACTTAGCCCGTCGATCCCCAAATTGAGTCCATCGCCG
TCGTCCGAAACCCTAAAAGGAGCACTCAAGCATCTCAATCTAGCGTTTTT
CTCATCCACCGCGAAGTCCTTGAGAGCTCTCAAAACTACCAGAGGCAGGG
GCTCAGCTCTCGGCGCTCGGATGGCGTCCGAGACAGCTCTCAGGACACCT
TTCTTGCTGGATTTTGAGACATCCGTCTTTAAGAAGGACGCGATATCACT
GGCTGACCGCGATGAGTTCATTGTGAGAGGAGGAAGGGATTTGTTTAAGT
TGCTGCCGGACGCATTCAACGGGATTAACCAGATTGGGGTGATTGGCTGG
GGTTCCCAGGGACCTGCCCAAGCTCAGAATTTGAGGGATTCCCTTGCTGA
AGCTAAATCTGATATTGTTGTCAAGGTTGGGCTTAGGAAGGGCTCTCGTT
CTTTTGCTGAAGCTCGTGCTGCTGGTTTTACTGAAGAGAATGGAACTTTG
GGGGATATATATGAAACTATTTCAGGCAGTGATCTTGTGTTATTGTTGAT
TTCTGATGCTGCTCAGGCAGATAATTATGAGAAGATATTCTCTTGCATGA
AACCAAACAGCATCCTTGGACTTTCCCATGGGTTTCTTCTTGGGCATTTG
CAGTCAATAGGACTTGATTTCCCAAAGAATATCAGTGTGATTGCTGTGTG
TCCCAAGGGAATGGGTCCATCTGTGAGGAGACTCTATGTTCAAGGCAAAG
AGATTAATGGTGCTGGAATTAATTCCAGTTTTGCTGTCCACCAGGATGTT
GATGGAAGAGCTACCAATGTCGCCCTAGGATGGTCAGTTGCCCTTGGTTC
TCCTTTCACATTTGCCACCACATTAGAACAGGAGTACAAGAGTGACATCT
TTGGGGAGCGTGGCTTTCTACTTGGTGCTGTTCATGGAATTGTGGAATCC
TTGTTTAAAAGGTTCCTGAAAAGGGAAAGGATGAGGATCTGGCTTACAGA
ATACCCTGGAAGGGCAAACAAGGAATTAATCCAAAATCTTCTCAATCAGG
GGTATGTTGGCGGTTTAAAATTCCTTCCCTGAAAAAAAAAAAAGGGAATT
TGAAAAAGTTTAATAGGCCTCCAATTAACCCTGGCAGGAAAATTTAAAAA
AGGGGCCTAAAAAAATGGGGGGGCGGGGGGGGGAAAACCCCACGGTTGGT
TTGGGGGGGGGGCCGGGTTTTTTATAAAAAAGAAGGGTTTCCCACCTCTT
TTCCCCCTGGGAAAAAAAAATAAGAATAATAACCCCCGCG
back to top