DY262550

Overview
NameDY262550
Unique NameDY262550
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1290
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_SILPO (Ketol-acid reductoisomerase OS=Silicibacter pomeroyi GN=ilvC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.669e-15
Identity = 64/218 (29.36%), Postives = 106/218 (48.62%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ ++G+GSQG A A NLRDS A+      + V LR+GS S  +A   G      T+  I E  +  D+++  + D  QA+ Y+K +   ++P +                GL  PK  + VI + PKG G +VR     G+   G G+    AVH D  G+A  + L +  A+G   +    T   +E ++D+FGE+  L G +  ++   F+  ++
Sbjct:   18 KVAILGYGSQGHAHALNLRDSGAKN-----LVVALREGSASAKKAEGEGL-----TVMGIAEAAAWCDVIMFTMPDELQAETYKKYVHDNIRPGAAIAFAHGLNV----HFGLIEPKEGVDVIMMAPKGPGHTVR-----GEYTKGGGVPCLVAVHTDATGKALEIGLSYCSAIGGGRSGIIETNFREECETDLFGEQAVLCGGLVELIRCGFETLVE 216          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_RHOPB (Ketol-acid reductoisomerase OS=Rhodopseudomonas palustris (strain BisB18) GN=ilvC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.669e-15
Identity = 66/218 (30.28%), Postives = 109/218 (50.00%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ +IG+GSQG A A NL+DS  +      V + LRKGS S  +A AAGF      + ++ E    +D++++L  D  Q D Y E +   MK  +                 L  P+ ++ V+ V PKG G +VR  Y +     G G+    AVH+D  G A ++ L ++ A+G        TT  +E ++D+FGE+  L G +  +++  F+  ++
Sbjct:   18 KVVIIGYGSQGHAHALNLKDSGVKD-----VAIALRKGSTSAQKAEAAGF-----KVMEVAEAAKWADVMMMLTPDELQGDIYREHLHDNMKNGAALLFAHGLNV----HFNLIEPRADLDVVMVAPKGPGHTVRSEYQR-----GGGVPCLIAVHKDSSGNAHDLGLSYASAIGGGRAGIIETTFREECETDLFGEQVVLCGGLVELIKGGFETLVE 216          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_RALSO (Ketol-acid reductoisomerase OS=Ralstonia solanacearum GN=ilvC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.669e-15
Identity = 65/217 (29.95%), Postives = 106/217 (48.85%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            + +IG+GSQG A A NL DS       + V VGLRK   S+ +A  AG   +     ++ E +  +D+V++L+ D   AD Y+ ++   +K  +                G   P+ ++ VI V PK  G +VR  Y QG      G+    AVHQD  G A ++AL ++ A G        T   +E ++D+FGE+  L G    ++++ F+  ++
Sbjct:   19 VTIIGYGSQGHAHALNLNDS------GVKVTVGLRKNGASWNKAVNAGLQVK-----EVAEAVKDADVVMILLPDEQIADVYKNEVHGNIKQGAALAFAHGFNVHY----GAVIPRADLDVIMVAPKAPGHTVRGTYAQG-----GGVPHLIAVHQDKSGSARDIALSYATANGGGRAGIIETNFREETETDLFGEQAVLCGGTVELIKAGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_PSYCK (Ketol-acid reductoisomerase OS=Psychrobacter cryohalolentis (strain K5) GN=ilvC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.669e-15
Identity = 61/213 (28.64%), Postives = 105/213 (49.30%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFK 959
            ++ +IG+GSQG A A NL+D      S++ V VGLR  S S+ +A  AG       + ++ E +  +D++++L  D  Q + Y  +   ++PN                     P+ ++ VI V PK  G +VR  + +     G GI    A++QD  G+A  +AL ++  +G   +    TT + E ++D+FGE+  L G    +V+  F+
Sbjct:   18 KVAIIGYGSQGHAHALNLQD------SNVDVTVGLRANSGSWKKAENAGL-----KVAEVEEAVKAADIIMILTPDEFQKELYNDV---IEPNIKQGATLAFAHGFAIHYNQVIPRSDLDVIMVAPKAPGHTVRSEFAK-----GGGIPDLIAIYQDASGQAKQLALSYAAGVGGGRSGIIETTFKDETETDLFGEQAVLCGGAVELVKMGFE 211          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_METPP (Ketol-acid reductoisomerase OS=Methylibium petroleiphilum (strain PM1) GN=ilvC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.669e-15
Identity = 62/216 (28.70%), Postives = 103/216 (47.69%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL--GSPFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            + +IG+GSQG A AQNL D      S + V VGLR+G  S+ +   AG       + ++ + +  +D+V++L+ D   A  Y    + + PN                 G   P+ ++ V  V PK  G +VR  Y Q     G G+    AVH D  G+A ++AL ++ A   G      T   +E ++D+FGE+  L G    ++++ F+  ++
Sbjct:   19 VAIIGYGSQGHAHAQNLND------SGVKVTVGLRRGGASWNKVEKAGL-----KVAEVADAVKSADVVMILLPDEQIASVYS---AEVAPNIKQGASLAFAHGFNVHYGQVVPREDLDVWMVAPKAPGHTVRNTYTQ-----GGGVPHLIAVHADKTGKARDLALSYAAANGGGKAGIIETNFREETETDLFGEQAVLCGGTVELIKAGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_DIAST (Ketol-acid reductoisomerase OS=Diaphorobacter sp. (strain TPSY) GN=ilvC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.669e-15
Identity = 62/208 (29.81%), Postives = 104/208 (50.00%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL--GSPFTFATTLEQEYKSDIFGERGFLLGAVHGIVE 947
            + +IG+GSQG A AQNL D      S + V VGLRKG  S+ +   AG      T+ ++ + +  +D+V++L+ D   A+ Y+   + ++P+                     P+ ++ V  V PK  G +VR  Y Q     G G+    AVHQD  G+A ++AL +++A   G      T  ++E ++D+FGE+  L G    +++
Sbjct:   19 VAIIGYGSQGHAHAQNLND------SGVKVVVGLRKGGASWDKVGKAGL-----TVKEVNDAVKEADVVMILLPDEQIAEVYK---NNVEPHIKQGASLAFAHGFNVHYNQVVPRADLDVWMVAPKAPGHTVRNTYTQ-----GGGVPHLVAVHQDKSGKARDLALSYAMANGGGKAGIIETNFKEETETDLFGEQAVLCGGAVELIK 207          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_CLONN (Ketol-acid reductoisomerase OS=Clostridium novyi (strain NT) GN=ilvC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.669e-15
Identity = 64/216 (29.63%), Postives = 104/216 (48.15%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP--FTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            + +IG+GSQG A A NL+D      S + V VGL +GS+S   A + G    N       + +  +D++++LI D  QA  Y E +   +K                Q +    P+ + V  + PKG G  VRR YV+     G G+    AV QD  G+A   AL ++  +G        TT + E ++D+FGE+  L G +  ++++ F+  ++
Sbjct:   20 VAIIGYGSQGHAHALNLKD------SGVNVIVGLYEGSKSRKIAESQGLQVLN-----TKDAVKNADVIMMLIPDEKQAKVYMEDVCMNLKEGDALVFAHGFNIHFNQIVP---PEYVDVYMIAPKGPGHMVRREYVR-----GGGVPCLVAVAQDYTGKAKEYALAYTKGIGGTKGGVLETTFKDETETDLFGEQAVLCGGLTALMKAGFETLVE 216          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_BREBN (Ketol-acid reductoisomerase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=ilvC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.669e-15
Identity = 68/211 (32.23%), Postives = 103/211 (48.82%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG--SPFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLF 956
            I +IG+GSQG AQAQNLRD      S   V VGLR G +S+  A   GF      +  + E    +D+V +L+ D  QA  Y ++I   +K  +             Q +    P ++ VI   PK  G  VRR+Y +     G G+    A++QD  G A ++AL +S  +G        T+  +E ++D+FGE+  L G    +V++ F
Sbjct:   20 IAIIGYGSQGHAQAQNLRD------SGYKVVVGLRPG-KSWDVAAKDGF-----EVLTVAEATKRADVVQILMPDERQAQVYRDEIAPNLKSGAALCFSHGFNIHYAQIVP---PADVDVIMAAPKSPGHLVRRVYQE-----GFGVPGLIAIYQDATGNAKDLALAYSSGIGCTKAGVIETSFREETETDLFGEQAVLCGGASELVKAGF 210          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_ACISJ (Ketol-acid reductoisomerase OS=Acidovorax sp. (strain JS42) GN=ilvC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.669e-15
Identity = 62/208 (29.81%), Postives = 104/208 (50.00%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL--GSPFTFATTLEQEYKSDIFGERGFLLGAVHGIVE 947
            + +IG+GSQG A AQNL D      S + V VGLRKG  S+ +   AG      T+ ++ + +  +D+V++L+ D   A+ Y+   + ++P+                     P+ ++ V  V PK  G +VR  Y Q     G G+    AVHQD  G+A ++AL +++A   G      T  ++E ++D+FGE+  L G    +++
Sbjct:   19 VAIIGYGSQGHAHAQNLND------SGVKVVVGLRKGGASWDKVGKAGL-----TVKEVNDAVKEADVVMILLPDEQIAEVYK---NNVEPHIKQGASLAFAHGFNVHYNQVVPRADLDVWMVAPKAPGHTVRNTYTQ-----GGGVPHLVAVHQDKSGKARDLALSYAMANGGGKAGIIETNFKEETETDLFGEQAVLCGGAVELIK 207          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_SYNS3 (Ketol-acid reductoisomerase OS=Synechococcus sp. (strain CC9311) GN=ilvC PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.180e-15
Identity = 62/216 (28.70%), Postives = 109/216 (50.46%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPN-SIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            + +IG+GSQG A A NL+D      S + V VGL  GSRS  +A+A G       +  + +  + +D +++L+ D  Q + YEK  +   P+ S             +   +  P ++ V+ + PKG G +VR  Y      NG G+ + FA+ QD  G A  +A+ ++  +G        T  ++E ++D+FGE+  L G +  +V++ F+  ++
Sbjct:   20 VAIIGYGSQGHAHALNLKD------SGVNVVVGLYAGSRSAEKAKADGL-----EVLSVADASAKADWIMVLLPDEFQKEVYEKEIA---PHLSAGKVLSFAHGFNIRFELIKPPADVDVLMIAPKGPGHTVRWEYQ-----NGQGVPALFAIEQDASGNARGLAMAYAKGIGGTRAGILETNFKEETETDLFGEQAVLCGGLSELVKAGFETLVE 216          
The following BLAST results are available for this feature:
BLAST of DY262550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ILVC_SILPO1.669e-1529.36Ketol-acid reductoisomerase OS=Silicibacter pomero... [more]
ILVC_RHOPB1.669e-1530.28Ketol-acid reductoisomerase OS=Rhodopseudomonas pa... [more]
ILVC_RALSO1.669e-1529.95Ketol-acid reductoisomerase OS=Ralstonia solanacea... [more]
ILVC_PSYCK1.669e-1528.64Ketol-acid reductoisomerase OS=Psychrobacter cryoh... [more]
ILVC_METPP1.669e-1528.70Ketol-acid reductoisomerase OS=Methylibium petrole... [more]
ILVC_DIAST1.669e-1529.81Ketol-acid reductoisomerase OS=Diaphorobacter sp. ... [more]
ILVC_CLONN1.669e-1529.63Ketol-acid reductoisomerase OS=Clostridium novyi (... [more]
ILVC_BREBN1.669e-1532.23Ketol-acid reductoisomerase OS=Brevibacillus brevi... [more]
ILVC_ACISJ1.669e-1529.81Ketol-acid reductoisomerase OS=Acidovorax sp. (str... [more]
ILVC_SYNS32.180e-1528.70Ketol-acid reductoisomerase OS=Synechococcus sp. (... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100BB09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262550 ID=DY262550; Name=DY262550; organism=Citrus clementina; type=EST; length=1290bp
CGGGTACTTTACCACTTAGCCCGTCGATCCCCAAATTGAGTCCATCGCCG
TCGTCCGAAACCCTAAAAGGAGCACTCAAGCATCTCAATCTAGCGTTTTT
CTCATCCACCGCGAAGTCCTTGAGAGCTCTCAAAACTACCAGAGGCAGGG
GCTCAGCTCTCGGCGCTCGGATGGCGTCCGAGACAGCTCTCAGGACACCT
TTCTTGCTGGATTTTGAGACATCCGTCTTTAAGAAGGACGCGATATCACT
GGCTGACCGCGATGAGTTCATTGTGAGAGGAGGAAGGGATTTGTTTAAGT
TGCTGCCGGACGCATTCAACGGGATTAACCAGATTGGGGTGATTGGCTGG
GGTTCCCAGGGACCTGCCCAAGCTCAGAATTTGAGGGATTCCCTTGCTGA
AGCTAAATCTGATATTGTTGTCAAGGTTGGGCTTAGGAAGGGCTCTCGTT
CTTTTGCTGAAGCTCGTGCTGCTGGTTTTACTGAAGAGAATGGAACTTTG
GGGGATATATATGAAACTATTTCAGGCAGTGATCTTGTGTTATTGTTGAT
TTCTGATGCTGCTCAGGCAGATAATTATGAGAAGATATTCTCTTGCATGA
AACCAAACAGCATCCTTGGACTTTCCCATGGGTTTCTTCTTGGGCATTTG
CAGTCAATAGGACTTGATTTCCCAAAGAATATCAGTGTGATTGCTGTGTG
TCCCAAGGGAATGGGTCCATCTGTGAGGAGACTCTATGTTCAAGGCAAAG
AGATTAATGGTGCTGGAATTAATTCCAGTTTTGCTGTCCACCAGGATGTT
GATGGAAGAGCTACCAATGTCGCCCTAGGATGGTCAGTTGCCCTTGGTTC
TCCTTTCACATTTGCCACCACATTAGAACAGGAGTACAAGAGTGACATCT
TTGGGGAGCGTGGCTTTCTACTTGGTGCTGTTCATGGAATTGTGGAATCC
TTGTTTAAAAGGTTCCTGAAAAGGGAAAGGATGAGGATCTGGCTTACAGA
ATACCCTGGAAGGGCAAACAAGGAATTAATCCAAAATCTTCTCAATCAGG
GGTATGTTGGCGGTTTAAAATTCCTTCCCTGAAAAAAAAAAAAGGGAATT
TGAAAAAGTTTAATAGGCCTCCAATTAACCCTGGCAGGAAAATTTAAAAA
AGGGGCCTAAAAAAATGGGGGGGCGGGGGGGGGAAAACCCCACGGTTGGT
TTGGGGGGGGGGCCGGGTTTTTTATAAAAAAGAAGGGTTTCCCACCTCTT
TTCCCCCTGGGAAAAAAAAATAAGAATAATAACCCCCGCG
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