DY262550

Overview
NameDY262550
Unique NameDY262550
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1290
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_MOOTA (Ketol-acid reductoisomerase OS=Moorella thermoacetica (strain ATCC 39073) GN=ilvC PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.939e-20
Identity = 69/217 (31.80%), Postives = 115/217 (53.00%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            +I V+G+GSQG +QAQNL+D      S + V VGLR  S+S A A+AAG   +      + E  + +D++ +L+ D  QA  Y E+I   +    +            Q +    P ++ VI V PKG G  VRR YV+G+     G+ +  A++QD  G+A  + L ++  +G+       TT ++E ++D+FGE+  L G    +V++ F+  ++
Sbjct:   19 KIAVMGYGSQGHSQAQNLKD------SGLDVVVGLRPESKSRAAAQAAGLEVKT-----VAEAAAEADIIQILLPDETQARVYREEIAPYLTGGKVLMFSHGFNIHFNQIVP---PADVDVIMVAPKGPGHLVRRTYVEGQ-----GVPALIAIYQDASGKAKEIGLAYAKGIGATRAGVIETTFKEETETDLFGEQAVLCGGTTALVKAGFETLVE 216          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_MAGSM (Ketol-acid reductoisomerase OS=Magnetococcus sp. (strain MC-1) GN=ilvC PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.939e-20
Identity = 66/217 (30.41%), Postives = 116/217 (53.46%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ +IG+GSQG A A NL+DS       + V VGLR GS S+ +A  +G       + ++ + + G+DLV++L+ D  QA  Y E+I   +K ++             Q   ++ P  + V  V PKG G  VR  Y++G      G+ S  A+HQ+  G+A ++AL ++ A G        T+ ++E ++D+FGE+  L G +  ++++ F+  ++
Sbjct:   18 KVAIIGYGSQGHAHALNLKDS------GVDVVVGLRAGSSSWMKAEGSGLQ-----VAEVADAVGGADLVMMLVPDEHQAKIYREQIAPNLKDDAALVFAHGFNIHYGQ---IEAPAGVDVFLVAPKGPGHLVRAEYLRG-----GGVPSLVAIHQNATGKALDLALSYASANGGGRAGIIETSFKEETETDLFGEQAVLCGGITALIQAGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_LEPBP (Ketol-acid reductoisomerase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=ilvC PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.939e-20
Identity = 75/214 (35.05%), Postives = 109/214 (50.93%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDF---PKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWS--VALGSPFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFK 959
            I VIG+GSQG AQAQN++D      S + V +GLR GS+S  EA+ AGF   N     + E    +D++ +L  D  QAD Y+   + ++PN               +I  D    PKN+ V  V PKG G  VRR+Y +     G G+    A++QD  G+A   AL  +  V  G      T+  +E ++D+FGE+  L G V  ++ S F+
Sbjct:   20 IAVIGYGSQGHAQAQNMKD------SGLKVIIGLRDGSKSVKEAKEAGFEVYN-----VAEASKKADIIQILAPDTIQADMYK---ADIEPN--LSEGKALVFSHGFNIHYDLITPPKNVDVYMVAPKGPGHLVRRVYTE-----GGGVPCLIAIYQDATGQAKARALAHASGVGGGRAGILETSFREETETDLFGEQAVLCGGVANLIMSGFE 212          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_LEPBA (Ketol-acid reductoisomerase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=ilvC PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.939e-20
Identity = 75/214 (35.05%), Postives = 109/214 (50.93%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDF---PKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWS--VALGSPFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFK 959
            I VIG+GSQG AQAQN++D      S + V +GLR GS+S  EA+ AGF   N     + E    +D++ +L  D  QAD Y+   + ++PN               +I  D    PKN+ V  V PKG G  VRR+Y +     G G+    A++QD  G+A   AL  +  V  G      T+  +E ++D+FGE+  L G V  ++ S F+
Sbjct:   20 IAVIGYGSQGHAQAQNMKD------SGLKVIIGLRDGSKSVKEAKEAGFEVYN-----VAEASKKADIIQILAPDTIQADMYK---ADIEPN--LSEGKALVFSHGFNIHYDLITPPKNVDVYMVAPKGPGHLVRRVYTE-----GGGVPCLIAIYQDATGQAKARALAHASGVGGGRAGILETSFREETETDLFGEQAVLCGGVANLIMSGFE 212          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_DESVM (Ketol-acid reductoisomerase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=ilvC PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.939e-20
Identity = 68/216 (31.48%), Postives = 110/216 (50.93%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            + +IG+GSQG A AQNLRD      S I V VG R G  ++  A+  GF         + E  + +DL+++L+ D  QA  YE +I   +KP               Q   ++ PK++ V  + PKG G  VRR Y +     G G+    A+HQD  G+A   AL ++  +G   +    TT ++E ++D+FGE+  L G +  ++++ F+  ++
Sbjct:   19 VAIIGYGSQGHAHAQNLRD------SGINVVVGQRPGGANYELAKEHGFAPL-----PVAEAAAKADLIMILLPDQVQAAIYEAEIKPNLKPGDALLFAHGFNIHFGQ---IEPPKDVDVFMIAPKGPGHLVRRTYTE-----GGGVPCLVAIHQDATGKAMEKALAYAKGVGGARSGVIETTFKEETETDLFGEQAVLCGGLSSLIKAGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_DESMR (Ketol-acid reductoisomerase OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=ilvC PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.939e-20
Identity = 67/212 (31.60%), Postives = 107/212 (50.47%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP--FTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFK 959
            + +IG+GSQG A AQNLRD      S + V +G R G  ++  A+  GFT  +       E  + +DL+++L+ D  Q   YEK +   +KP  +            Q +    P ++ V  V PKG G  VRR+Y +     GAG+    A+HQ+  G+A   AL ++  +G        TT ++E ++D+FGE+  L G    +V++ F+
Sbjct:   19 VAIIGYGSQGHAHAQNLRD------SGVKVVIGQRPGGPNWELAKENGFTPMSAA-----EAAAAADLIMILVPDQHQKAVYEKDVLPHLKPGKMLLFAHGFNIHFQQIVP---PADVDVAMVAPKGPGHLVRRVYTE-----GAGVPCLIAIHQNATGKAMETALAYAKGVGGTRGGVLTTTFKEETETDLFGEQAVLCGGAAELVKAGFE 211          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_STRMU (Ketol-acid reductoisomerase OS=Streptococcus mutans GN=ilvC PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.839e-20
Identity = 71/213 (33.33%), Postives = 112/213 (52.58%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIG-LDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFK 959
            +I VIG+GSQG A AQNLRDS      D++  +G+R G +SF +A+  GF        ++ E    +D++++L  D  Q D Y+   +   PN                 G +  P+++ V  V PKG G  VRR Y +     G G+ S +AV+Q+  G A N+AL W+  +GS       TT ++E + D+FGE+  L+G +  ++E+ F+
Sbjct:   20 KIAVIGYGSQGHAHAQNLRDS----GHDVI--IGVRHG-KSFDKAKEDGFDTY-----EVGEATKLADIIMVLAPDEIQKDIYKDEIA---PNLSAGKALGFAHGFNIHFGYIKAPEDVDVFMVAPKGPGHLVRRTYTE-----GFGVPSLYAVYQNPTGNAENIALDWAKGIGSARVGLLVTTFKEETEEDLFGEQAVLMGGLTHLIEAGFE 212          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_STAAW (Ketol-acid reductoisomerase OS=Staphylococcus aureus (strain MW2) GN=ilvC PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.839e-20
Identity = 70/224 (31.25%), Postives = 119/224 (53.12%), Query Frame = 3
Query:  309 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIG-LDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            DA  G  +I V+G+GSQG A AQNL+D+  +      V +G+R G RSF +A+  GF      +  + E +  +D++++L+ D  Q D Y+   + ++PN                 G +  P ++ V  V PKG G  VRR +V+     G+ + S F + QD  G+A N+AL ++  +G+       TT ++E ++D+FGE+  L G V  +++S F+  ++
Sbjct:   13 DALQG-KKIAVVGYGSQGHAHAQNLKDNGYD------VVIGIRPG-RSFDKAKEDGF-----DVFPVAEAVKQADVIMVLLPDEIQGDVYK---NEIEPNLEKHNALAFAHGFNIHFGVIQPPADVDVFLVAPKGPGHLVRRTFVE-----GSAVPSLFGIQQDASGQARNIALSYAKGIGATRAGVIETTFKEETETDLFGEQAVLCGGVSKLIQSGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_STAAS (Ketol-acid reductoisomerase OS=Staphylococcus aureus (strain MSSA476) GN=ilvC PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.839e-20
Identity = 70/224 (31.25%), Postives = 119/224 (53.12%), Query Frame = 3
Query:  309 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIG-LDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            DA  G  +I V+G+GSQG A AQNL+D+  +      V +G+R G RSF +A+  GF      +  + E +  +D++++L+ D  Q D Y+   + ++PN                 G +  P ++ V  V PKG G  VRR +V+     G+ + S F + QD  G+A N+AL ++  +G+       TT ++E ++D+FGE+  L G V  +++S F+  ++
Sbjct:   13 DALQG-KKIAVVGYGSQGHAHAQNLKDNGYD------VVIGIRPG-RSFDKAKEDGF-----DVFPVAEAVKQADVIMVLLPDEIQGDVYK---NEIEPNLEKHNALAFAHGFNIHFGVIQPPADVDVFLVAPKGPGHLVRRTFVE-----GSAVPSLFGIQQDASGQARNIALSYAKGIGATRAGVIETTFKEETETDLFGEQAVLCGGVSKLIQSGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_STAAR (Ketol-acid reductoisomerase OS=Staphylococcus aureus (strain MRSA252) GN=ilvC PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.839e-20
Identity = 70/224 (31.25%), Postives = 119/224 (53.12%), Query Frame = 3
Query:  309 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIG-LDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            DA  G  +I V+G+GSQG A AQNL+D+  +      V +G+R G RSF +A+  GF      +  + E +  +D++++L+ D  Q D Y+   + ++PN                 G +  P ++ V  V PKG G  VRR +V+     G+ + S F + QD  G+A N+AL ++  +G+       TT ++E ++D+FGE+  L G V  +++S F+  ++
Sbjct:   13 DALQG-KKIAVVGYGSQGHAHAQNLKDNGYD------VVIGIRPG-RSFDKAKEDGF-----DVFPVAEAVKQADVIMVLLPDEIQGDVYK---NEIEPNLEKHNALAFAHGFNIHFGVIQPPADVDVFLVAPKGPGHLVRRTFVE-----GSAVPSLFGIQQDASGQARNIALSYAKGIGATRAGVIETTFKEETETDLFGEQAVLCGGVSKLIQSGFETLVE 215          
The following BLAST results are available for this feature:
BLAST of DY262550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ILVC_MOOTA2.939e-2031.80Ketol-acid reductoisomerase OS=Moorella thermoacet... [more]
ILVC_MAGSM2.939e-2030.41Ketol-acid reductoisomerase OS=Magnetococcus sp. (... [more]
ILVC_LEPBP2.939e-2035.05Ketol-acid reductoisomerase OS=Leptospira biflexa ... [more]
ILVC_LEPBA2.939e-2035.05Ketol-acid reductoisomerase OS=Leptospira biflexa ... [more]
ILVC_DESVM2.939e-2031.48Ketol-acid reductoisomerase OS=Desulfovibrio vulga... [more]
ILVC_DESMR2.939e-2031.60Ketol-acid reductoisomerase OS=Desulfovibrio magne... [more]
ILVC_STRMU3.839e-2033.33Ketol-acid reductoisomerase OS=Streptococcus mutan... [more]
ILVC_STAAW3.839e-2031.25Ketol-acid reductoisomerase OS=Staphylococcus aure... [more]
ILVC_STAAS3.839e-2031.25Ketol-acid reductoisomerase OS=Staphylococcus aure... [more]
ILVC_STAAR3.839e-2031.25Ketol-acid reductoisomerase OS=Staphylococcus aure... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100BB09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262550 ID=DY262550; Name=DY262550; organism=Citrus clementina; type=EST; length=1290bp
CGGGTACTTTACCACTTAGCCCGTCGATCCCCAAATTGAGTCCATCGCCG
TCGTCCGAAACCCTAAAAGGAGCACTCAAGCATCTCAATCTAGCGTTTTT
CTCATCCACCGCGAAGTCCTTGAGAGCTCTCAAAACTACCAGAGGCAGGG
GCTCAGCTCTCGGCGCTCGGATGGCGTCCGAGACAGCTCTCAGGACACCT
TTCTTGCTGGATTTTGAGACATCCGTCTTTAAGAAGGACGCGATATCACT
GGCTGACCGCGATGAGTTCATTGTGAGAGGAGGAAGGGATTTGTTTAAGT
TGCTGCCGGACGCATTCAACGGGATTAACCAGATTGGGGTGATTGGCTGG
GGTTCCCAGGGACCTGCCCAAGCTCAGAATTTGAGGGATTCCCTTGCTGA
AGCTAAATCTGATATTGTTGTCAAGGTTGGGCTTAGGAAGGGCTCTCGTT
CTTTTGCTGAAGCTCGTGCTGCTGGTTTTACTGAAGAGAATGGAACTTTG
GGGGATATATATGAAACTATTTCAGGCAGTGATCTTGTGTTATTGTTGAT
TTCTGATGCTGCTCAGGCAGATAATTATGAGAAGATATTCTCTTGCATGA
AACCAAACAGCATCCTTGGACTTTCCCATGGGTTTCTTCTTGGGCATTTG
CAGTCAATAGGACTTGATTTCCCAAAGAATATCAGTGTGATTGCTGTGTG
TCCCAAGGGAATGGGTCCATCTGTGAGGAGACTCTATGTTCAAGGCAAAG
AGATTAATGGTGCTGGAATTAATTCCAGTTTTGCTGTCCACCAGGATGTT
GATGGAAGAGCTACCAATGTCGCCCTAGGATGGTCAGTTGCCCTTGGTTC
TCCTTTCACATTTGCCACCACATTAGAACAGGAGTACAAGAGTGACATCT
TTGGGGAGCGTGGCTTTCTACTTGGTGCTGTTCATGGAATTGTGGAATCC
TTGTTTAAAAGGTTCCTGAAAAGGGAAAGGATGAGGATCTGGCTTACAGA
ATACCCTGGAAGGGCAAACAAGGAATTAATCCAAAATCTTCTCAATCAGG
GGTATGTTGGCGGTTTAAAATTCCTTCCCTGAAAAAAAAAAAAGGGAATT
TGAAAAAGTTTAATAGGCCTCCAATTAACCCTGGCAGGAAAATTTAAAAA
AGGGGCCTAAAAAAATGGGGGGGCGGGGGGGGGAAAACCCCACGGTTGGT
TTGGGGGGGGGGCCGGGTTTTTTATAAAAAAGAAGGGTTTCCCACCTCTT
TTCCCCCTGGGAAAAAAAAATAAGAATAATAACCCCCGCG
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