DY262550

Overview
NameDY262550
Unique NameDY262550
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1290
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_PSEP1 (Ketol-acid reductoisomerase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=ilvC PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.613e-18
Identity = 69/217 (31.80%), Postives = 110/217 (50.69%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ +IG+GSQG AQA NL+DS       + V VGLRKGS + A+A A G       + D+   ++ +DLV++L  D  Q   Y+     ++PN                     P+ ++ VI + PK  G +VR  +V+G      GI    A++QD  G A NVAL ++  +G   T    TT + E ++D+FGE+  L G    +V++ F+  ++
Sbjct:   18 KVAIIGYGSQGHAQACNLKDS------GVDVTVGLRKGSATVAKAEAHGLK-----VADVATAVAAADLVMILTPDEFQGALYKNE---IEPNIKKGATLAFSHGFSIHYNQVVPRADLDVIMIAPKAPGHTVRSEFVKG-----GGIPDLIAIYQDASGNAKNVALSYASGVGGGRTGIIETTFKDETETDLFGEQAVLCGGTVELVKAGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_PSEE4 (Ketol-acid reductoisomerase OS=Pseudomonas entomophila (strain L48) GN=ilvC PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.613e-18
Identity = 68/217 (31.34%), Postives = 111/217 (51.15%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ +IG+GSQG AQA NL+DS       + V +GLRKGS + A+A A G       + D+   ++ +DLV++L  D  Q   Y++    ++PN                     P+ ++ VI + PK  G +VR  +V+G      GI    A++QD  G A NVAL ++  +G   T    TT + E ++D+FGE+  L G    +V++ F+  ++
Sbjct:   18 KVAIIGYGSQGHAQACNLKDS------GVDVTIGLRKGSATVAKAEAHGLK-----VTDVATAVAAADLVMILTPDEFQGQLYKQE---IEPNIKKGATLAFSHGFAIHYNQVVPRADLDVIMIAPKAPGHTVRSEFVKG-----GGIPDLIAIYQDASGNAKNVALSYASGVGGGRTGIIETTFKDETETDLFGEQAVLCGGTVELVKAGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_LACLA (Ketol-acid reductoisomerase OS=Lactococcus lactis subsp. lactis GN=ilvC PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.613e-18
Identity = 69/213 (32.39%), Postives = 106/213 (49.77%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIG-LDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFK 959
            QI VIG+GSQG A AQNLRDS         V +G+R G +SF +A+  GF        ++ E ++ +D++++L  D  Q   YE+    +KPN                 G +  P+++ V  V PK  G  VRR Y +     G G  + F  HQ+  G A  +A+ W+  +G        TT ++E + D+FGE+  L G +  +VE+ F+
Sbjct:   20 QIAVIGYGSQGHAHAQNLRDSGHN------VIIGVRHG-KSFDKAKEDGF-----ETFEVGEAVAKADVIMVLAPDELQQSIYEE---DIKPNLKAGSALGFAHGFNIHFGYIKVPEDVDVFMVAPKAPGHLVRRTYTE-----GFGTPALFVSHQNASGHAREIAMDWAKGIGCARVGIIETTFKEETEEDLFGEQAVLCGGLTALVEAGFE 212          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_HELP2 (Ketol-acid reductoisomerase OS=Helicobacter pylori (strain P12) GN=ilvC PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.613e-18
Identity = 70/218 (32.11%), Postives = 110/218 (50.46%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD-GRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            Q+G+IG+G+QG AQA NLRD      S + V++GL +GS S ++A+  GF      LG + E +  SD+++ L+ D    +  EK +   +K   I            Q +    PK +  I V PKG G ++R  Y++ K     G+    A+ Q+     A  VAL ++ A+G        T+ ++E +SD+FGE+  L G +  IV   F+  LK
Sbjct:   20 QVGIIGYGTQGEAQALNLRD------SKVRVRIGLYQGSLSVSKAKKEGFE----VLG-VKELVQQSDVIMALLPDELHKEVLEKEVIPFLKEGQIIGFAHGFSVHFNQVV---IPKGVGAILVAPKGPGSALREEYLKNK-----GLYHLIAIEQESSKNNAKAVALSYAKAMGGGRMGVLETSFKEECESDLFGEQAVLCGGLEAIVRMGFETLLK 218          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_ACIC5 (Ketol-acid reductoisomerase OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=ilvC PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.613e-18
Identity = 68/212 (32.08%), Postives = 108/212 (50.94%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG--SPFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFK 959
            ++ +IG+GSQG A A  L+DS  E      V+VGL   SRS  +A+ AG   E GT+ ++    + +D++++L  D AQA  YE+  S                   +   +  PK++ V  V PK  G  VR ++V+G      G     AVHQD  G+A  +AL ++ A+G        TT ++E ++D+FGE+  L G    +V++ F+
Sbjct:   19 KVAIIGYGSQGHAHALGLKDSGVE------VRVGLAPNSRSIEKAKKAGL--ETGTVAEV---AAWADVIMILAPDTAQAAIYEE--SIAPHLKAGKTLMFAHGFNIRYDAIQPPKDVDVSLVAPKAPGHRVREVFVEG-----GGTPGLVAVHQDASGQALALALAYAKAIGCTRAGVLETTFKEETETDLFGEQAVLCGGTAALVKAGFE 212          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_SYNY3 (Ketol-acid reductoisomerase OS=Synechocystis sp. (strain PCC 6803) GN=ilvC PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 2.106e-18
Identity = 65/211 (30.81%), Postives = 107/211 (50.71%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLF 956
            + +IG+GSQG A A NL+D      S + V VGL  GS+S A+A  AG       +  + E    +DL+++L+ D  Q   YE +I   +   ++            Q +    P ++ V+   PKG G  VRR Y QG+     G+ + FAV+QD  G+A + A+ ++  +G        TT  +E ++D+FGE+  L G +  ++++ F
Sbjct:   20 VAIIGYGSQGHAHALNLKD------SGVNVVVGLYSGSKSVAKAEGAGL-----KVLSVAEAAKAADLIMILLPDEVQKTVYEAEIAPNLVAGNVLLFAHGFNINFAQIVP---PADVDVVMAAPKGPGHLVRRTYEQGQ-----GVPALFAVYQDASGQARDYAMAYAKGIGGTRAGILETTFREETETDLFGEQVVLCGGLTALIKAGF 211          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_METS5 (Ketol-acid reductoisomerase OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=ilvC PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.106e-18
Identity = 69/216 (31.94%), Postives = 109/216 (50.46%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFA--TTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            +I V+G+GSQG A A NLRDS       + V VGL +  +S+ +A+A GFT +        + +  +D+V+ L+ D AQ   Y +         +            + I  + P N+ V  V PKG GP VR  YV+     G G+    AVHQ+  G+A   AL  + ALG     A  TT ++E ++D+ GE+  L+G V  ++++ F+  ++
Sbjct:   22 KIAVLGYGSQGRAWALNLRDS------GLQVTVGLEREGKSWEQAKADGFTPKKTE-----DAVKDADVVIFLVPDMAQRLVYRERVQPYLREGMDLVFAHGFNIHYRLI--EPPSNVDVYMVAPKGPGPIVRDFYVK-----GGGVPVLVAVHQNHSGKALEKALAIAKALGGTRAGAIETTFKEETETDLIGEQTILVGGVMELMKAAFETLVE 219          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_LACLS (Ketol-acid reductoisomerase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=ilvC PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.106e-18
Identity = 74/244 (30.33%), Postives = 121/244 (49.59%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIG-LDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLKRERMRIWLTEYPGRANKELIQNLLNQG 1052
            +I VIG+GSQG A AQNLRDS      D++  +G+R+G +SF  A+  GF        ++ E ++ +D++++L  D  Q   YE+    +KPN                 G ++ P+++ V  V PK  G  VRR + +     G G  + F  HQ+  G A  +A+ W+  +G        TT ++E + D+FGE+  L G +  +VE+ F+  L   R    L  +      +LI +L+ +G
Sbjct:   20 KIAVIGYGSQGHAHAQNLRDS----GHDVI--IGVRQG-KSFDRAKEDGF-----ETFEVGEAVAKADVIMVLAPDELQQSIYEE---DIKPNLKSGSALGFAHGFNIHFGYIEVPEDVDVFMVAPKAPGHLVRRTFTE-----GFGTPALFVSHQNATGHAREIAMDWAKGIGCARVGIIETTFKEETEEDLFGEQAVLCGGLTALVEAGFET-LTEARYAGELAYFEVLHEMKLIVDLMYEG 242          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_LACLM (Ketol-acid reductoisomerase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=ilvC PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.106e-18
Identity = 67/213 (31.46%), Postives = 110/213 (51.64%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIG-LDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFK 959
            +I VIG+GSQG A AQNLRDS      D++  +G+R+G +SF +A+  GF        ++ E ++ +D++++L  D  Q   YE+    +KPN                 G ++ P+++ V  V PK  G  VRR + +     G G  + F  HQ+  G A  +A+ W+  +G        TT ++E + D+FGE+  L G +  +VE+ F+
Sbjct:   20 KIAVIGYGSQGHAHAQNLRDS----GHDVI--IGVRQG-KSFDKAKEDGF-----ETFEVGEAVAKADVIMVLAPDELQQSIYEE---DIKPNLKAGSALGFAHGFNIHFGYIEVPEDVDVFMVAPKAPGHLVRRTFTE-----GFGTPALFVSHQNATGHAREIAMDWAKGIGCARVGIIETTFKEETEEDLFGEQAVLCGGLTALVEAGFE 212          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_BACCN (Ketol-acid reductoisomerase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=ilvC PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.106e-18
Identity = 67/213 (31.46%), Postives = 116/213 (54.46%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFK 959
            ++ ++G+GSQG A AQNLRD      ++  V VGLRKG +S+ +A+  GF     ++  + E  + +D+V++L+ D  Q + Y+ +I S ++  +             Q   +  P+++ V  V PKG G  VRR + +     G  + + FAV+QD  G AT  AL ++  +G+       TT ++E ++D+FGE+  L G V  +V++ F+
Sbjct:   19 KVAIVGYGSQGHAHAQNLRD------NNFDVVVGLRKG-KSWEKAKEDGF-----SVYSVAEAAAMADVVMVLLPDELQPEVYQAEIESNLQSGNALVFAHGFNVHFNQ---VTPPEDVDVFLVAPKGPGHLVRRTFTE-----GGAVPALFAVYQDATGTATEKALSYADGIGATRAGVLETTFKEETETDLFGEQAVLCGGVTALVKAGFE 211          
The following BLAST results are available for this feature:
BLAST of DY262550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ILVC_PSEP11.613e-1831.80Ketol-acid reductoisomerase OS=Pseudomonas putida ... [more]
ILVC_PSEE41.613e-1831.34Ketol-acid reductoisomerase OS=Pseudomonas entomop... [more]
ILVC_LACLA1.613e-1832.39Ketol-acid reductoisomerase OS=Lactococcus lactis ... [more]
ILVC_HELP21.613e-1832.11Ketol-acid reductoisomerase OS=Helicobacter pylori... [more]
ILVC_ACIC51.613e-1832.08Ketol-acid reductoisomerase OS=Acidobacterium caps... [more]
ILVC_SYNY32.106e-1830.81Ketol-acid reductoisomerase OS=Synechocystis sp. (... [more]
ILVC_METS52.106e-1831.94Ketol-acid reductoisomerase OS=Metallosphaera sedu... [more]
ILVC_LACLS2.106e-1830.33Ketol-acid reductoisomerase OS=Lactococcus lactis ... [more]
ILVC_LACLM2.106e-1831.46Ketol-acid reductoisomerase OS=Lactococcus lactis ... [more]
ILVC_BACCN2.106e-1831.46Ketol-acid reductoisomerase OS=Bacillus cereus sub... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA100BB09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262550 ID=DY262550; Name=DY262550; organism=Citrus clementina; type=EST; length=1290bp
CGGGTACTTTACCACTTAGCCCGTCGATCCCCAAATTGAGTCCATCGCCG
TCGTCCGAAACCCTAAAAGGAGCACTCAAGCATCTCAATCTAGCGTTTTT
CTCATCCACCGCGAAGTCCTTGAGAGCTCTCAAAACTACCAGAGGCAGGG
GCTCAGCTCTCGGCGCTCGGATGGCGTCCGAGACAGCTCTCAGGACACCT
TTCTTGCTGGATTTTGAGACATCCGTCTTTAAGAAGGACGCGATATCACT
GGCTGACCGCGATGAGTTCATTGTGAGAGGAGGAAGGGATTTGTTTAAGT
TGCTGCCGGACGCATTCAACGGGATTAACCAGATTGGGGTGATTGGCTGG
GGTTCCCAGGGACCTGCCCAAGCTCAGAATTTGAGGGATTCCCTTGCTGA
AGCTAAATCTGATATTGTTGTCAAGGTTGGGCTTAGGAAGGGCTCTCGTT
CTTTTGCTGAAGCTCGTGCTGCTGGTTTTACTGAAGAGAATGGAACTTTG
GGGGATATATATGAAACTATTTCAGGCAGTGATCTTGTGTTATTGTTGAT
TTCTGATGCTGCTCAGGCAGATAATTATGAGAAGATATTCTCTTGCATGA
AACCAAACAGCATCCTTGGACTTTCCCATGGGTTTCTTCTTGGGCATTTG
CAGTCAATAGGACTTGATTTCCCAAAGAATATCAGTGTGATTGCTGTGTG
TCCCAAGGGAATGGGTCCATCTGTGAGGAGACTCTATGTTCAAGGCAAAG
AGATTAATGGTGCTGGAATTAATTCCAGTTTTGCTGTCCACCAGGATGTT
GATGGAAGAGCTACCAATGTCGCCCTAGGATGGTCAGTTGCCCTTGGTTC
TCCTTTCACATTTGCCACCACATTAGAACAGGAGTACAAGAGTGACATCT
TTGGGGAGCGTGGCTTTCTACTTGGTGCTGTTCATGGAATTGTGGAATCC
TTGTTTAAAAGGTTCCTGAAAAGGGAAAGGATGAGGATCTGGCTTACAGA
ATACCCTGGAAGGGCAAACAAGGAATTAATCCAAAATCTTCTCAATCAGG
GGTATGTTGGCGGTTTAAAATTCCTTCCCTGAAAAAAAAAAAAGGGAATT
TGAAAAAGTTTAATAGGCCTCCAATTAACCCTGGCAGGAAAATTTAAAAA
AGGGGCCTAAAAAAATGGGGGGGCGGGGGGGGGAAAACCCCACGGTTGGT
TTGGGGGGGGGGCCGGGTTTTTTATAAAAAAGAAGGGTTTCCCACCTCTT
TTCCCCCTGGGAAAAAAAAATAAGAATAATAACCCCCGCG
back to top