DY262550

Overview
NameDY262550
Unique NameDY262550
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1290
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_PROM5 (Ketol-acid reductoisomerase OS=Prochlorococcus marinus (strain MIT 9515) GN=ilvC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.847e-15
Identity = 66/216 (30.56%), Postives = 107/216 (49.54%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKN-ISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            I +IG+GSQG A A NL+D      S + V VGL KGS+S ++A   G       +  + E    +D +++L+ D  Q D Y K    ++PN                 GL  P + + V+ + PKG G +VR  Y      NG G+ + FAV QD    A ++A+ ++  +G        T  ++E ++D+FGE+  L G +  +V+S F+  ++
Sbjct:   20 IAIIGYGSQGHAHALNLKD------SGMDVIVGLYKGSKSESKAINDGL-----EVFTVSEACEKADWIMILLPDEFQKDVYIKE---IEPNLKEGKILSFAHGFNIRFGLIKPPSFVDVVMIAPKGPGHTVRWEYQ-----NGQGVPALFAVEQDYSSNARSLAMAYAKGIGGTRAGILETNFKEETETDLFGEQAVLCGGLSELVKSGFETLVE 216          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_NITWN (Ketol-acid reductoisomerase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=ilvC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.847e-15
Identity = 63/217 (29.03%), Postives = 106/217 (48.85%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ ++G+GSQG A A NL+DS  +      + + LRKGS S  +A  AGF      + ++ E     DLV++L  D  Q D Y E +   MK  +                 LD   ++ V+ + PKG G +VR  Y +     G G+    AV +D  G A ++ L ++ A+G        TT  +E ++D+FGE+  L G +  ++++ F+  ++
Sbjct:   18 KVVIVGYGSQGHAHALNLKDSGVKE-----IAIALRKGSASAKKAEGAGF-----KVMEVAEAAKWGDLVMMLTPDELQGDIYREHLHDNMKKGAALIFAHGLNVHFNL---LDPRADLDVLMIAPKGPGHTVRAEYQR-----GGGVPCLIAVAKDSSGNAHDLGLSYASAIGGGRAGIIETTFREECETDLFGEQAVLCGGLVELIKNGFETLVE 216          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_METM6 (Ketol-acid reductoisomerase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=ilvC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.847e-15
Identity = 63/216 (29.17%), Postives = 103/216 (47.69%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNV--ALGWSVALGSPFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            I VIG+GSQG AQ+ N++DS       + V VGLRK   S+  A+A G       +  I E    +D++ +LI D  QA+ Y+ +I  C+K                  +    PK ++V+ V PK  G  VRR Y +     G G+     +  D    A ++  A+   + L       TT ++E ++D+FGE+  L G V  ++++ F+  ++
Sbjct:   19 IAVIGYGSQGRAQSLNMKDS------GLNVVVGLRKNGASWENAKADGHN-----VMTIEEAAEKADIIHILIPDELQAEVYDAQIKPCLKEGKTLSFSHGFNIHYGFIVP---PKGVNVVLVAPKSPGKMVRRTYEE-----GFGVPGLICIEIDATNNAFDIVSAMAKGIGLSRAGVIQTTFKEETETDLFGEQAVLCGGVTELIKAGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_JANSC (Ketol-acid reductoisomerase OS=Jannaschia sp. (strain CCS1) GN=ilvC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.847e-15
Identity = 65/217 (29.95%), Postives = 103/217 (47.47%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ ++G+GSQG A A NLRDS A+      V V LR+GS S A+A   G       +  I E  +  D+++  + D  QA+ Y+K    +  N                 GL  PK  + VI + PKG G +VR     G+   G G+    AVHQ+   RA  + L +  A+G   +    T   +E ++D+FGE+  L G +  ++   F+  ++
Sbjct:   18 KVAILGYGSQGHAHALNLRDSGAKN-----VVVALREGSASAAKAEGEGL-----KVMGIAEAAAWCDVIMFTMPDELQAETYKKY---VHDNLKDGAAIAFAHGLNVHFGLIEPKPGVDVIMMAPKGPGHTVR-----GEYTKGGGVPCLVAVHQNASDRALEIGLSYCSAIGGGRSGIIETNFREECETDLFGEQAVLCGGLVELIRMGFETLVE 216          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_FRASN (Ketol-acid reductoisomerase OS=Frankia sp. (strain EAN1pec) GN=ilvC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.847e-15
Identity = 65/217 (29.95%), Postives = 103/217 (47.47%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFA--TTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ VIG+GSQG A A NLRDS       + V+VGL + S S A+A   G            E  + +D++++L  D      Y E I   + P                   ++ P  + V  V PKG G  VRR++V+GK     G+    AV  D  G+A ++AL ++  +G     A  TT  +E ++D+FGE+  L G    +V++ F+  ++
Sbjct:   19 KVAVIGFGSQGHAHALNLRDS------GVDVRVGLPETSTSRAKAEEQGLRVVTPA-----EASAEADIIMILTPDTTHRKIYAESIAPHLTPGKALAFGHGFNIRYGL---IEPPAGVDVFMVAPKGPGHLVRRVFVEGK-----GVPVLVAVEADATGKALDIALAYAKGIGGTRAGALRTTFTEETETDLFGEQAVLCGGASALVQAGFETLVE 216          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_CUPTR (Ketol-acid reductoisomerase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=ilvC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.847e-15
Identity = 63/217 (29.03%), Postives = 108/217 (49.77%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            + +IG+GSQG A A NL+D      S + V VGLRK   S+ +A  AG       + ++ E +  +D+V++L+ D   AD Y+ ++ + +K  +                G   P+ ++ VI + PK  G +VR  Y Q     G G+    AVHQ+  G A ++AL ++ A G        T   +E ++D+FGE+  L G    ++++ F+  ++
Sbjct:   19 VTIIGYGSQGHAHALNLKD------SGVNVTVGLRKSGASWNKAVNAGL-----QVKEVAEAVKNADVVMILLPDEQIADVYKNEVHANIKEGAALAFAHGFNV----HYGAVIPRADLDVIMIAPKAPGHTVRATYTQ-----GGGVPHLIAVHQNKSGAARDIALSYATANGGGRAGIIETNFREETETDLFGEQAVLCGGTVELIKAGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_BIFA0 (Ketol-acid reductoisomerase OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=ilvC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.847e-15
Identity = 70/213 (32.86%), Postives = 108/213 (50.70%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFP-KNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFA--TTLEQEYKSDIFGERGFLLGAVHGIVESLFK 959
            ++ +IG+GSQG A A NLRDS       + V VGLR  S+S   A+  G   ++     + E  + +D++++L  D  Q   +E   + ++PN                 G   P ++  V  V PKG G  VRR YV G+     G+    AV QD  G   ++AL ++ ALG+    A  TT ++E ++D+FGE+  LLG V+ +VE  F+
Sbjct:   20 KVAIIGYGSQGHAHALNLRDS------GVDVVVGLRPNSKSVEFAKEQGLEVKS-----VPEAAAEADVIMILAPDQYQKGIWE---NDIEPNIKPGAALAFAHGFNIHYGYIKPSEDHPVFMVAPKGPGHIVRREYVAGR-----GVPVVTAVEQDPRGDGWDLALAYAKALGALRAGAIKTTFKEETETDLFGEQNVLLGGVNKLVEMGFE 213          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_AGRRK (Ketol-acid reductoisomerase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=ilvC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.847e-15
Identity = 63/217 (29.03%), Postives = 107/217 (49.31%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ +IG+GSQG A A NL+DS A+      V + L+ GS +  +A A GF      +  + E    +DL+++   D  QAD Y+   + + PN                 GL  PK ++ V+ + PKG G +VR     G+   G G+    AVHQ+  G A  +AL ++  +G   +    T   +E ++D+FGE+  L G +  ++ + F+  ++
Sbjct:   18 KVAIIGYGSQGRAHALNLKDSGAQN-----VVIALKAGSPTVKKAEADGF-----KVMTVAEAAGWADLMMMATPDELQADIYK---ADIAPNIRDGAAIAFAHGLNVHFGLIEPKASVDVVMIAPKGPGHTVR-----GEYQKGGGVPCLVAVHQNASGNALELALSYACGVGGGRSGIIETNFREECETDLFGEQVVLCGGLVELIRAGFETLVE 216          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_SPHWW (Ketol-acid reductoisomerase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=ilvC PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.718e-15
Identity = 65/219 (29.68%), Postives = 110/219 (50.23%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDS-LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ ++G+GSQG A AQNL+DS +A+      V + LR GS +  +A  AGF   +       +    +D+V++L  D  QA  Y + +   +KP +                GL  P+ +I V  + PKG G +VR  Y +     G G+    A+ QD  G A +VAL ++ A+G        TT ++E ++D+FGE+  L G +  ++ + F+  ++
Sbjct:   18 KVAIVGYGSQGHAHAQNLQDSGVAD------VAIALRPGSATAKKAEGAGFKVLSNA-----DAAKWADIVMILAPDEHQAAIYNDDLRDNLKPGAALAFAHGLNV----HFGLIEPRADIDVFMIAPKGPGHTVRSEYQR-----GGGVPCLIAIAQDASGNAHDVALSYASAIGGGRSGVIETTFKEECETDLFGEQAVLCGGLSHLIMAGFETLVE 216          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_NITHX (Ketol-acid reductoisomerase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=ilvC PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.718e-15
Identity = 63/217 (29.03%), Postives = 107/217 (49.31%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ ++G+GSQG A A NL+DS  +      + + LRKGS S  +A AAGF      + D+ E     D+V++L  D  Q D Y E +   MK  +                 LD   ++ V+ + PKG G +VR  Y +     G G+    AV +D  G A ++ L ++ A+G        TT  +E ++D+FGE+  L G +  ++++ ++  ++
Sbjct:   18 KVVIVGYGSQGHAHALNLKDSGVKE-----IAIALRKGSASAQKAEAAGF-----KVMDVAEAAKWGDVVMMLTPDELQGDIYRENLHDNMKKGAALIFAHGLNVHFNL---LDPRADLDVLMIAPKGPGHTVRSEYQR-----GGGVPCLIAVARDSSGNAHDLGLSYASAVGGGRAGIIETTFREECETDLFGEQVVLCGGLVELIKNGYETLVE 216          
The following BLAST results are available for this feature:
BLAST of DY262550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ILVC_PROM52.847e-1530.56Ketol-acid reductoisomerase OS=Prochlorococcus mar... [more]
ILVC_NITWN2.847e-1529.03Ketol-acid reductoisomerase OS=Nitrobacter winogra... [more]
ILVC_METM62.847e-1529.17Ketol-acid reductoisomerase OS=Methanococcus marip... [more]
ILVC_JANSC2.847e-1529.95Ketol-acid reductoisomerase OS=Jannaschia sp. (str... [more]
ILVC_FRASN2.847e-1529.95Ketol-acid reductoisomerase OS=Frankia sp. (strain... [more]
ILVC_CUPTR2.847e-1529.03Ketol-acid reductoisomerase OS=Cupriavidus taiwane... [more]
ILVC_BIFA02.847e-1532.86Ketol-acid reductoisomerase OS=Bifidobacterium ani... [more]
ILVC_AGRRK2.847e-1529.03Ketol-acid reductoisomerase OS=Agrobacterium radio... [more]
ILVC_SPHWW3.718e-1529.68Ketol-acid reductoisomerase OS=Sphingomonas wittic... [more]
ILVC_NITHX3.718e-1529.03Ketol-acid reductoisomerase OS=Nitrobacter hamburg... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100BB09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262550 ID=DY262550; Name=DY262550; organism=Citrus clementina; type=EST; length=1290bp
CGGGTACTTTACCACTTAGCCCGTCGATCCCCAAATTGAGTCCATCGCCG
TCGTCCGAAACCCTAAAAGGAGCACTCAAGCATCTCAATCTAGCGTTTTT
CTCATCCACCGCGAAGTCCTTGAGAGCTCTCAAAACTACCAGAGGCAGGG
GCTCAGCTCTCGGCGCTCGGATGGCGTCCGAGACAGCTCTCAGGACACCT
TTCTTGCTGGATTTTGAGACATCCGTCTTTAAGAAGGACGCGATATCACT
GGCTGACCGCGATGAGTTCATTGTGAGAGGAGGAAGGGATTTGTTTAAGT
TGCTGCCGGACGCATTCAACGGGATTAACCAGATTGGGGTGATTGGCTGG
GGTTCCCAGGGACCTGCCCAAGCTCAGAATTTGAGGGATTCCCTTGCTGA
AGCTAAATCTGATATTGTTGTCAAGGTTGGGCTTAGGAAGGGCTCTCGTT
CTTTTGCTGAAGCTCGTGCTGCTGGTTTTACTGAAGAGAATGGAACTTTG
GGGGATATATATGAAACTATTTCAGGCAGTGATCTTGTGTTATTGTTGAT
TTCTGATGCTGCTCAGGCAGATAATTATGAGAAGATATTCTCTTGCATGA
AACCAAACAGCATCCTTGGACTTTCCCATGGGTTTCTTCTTGGGCATTTG
CAGTCAATAGGACTTGATTTCCCAAAGAATATCAGTGTGATTGCTGTGTG
TCCCAAGGGAATGGGTCCATCTGTGAGGAGACTCTATGTTCAAGGCAAAG
AGATTAATGGTGCTGGAATTAATTCCAGTTTTGCTGTCCACCAGGATGTT
GATGGAAGAGCTACCAATGTCGCCCTAGGATGGTCAGTTGCCCTTGGTTC
TCCTTTCACATTTGCCACCACATTAGAACAGGAGTACAAGAGTGACATCT
TTGGGGAGCGTGGCTTTCTACTTGGTGCTGTTCATGGAATTGTGGAATCC
TTGTTTAAAAGGTTCCTGAAAAGGGAAAGGATGAGGATCTGGCTTACAGA
ATACCCTGGAAGGGCAAACAAGGAATTAATCCAAAATCTTCTCAATCAGG
GGTATGTTGGCGGTTTAAAATTCCTTCCCTGAAAAAAAAAAAAGGGAATT
TGAAAAAGTTTAATAGGCCTCCAATTAACCCTGGCAGGAAAATTTAAAAA
AGGGGCCTAAAAAAATGGGGGGGCGGGGGGGGGAAAACCCCACGGTTGGT
TTGGGGGGGGGGCCGGGTTTTTTATAAAAAAGAAGGGTTTCCCACCTCTT
TTCCCCCTGGGAAAAAAAAATAAGAATAATAACCCCCGCG
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