DY262550

Overview
NameDY262550
Unique NameDY262550
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1290
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC1_BACHK (Ketol-acid reductoisomerase 1 OS=Bacillus thuringiensis subsp. konkukian GN=ilvC1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.106e-18
Identity = 70/213 (32.86%), Postives = 113/213 (53.05%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFK 959
            ++ +IG+GSQG A AQNLRD      +   V VGLRKG +S+ +A+  GF     ++  + E    +D+V++L+ D  Q + YE +I   ++  +             Q   +  P N+ V  V PKG G  VRR +V+     G  + + FAV+QD  G AT  AL ++  +G+       TT ++E ++D+FGE+  L G V  +V++ F+
Sbjct:   19 KVAIIGYGSQGHAHAQNLRD------NGFDVVVGLRKG-KSWDKAKEDGF-----SVYTVAEAAKKADVVMILLPDELQPEVYEAEIAPNLQAGNSLVFAHGFNVHFDQ---VKPPVNVDVFLVAPKGPGHLVRRTFVE-----GGAVPALFAVYQDATGVATEKALSYADGIGATRAGVLETTFKEETETDLFGEQAVLCGGVTALVKAGFE 211          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_CAMJ8 (Ketol-acid reductoisomerase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=ilvC PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.751e-18
Identity = 70/218 (32.11%), Postives = 110/218 (50.46%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSC-MKPNSIXXXXXXXXXXXXQSIG-LDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ +IG+GSQG A A NLRD      + + V +GLR+GS S  +A+ AGF      +  + E    +D+V++L  D  QAD    IF+  +KPN                 G +  PK I VI + PK  G +VR  +       G G     A+HQD    A N+AL ++ A+G   T    TT + E ++D+FGE+  L G +  ++++ F+  ++
Sbjct:   20 KVAIIGFGSQGHAHAMNLRD------NGVNVTIGLREGSVSAVKAKNAGF-----EVMSVSEASKTADVVMILAPDEIQAD----IFNIEIKPNLSEGKAIAFAHGFNIHYGQIVAPKGIDVIMIAPKAPGHTVRNEFTL-----GGGTPCLIAIHQDESKNAKNLALSYASAIGGGRTGIIETTFKAETETDLFGEQAVLCGGLSALIQAGFETLVE 217          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_ACIF5 (Ketol-acid reductoisomerase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=ilvC PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.751e-18
Identity = 68/217 (31.34%), Postives = 105/217 (48.39%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ +IG+GSQG A A NL+DS       + V VGLRK S S+ +A  AG   +     ++   ++ +D+V++L  D  Q   Y    +   PN                 G   P+ ++    V PKG G  VR  Y QG      G+ S  AVHQD  G ATN+AL ++ A G        T+  +E ++D+FGE+  L G    +V++ F+  ++
Sbjct:   18 KVAIIGYGSQGHAHALNLKDS------GVSVVVGLRKDSSSWEKAGKAGLEVK-----EVAAAVAAADVVMILTPDEGQGALYRDEIA---PNIRQGAALVFAHGFNIHFGQIHPRADLDCFLVAPKGPGHLVRSTYTQG-----GGVPSLIAVHQDASGNATNIALSYAKANGGTRAGVIETSFREETETDLFGEQAVLCGGATALVQAGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_ACIF2 (Ketol-acid reductoisomerase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=ilvC PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.751e-18
Identity = 68/217 (31.34%), Postives = 105/217 (48.39%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ +IG+GSQG A A NL+DS       + V VGLRK S S+ +A  AG   +     ++   ++ +D+V++L  D  Q   Y    +   PN                 G   P+ ++    V PKG G  VR  Y QG      G+ S  AVHQD  G ATN+AL ++ A G        T+  +E ++D+FGE+  L G    +V++ F+  ++
Sbjct:   18 KVAIIGYGSQGHAHALNLKDS------GVSVVVGLRKDSSSWEKAGKAGLEVK-----EVAAAVAAADVVMILTPDEGQGALYRDEIA---PNIRQGAALVFAHGFNIHFGQIHPRADLDCFLVAPKGPGHLVRSTYTQG-----GGVPSLIAVHQDASGNATNIALSYAKANGGTRAGVIETSFREETETDLFGEQAVLCGGATALVQAGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_XANOR (Ketol-acid reductoisomerase OS=Xanthomonas oryzae pv. oryzae GN=ilvC PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 3.593e-18
Identity = 72/213 (33.80%), Postives = 106/213 (49.77%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFK 959
            +I +IG+GSQG A A NLRD      S   V VGLR G  + ++A+A GFT    +     E +  +DLV +L  D  Q   YE + +   PN                  +  P+ ++ V+ V PKG G  VRR Y    EI G G+   +AV+QD  G+A   AL ++  LG        TT ++E ++D+FGE+  L G    +V++ F+
Sbjct:    8 KIAIIGYGSQGRAHALNLRD------SGFDVTVGLRPGGPTESKAQADGFTVVAPS-----EAVKSADLVAILTPDMVQKKLYEDVIA---PNMKQGACLLFAHGLNVHFDMITPRADLDVVLVAPKGPGALVRREY----EI-GRGVPCIYAVYQDTSGKAEQFALTYAGGLGGARANIIKTTFKEETETDLFGEQAVLCGGASSLVQAGFE 201          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_XANOP (Ketol-acid reductoisomerase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=ilvC PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.593e-18
Identity = 72/213 (33.80%), Postives = 106/213 (49.77%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFK 959
            +I +IG+GSQG A A NLRD      S   V VGLR G  + ++A+A GFT    +     E +  +DLV +L  D  Q   YE + +   PN                  +  P+ ++ V+ V PKG G  VRR Y    EI G G+   +AV+QD  G+A   AL ++  LG        TT ++E ++D+FGE+  L G    +V++ F+
Sbjct:    8 KIAIIGYGSQGRAHALNLRD------SGFDVTVGLRPGGPTESKAQADGFTVVAPS-----EAVKSADLVAILTPDMVQKKLYEDVIA---PNMKQGACLLFAHGLNVHFDMITPRADLDVVLVAPKGPGALVRREY----EI-GRGVPCIYAVYQDTSGKAEQFALTYAGGLGGARANIIKTTFKEETETDLFGEQAVLCGGASSLVQAGFE 201          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_XANOM (Ketol-acid reductoisomerase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=ilvC PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.593e-18
Identity = 72/213 (33.80%), Postives = 106/213 (49.77%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFK 959
            +I +IG+GSQG A A NLRD      S   V VGLR G  + ++A+A GFT    +     E +  +DLV +L  D  Q   YE + +   PN                  +  P+ ++ V+ V PKG G  VRR Y    EI G G+   +AV+QD  G+A   AL ++  LG        TT ++E ++D+FGE+  L G    +V++ F+
Sbjct:    8 KIAIIGYGSQGRAHALNLRD------SGFDVTVGLRPGGPTESKAQADGFTVVAPS-----EAVKSADLVAILTPDMVQKKLYEDVIA---PNMKQGACLLFAHGLNVHFDMITPRADLDVVLVAPKGPGALVRREY----EI-GRGVPCIYAVYQDTSGKAEQFALTYAGGLGGARANIIKTTFKEETETDLFGEQAVLCGGASSLVQAGFE 201          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_THEP3 (Ketol-acid reductoisomerase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=ilvC PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.593e-18
Identity = 69/217 (31.80%), Postives = 110/217 (50.69%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            +I +IG+GSQG A A NL+DS       + V VGL +GS+S   A   G       +  + E    +D++++LI D  QA  Y E I   +                 Q +    PKN+ V  V PKG G  VRR+Y +GK     G+ +  AV+QD  G+A ++AL ++  +G        TT ++E ++D+FGE+  L G V  ++++ F+  ++
Sbjct:   19 KIAIIGFGSQGHAHALNLKDS------GLDVVVGLYEGSKSKERAEKEGLR-----VYTVEEAAKVADIIMILIPDEKQAKVYKESIEKNLTEGKALAFAHGFNIHFKQIVP---PKNVDVFMVAPKGPGHLVRRVYQEGK-----GVPNLVAVYQDYTGKAFDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGVTELMKAGFETLVE 216          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_OCEIH (Ketol-acid reductoisomerase OS=Oceanobacillus iheyensis GN=ilvC PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.593e-18
Identity = 71/213 (33.33%), Postives = 110/213 (51.64%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFK 959
            +I VIG+GSQG A A NLRDS  +      V VGLR G +S  +A   GF      +  + E  S +D+V++L+ D  Q   YE+ I   ++  +             Q +    P N+ V  V PKG G  VRR + +G     AG+ + + VHQD  G A +VAL +S  +G+       T+ ++E ++D+FGE+  L G V  ++++ F+
Sbjct:   19 KIAVIGYGSQGHAHAMNLRDSGYD------VVVGLRPG-KSQEKAEEDGFN-----VLSVAEASSQADVVMVLLPDEMQPKVYEESIKDNLEQGNALVFAHGFNIHFTQVVP---PANVDVFLVAPKGPGHLVRRTFEEG-----AGVPALYGVHQDYTGEAKDVALAYSKGIGAARAGVLETSFQEETETDLFGEQAVLCGGVTSLIKAGFE 211          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_DESAD (Ketol-acid reductoisomerase OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=ilvC PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.593e-18
Identity = 64/216 (29.63%), Postives = 109/216 (50.46%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            + +IG+GSQG A AQNLRD      S + V VG R G  ++  A+  GF   +       E  + +DL+++L+ D  QA+ Y+  I   +K   +            Q   +  P ++ VI   PKG G  VRR Y +     G  + +  AV QD  G+A ++AL ++  +G+  +    TT  +E ++D+FGE+  L G +  ++++ F+  ++
Sbjct:   19 VAIIGYGSQGHAHAQNLRD------SGVKVVVGQRPGGANYELAKEHGFEPVSAA-----EAAAQADLIMILLPDQVQAEVYKNDIAPNLKSGDVLAFGHGFNIHFEQ---IAPPADVDVIMAAPKGPGHLVRRTYTE-----GGAVPAIIAVDQDASGKAFDIALAYAKGIGATRSGVLQTTFREETETDLFGEQAVLCGGLSELIKAGFETLVE 215          
The following BLAST results are available for this feature:
BLAST of DY262550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ILVC1_BACHK2.106e-1832.86Ketol-acid reductoisomerase 1 OS=Bacillus thuringi... [more]
ILVC_CAMJ82.751e-1832.11Ketol-acid reductoisomerase OS=Campylobacter jejun... [more]
ILVC_ACIF52.751e-1831.34Ketol-acid reductoisomerase OS=Acidithiobacillus f... [more]
ILVC_ACIF22.751e-1831.34Ketol-acid reductoisomerase OS=Acidithiobacillus f... [more]
ILVC_XANOR3.593e-1833.80Ketol-acid reductoisomerase OS=Xanthomonas oryzae ... [more]
ILVC_XANOP3.593e-1833.80Ketol-acid reductoisomerase OS=Xanthomonas oryzae ... [more]
ILVC_XANOM3.593e-1833.80Ketol-acid reductoisomerase OS=Xanthomonas oryzae ... [more]
ILVC_THEP33.593e-1831.80Ketol-acid reductoisomerase OS=Thermoanaerobacter ... [more]
ILVC_OCEIH3.593e-1833.33Ketol-acid reductoisomerase OS=Oceanobacillus ihey... [more]
ILVC_DESAD3.593e-1829.63Ketol-acid reductoisomerase OS=Desulfovibrio salex... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100BB09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262550 ID=DY262550; Name=DY262550; organism=Citrus clementina; type=EST; length=1290bp
CGGGTACTTTACCACTTAGCCCGTCGATCCCCAAATTGAGTCCATCGCCG
TCGTCCGAAACCCTAAAAGGAGCACTCAAGCATCTCAATCTAGCGTTTTT
CTCATCCACCGCGAAGTCCTTGAGAGCTCTCAAAACTACCAGAGGCAGGG
GCTCAGCTCTCGGCGCTCGGATGGCGTCCGAGACAGCTCTCAGGACACCT
TTCTTGCTGGATTTTGAGACATCCGTCTTTAAGAAGGACGCGATATCACT
GGCTGACCGCGATGAGTTCATTGTGAGAGGAGGAAGGGATTTGTTTAAGT
TGCTGCCGGACGCATTCAACGGGATTAACCAGATTGGGGTGATTGGCTGG
GGTTCCCAGGGACCTGCCCAAGCTCAGAATTTGAGGGATTCCCTTGCTGA
AGCTAAATCTGATATTGTTGTCAAGGTTGGGCTTAGGAAGGGCTCTCGTT
CTTTTGCTGAAGCTCGTGCTGCTGGTTTTACTGAAGAGAATGGAACTTTG
GGGGATATATATGAAACTATTTCAGGCAGTGATCTTGTGTTATTGTTGAT
TTCTGATGCTGCTCAGGCAGATAATTATGAGAAGATATTCTCTTGCATGA
AACCAAACAGCATCCTTGGACTTTCCCATGGGTTTCTTCTTGGGCATTTG
CAGTCAATAGGACTTGATTTCCCAAAGAATATCAGTGTGATTGCTGTGTG
TCCCAAGGGAATGGGTCCATCTGTGAGGAGACTCTATGTTCAAGGCAAAG
AGATTAATGGTGCTGGAATTAATTCCAGTTTTGCTGTCCACCAGGATGTT
GATGGAAGAGCTACCAATGTCGCCCTAGGATGGTCAGTTGCCCTTGGTTC
TCCTTTCACATTTGCCACCACATTAGAACAGGAGTACAAGAGTGACATCT
TTGGGGAGCGTGGCTTTCTACTTGGTGCTGTTCATGGAATTGTGGAATCC
TTGTTTAAAAGGTTCCTGAAAAGGGAAAGGATGAGGATCTGGCTTACAGA
ATACCCTGGAAGGGCAAACAAGGAATTAATCCAAAATCTTCTCAATCAGG
GGTATGTTGGCGGTTTAAAATTCCTTCCCTGAAAAAAAAAAAAGGGAATT
TGAAAAAGTTTAATAGGCCTCCAATTAACCCTGGCAGGAAAATTTAAAAA
AGGGGCCTAAAAAAATGGGGGGGCGGGGGGGGGAAAACCCCACGGTTGGT
TTGGGGGGGGGGCCGGGTTTTTTATAAAAAAGAAGGGTTTCCCACCTCTT
TTCCCCCTGGGAAAAAAAAATAAGAATAATAACCCCCGCG
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