DY262550

Overview
NameDY262550
Unique NameDY262550
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1290
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_CLOTH (Ketol-acid reductoisomerase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=ilvC PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.010e-20
Identity = 80/247 (32.39%), Postives = 124/247 (50.20%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDF-----PKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLKRERMRIWLTEYPGRANKELIQNLLNQG 1052
            + +IG+GSQG A AQNLRD      S I V VGL +GS+S  +A   G   EN  +         +D+V++L+ D  Q D YE   + +KPN                  + F     P  + VI + PKG G +VR  YV+GK     G+ S  AV+QD  G+A + AL ++  +G+       TT ++E ++D+FGE+  L G V  ++++ F+  L     +  +  +      +LI +L+NQG
Sbjct:   20 VAIIGYGSQGHAHAQNLRD------SGIDVVVGLPEGSKSRQKAVEDGLRVENTDV-----AAKMADVVMMLVPDQLQQDIYE---NSIKPN----LEEGNVLAFAHGFAIHFKTIVPPPEVDVIMIAPKGPGHTVRSQYVEGK-----GVPSLIAVYQDASGKAKDYALAYAAGIGAGRAGILETTFKEETETDLFGEQAVLCGGVTELMKAGFET-LVEAGYQPEIAYFECIHEMKLIVDLINQG 242          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_DICT6 (Ketol-acid reductoisomerase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=ilvC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.319e-20
Identity = 77/243 (31.69%), Postives = 120/243 (49.38%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLKRERMRIWLTEYPGRANKELIQNLLNQG 1052
            I +IG+GSQG A A NL+DS       + V V +R    S+  A   G T E      I + +  SD+++ LI D  Q   Y EK+   ++PN              Q +    P  + V  V PKG GP VR LYV+GK     G+ + FAV+QD   +  ++AL ++  +G+       TT ++E ++D+FGE+  L G V  ++++ F+  L     +  +  Y      +LI +L+NQG
Sbjct:   20 ITIIGYGSQGRAHALNLKDS------GMKVIVAVRPNGESWKRALEEGMTVEK-----IEDAVQKSDIIMFLIPDTEQPAIYKEKVLPYLRPNQALGFAHGFNIHFSQIVP---PPFVDVFMVAPKGPGPLVRDLYVEGK-----GVPALFAVYQDYTQKCRDIALAYAKGIGATRAGVLETTFKEETETDLFGEQVVLCGGVTALIKAGFET-LVEAGYQPEVAYYECLHEMKLIVDLINQG 242          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_DESVV (Ketol-acid reductoisomerase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=ilvC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.319e-20
Identity = 70/216 (32.41%), Postives = 110/216 (50.93%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIG-LDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            + +IG+GSQG A AQNLRD      S I V VG R G  ++A A+  GF   +       E  + +DL+++L+ D  QA  YE   + +KPN                 G ++ PK++ V  + PKG G  VRR Y +     G G+    AVHQD  G+A   AL ++  +G   +    TT  +E ++D+FGE+  L G +  ++++ F+  ++
Sbjct:   19 VAIIGYGSQGHAHAQNLRD------SGISVIVGQRPGGANYALAKEHGFEPVSAA-----EAAAKADLIMILLPDQVQAAVYE---AEIKPNLKAGDALLFAHGFNIHFGQIEPPKDVDVFMIAPKGPGHLVRRTYTE-----GGGVPCLVAVHQDATGKAMEKALAYAKGVGGSRSGVIETTFREETETDLFGEQAVLCGGLSSLIKAGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_DESVH (Ketol-acid reductoisomerase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=ilvC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.319e-20
Identity = 70/216 (32.41%), Postives = 110/216 (50.93%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIG-LDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            + +IG+GSQG A AQNLRD      S I V VG R G  ++A A+  GF   +       E  + +DL+++L+ D  QA  YE   + +KPN                 G ++ PK++ V  + PKG G  VRR Y +     G G+    AVHQD  G+A   AL ++  +G   +    TT  +E ++D+FGE+  L G +  ++++ F+  ++
Sbjct:   19 VAIIGYGSQGHAHAQNLRD------SGISVIVGQRPGGANYALAKEHGFEPVSAA-----EAAAKADLIMILLPDQVQAAVYE---AEIKPNLKAGDALLFAHGFNIHFGQIEPPKDVDVFMIAPKGPGHLVRRTYTE-----GGGVPCLVAVHQDATGKAMEKALAYAKGVGGSRSGVIETTFREETETDLFGEQAVLCGGLSSLIKAGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_CYAP4 (Ketol-acid reductoisomerase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ilvC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.319e-20
Identity = 69/212 (32.55%), Postives = 108/212 (50.94%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFK 959
            + ++G+GSQG A A NLRDS       + V VGL  GS+S   AR  G T     +  + E    +DL+++L+ D  Q   Y++ I   +KP  +            Q +    P ++ VI V PKG G  VRR Y QG+     G+   FAV+QD  G+A + A+ ++  +G        TT  +E ++D+FGE+  L G +  +++S F+
Sbjct:   20 VAIVGYGSQGHAHALNLRDS------GVKVVVGLYPGSKSAESARLEGLT-----VTSVAEAAEVADLIMILLPDEVQKTVYQQEILPHLKPGKVIAFAHGFNIHFAQVVP---PADVDVIMVAPKGPGHLVRRTYTQGE-----GVPCLFAVYQDASGQARDRAMAYAKGIGGTRAGILETTFREETETDLFGEQVVLCGGLTALIKSGFE 212          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_THESQ (Ketol-acid reductoisomerase OS=Thermotoga sp. (strain RQ2) GN=ilvC PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.723e-20
Identity = 70/213 (32.86%), Postives = 113/213 (53.05%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG--SPFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFK 959
            +I +IG+GSQG A A NL+DS       + V VGLR+GS+S+ +A   G T +      I E    +D++++LI D  Q + Y+K I   +    +            Q I    PKN+ V  + PK  G  VRR YV+G+     G+ +  AV+QD  G+A ++AL ++  +G        TT ++E ++D+FGE+  L G V  ++++ F+
Sbjct:   19 KIAIIGYGSQGHAHALNLKDS------GLNVVVGLREGSKSWKKAEEQGLTVKT-----IEEAAKEADIIMILIPDEHQPEIYKKYIEKHLTEGKMLMFAHGFNIHYHQIIP---PKNVDVTMIAPKSPGHIVRREYVEGR-----GVPALVAVYQDYTGKAKDIALAYAKGIGVTRAGVIETTFKEETETDLFGEQAVLCGGVTALIKAGFE 212          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_THEMA (Ketol-acid reductoisomerase OS=Thermotoga maritima GN=ilvC PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.723e-20
Identity = 70/213 (32.86%), Postives = 113/213 (53.05%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG--SPFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFK 959
            +I +IG+GSQG A A NL+DS       + V VGLR+GS+S+ +A   G T +      I E    +D++++LI D  Q + Y+K I   +    +            Q I    PKN+ V  + PK  G  VRR YV+G+     G+ +  AV+QD  G+A ++AL ++  +G        TT ++E ++D+FGE+  L G V  ++++ F+
Sbjct:   19 KIAIIGYGSQGHAHALNLKDS------GLNVVVGLREGSKSWKKAEEQGLTVKT-----IEEAAKEADIIMILIPDEHQPEIYKKYIEKHLTEGKMLMFAHGFNIHYHQIIP---PKNVDVTMIAPKSPGHIVRREYVEGR-----GVPALVAVYQDYTGKAKDIALAYAKGIGVTRAGVIETTFKEETETDLFGEQAVLCGGVTALIKAGFE 212          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_DEIRA (Ketol-acid reductoisomerase OS=Deinococcus radiodurans GN=ilvC PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 1.723e-20
Identity = 73/216 (33.80%), Postives = 110/216 (50.93%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIG-LDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG--SPFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            I +IG+GSQ  A AQNLRD      S   V VGLR+GS S A+A  AG       +  I +    +D+V+LLI D  Q   YEK    + P+                 G +  P ++ V  V PKG G  +RR+Y      +GAG+   FAV QD  G+A ++AL ++  +G        TT ++E ++D+FGE+  L G V  ++++ F+  ++
Sbjct:   21 IAIIGYGSQAHAHAQNLRD------SGFNVVVGLREGSSSKAKAEQAGL-----RVASIEDATKEADVVMLLIPDEQQPAVYEK---SIAPHLTAGKALAFGHGFNVHFGRIKPPADVDVFLVAPKGPGHMLRRVYT-----DGAGMPGIFAVQQDASGKARDIALAYARGIGCTKAGVLETTFKEETETDLFGEQSVLCGGVTHLIQAGFETLVE 217          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_THEP1 (Ketol-acid reductoisomerase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=ilvC PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.250e-20
Identity = 70/217 (32.26%), Postives = 115/217 (53.00%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG--SPFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            +I +IG+GSQG A A NL+DS       + V VGLR+GS+S+ +A   G T +      I E    +D++++LI D  Q + Y+K I   +    +            Q I    PKN+ V  + PK  G  VRR YV+G+     G+ +  AV+QD  G+A ++AL ++  +G        TT ++E ++D+FGE+  L G V  ++++ F+  ++
Sbjct:   19 KIAIIGYGSQGHAHALNLKDS------GLNVVVGLREGSKSWKKAEEQGLTVKA-----IEEAAKEADIIMMLIPDENQPEIYKKYIEKHLTEGKMLMFAHGFNIHYHQIIP---PKNVDVTMIAPKSPGHIVRREYVEGR-----GVPALVAVYQDYTGKAKDIALAYAKGIGVTRAGVIETTFKEETETDLFGEQAVLCGGVTALIKAGFETLVE 216          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_THENN (Ketol-acid reductoisomerase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=ilvC PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.939e-20
Identity = 70/217 (32.26%), Postives = 114/217 (52.53%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG--SPFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            +I +IG+GSQG A A NL+DS       + V VGLR+GS+S+ +A   G T +      I E    +D++++LI D  Q + Y+K I   +    +            Q I    PKN+ V  + PK  G  VRR YV+G+     G+ +  AV+QD  G+A  +AL ++  +G        TT ++E ++D+FGE+  L G V  ++++ F+  ++
Sbjct:   19 KIAIIGFGSQGHAHALNLKDS------GLNVIVGLREGSKSWKKAEEQGLTVKT-----IEEAAKEADIIMILIPDEHQPEVYKKYIEKHLTEGKMLMFAHGFNVHYHQIIP---PKNVDVTMIAPKSPGHIVRREYVEGR-----GVPALVAVYQDYTGKAKEIALAYAKGIGVTRAGVIETTFKEETETDLFGEQAVLCGGVTALIKAGFETLVE 216          
The following BLAST results are available for this feature:
BLAST of DY262550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ILVC_CLOTH1.010e-2032.39Ketol-acid reductoisomerase OS=Clostridium thermoc... [more]
ILVC_DICT61.319e-2031.69Ketol-acid reductoisomerase OS=Dictyoglomus thermo... [more]
ILVC_DESVV1.319e-2032.41Ketol-acid reductoisomerase OS=Desulfovibrio vulga... [more]
ILVC_DESVH1.319e-2032.41Ketol-acid reductoisomerase OS=Desulfovibrio vulga... [more]
ILVC_CYAP41.319e-2032.55Ketol-acid reductoisomerase OS=Cyanothece sp. (str... [more]
ILVC_THESQ1.723e-2032.86Ketol-acid reductoisomerase OS=Thermotoga sp. (str... [more]
ILVC_THEMA1.723e-2032.86Ketol-acid reductoisomerase OS=Thermotoga maritima... [more]
ILVC_DEIRA1.723e-2033.80Ketol-acid reductoisomerase OS=Deinococcus radiodu... [more]
ILVC_THEP12.250e-2032.26Ketol-acid reductoisomerase OS=Thermotoga petrophi... [more]
ILVC_THENN2.939e-2032.26Ketol-acid reductoisomerase OS=Thermotoga neapolit... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100BB09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262550 ID=DY262550; Name=DY262550; organism=Citrus clementina; type=EST; length=1290bp
CGGGTACTTTACCACTTAGCCCGTCGATCCCCAAATTGAGTCCATCGCCG
TCGTCCGAAACCCTAAAAGGAGCACTCAAGCATCTCAATCTAGCGTTTTT
CTCATCCACCGCGAAGTCCTTGAGAGCTCTCAAAACTACCAGAGGCAGGG
GCTCAGCTCTCGGCGCTCGGATGGCGTCCGAGACAGCTCTCAGGACACCT
TTCTTGCTGGATTTTGAGACATCCGTCTTTAAGAAGGACGCGATATCACT
GGCTGACCGCGATGAGTTCATTGTGAGAGGAGGAAGGGATTTGTTTAAGT
TGCTGCCGGACGCATTCAACGGGATTAACCAGATTGGGGTGATTGGCTGG
GGTTCCCAGGGACCTGCCCAAGCTCAGAATTTGAGGGATTCCCTTGCTGA
AGCTAAATCTGATATTGTTGTCAAGGTTGGGCTTAGGAAGGGCTCTCGTT
CTTTTGCTGAAGCTCGTGCTGCTGGTTTTACTGAAGAGAATGGAACTTTG
GGGGATATATATGAAACTATTTCAGGCAGTGATCTTGTGTTATTGTTGAT
TTCTGATGCTGCTCAGGCAGATAATTATGAGAAGATATTCTCTTGCATGA
AACCAAACAGCATCCTTGGACTTTCCCATGGGTTTCTTCTTGGGCATTTG
CAGTCAATAGGACTTGATTTCCCAAAGAATATCAGTGTGATTGCTGTGTG
TCCCAAGGGAATGGGTCCATCTGTGAGGAGACTCTATGTTCAAGGCAAAG
AGATTAATGGTGCTGGAATTAATTCCAGTTTTGCTGTCCACCAGGATGTT
GATGGAAGAGCTACCAATGTCGCCCTAGGATGGTCAGTTGCCCTTGGTTC
TCCTTTCACATTTGCCACCACATTAGAACAGGAGTACAAGAGTGACATCT
TTGGGGAGCGTGGCTTTCTACTTGGTGCTGTTCATGGAATTGTGGAATCC
TTGTTTAAAAGGTTCCTGAAAAGGGAAAGGATGAGGATCTGGCTTACAGA
ATACCCTGGAAGGGCAAACAAGGAATTAATCCAAAATCTTCTCAATCAGG
GGTATGTTGGCGGTTTAAAATTCCTTCCCTGAAAAAAAAAAAAGGGAATT
TGAAAAAGTTTAATAGGCCTCCAATTAACCCTGGCAGGAAAATTTAAAAA
AGGGGCCTAAAAAAATGGGGGGGCGGGGGGGGGAAAACCCCACGGTTGGT
TTGGGGGGGGGGCCGGGTTTTTTATAAAAAAGAAGGGTTTCCCACCTCTT
TTCCCCCTGGGAAAAAAAAATAAGAATAATAACCCCCGCG
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