DY262550

Overview
NameDY262550
Unique NameDY262550
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1290
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_CENSY (Ketol-acid reductoisomerase OS=Cenarchaeum symbiosum GN=ilvC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.413e-14
Identity = 68/216 (31.48%), Postives = 102/216 (47.22%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPN-SIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            + VIG+G QG AQA N++D      S + V VGL++G  S+ +A + G       +  + E    +D++ +L+ D  QA  Y      M PN S                 ++ P ++ VI V PKG G  VR  Y++     G G  S  AV QD  G A +  LG   A+GS       TT ++E ++D FGE+  L G    +V S F+  ++
Sbjct:   20 VAVIGYGIQGDAQANNMKD------SGLKVVVGLKEGGSSWKKAASDGH-----RVLTVAEACKEADIIHVLVPDMIQAQLYR---DEMGPNISKGKALSFSHAAAIHWKWIEAPSDVDVIMVAPKGPGSKVRETYLE-----GFGTPSIVAVEQDSTGGAWDRTLGLGKAIGSARAGLIKTTFKEEVETDWFGEQADLCGGSATMVVSAFETLVE 216          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_RHOBA (Ketol-acid reductoisomerase OS=Rhodopirellula baltica GN=ilvC PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.845e-14
Identity = 63/212 (29.72%), Postives = 101/212 (47.64%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP--FTFATTLEQEYKSDIFGERGFLLGAVHGIVESLF 956
            ++ ++G+GSQG AQAQNLRDS  E      V +G R GS ++  A + GF   +     I E    +D++ +L+ D  QAD Y + I   +   ++            Q   +D PK I  + V PKG G  VR  Y +     G G+ +  A+ +        + L ++  +G        TT  +E ++D+FGE+  L G V  +V++ F
Sbjct:   20 KVAILGYGSQGHAQAQNLRDSGCE------VIIGQRPGSANYDLAVSHGFEPMS-----IAEATKAADVINVLLPDEVQADIYRDSIRDNLSEGNVLMCSHGFNIHFGQ---IDPPKGIDTLLVAPKGPGHLVRSEYEK-----GGGVPALIALGEGASETTKQIGLAYAKGIGGTRGGVIETTFAEETETDLFGEQVVLCGGVSELVKAGF 212          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_RHILO (Ketol-acid reductoisomerase OS=Rhizobium loti GN=ilvC PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.845e-14
Identity = 60/217 (27.65%), Postives = 106/217 (48.85%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKN-ISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ +IG+GSQG A A NL+DS A+      + +GL+ GS +  +  A G       +  + +    +DL+++   D  QAD Y+   +   PN                 GL  PK+ + V+ + PKG G +VR     G+   G G+    AV+QD  G A ++AL ++  +G   +    T   +E ++D+FGE+  L G +  ++ + F+  ++
Sbjct:   18 KVAIIGYGSQGRAHALNLKDSGAKE-----IAIGLKAGSATAKKVEADGL-----KVMSVADAAKWADLMMMATPDELQADIYKNEIA---PNIRDGAAIAFAHGLNVHFGLIEPKSTVDVVMIAPKGPGHTVR-----GEYQKGGGVPCLVAVNQDASGNALDLALSYACGVGGGRSGIIETNFREECETDLFGEQVVLCGGLVELIRAGFETLVE 216          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_HALMA (Ketol-acid reductoisomerase OS=Haloarcula marismortui GN=ilvC PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.845e-14
Identity = 63/211 (29.86%), Postives = 100/211 (47.39%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFK 959
            + V+G+GSQG A A NL +S       + V VGLR+ S S+A+A  AG   E   +         +D V++L+ D  Q   YE I   +                 Q   ++ P+++ V  V PK  G  VRR Y +G+     G     AV+QD  G A   +L ++  +G        T+ ++E ++D+FGE+  L G V  +V++ F+
Sbjct:   25 VAVLGYGSQGHAHALNLHES------GVDVIVGLRQDSSSWADAEDAGLRVETPDVA-----AGEADRVVMLVPDTIQPAVYEAIEDELDAGDTLQFAHGFNIHYGQ---IEPPEDVDVTMVAPKSPGHLVRRTYERGE-----GTPGLIAVYQDATGNAKQESLAYAKGIGCTRAGVIETSFQEEVETDLFGEQAVLCGGVTEMVKAGFE 216          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_ACICJ (Ketol-acid reductoisomerase OS=Acidiphilium cryptum (strain JF-5) GN=ilvC PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.845e-14
Identity = 66/221 (29.86%), Postives = 112/221 (50.68%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ V+G+GSQG A A NL++S  +      + V LRKGS + A+A AAG    T E        E  + +D+V++L  D  Q D Y + + + +KP +                 L  P+ +I V  + PKG G +VR  Y +     G G+    AV Q+  G A ++AL ++ A+G        TT ++E ++D+FGE+  L G +  ++++ F+  ++
Sbjct:   18 KVAVVGYGSQGHAHALNLKESGVKE-----LVVALRKGSAAVAKAEAAGLRVMTPE--------EAAAWADVVMILTPDEGQGDLYRDSLAANLKPGAAIAFAHGLNI----HFNLIEPRADIDVFMIAPKGPGHTVRSEYQR-----GGGVPCLVAVAQNPSGNALDIALSYASAIGGGRAGIIETTFKEECETDLFGEQTVLCGGLVELIKAGFETLVE 216          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_RHIL3 (Ketol-acid reductoisomerase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=ilvC PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.410e-14
Identity = 63/213 (29.58%), Postives = 105/213 (49.30%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFK 959
            ++ VIG+GSQG A A NL+DS A+      V + L+ GS +  +A A GF      +  + E  + +DL+++   D  QAD Y+   + +  N                 GL  PK ++ V+ + PKG G +VR     G+   G G+    AVHQ+  G A  +AL ++  +G   +    T   +E ++D+FGE+  L G +  ++ + F+
Sbjct:   18 KVAVIGYGSQGRAHALNLKDSGAQN-----VVIALKAGSPTVKKAEADGF-----KVMTVAEAAAWADLMMMATPDELQADIYK---ADIAGNIRDGAAIAFAHGLNVHFGLIEPKASVDVVMIAPKGPGHTVR-----GEYQKGGGVPCLVAVHQNASGNALELALSYACGVGGGRSGIIETNFREECETDLFGEQVVLCGGLVELIRAGFE 212          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_METSB (Ketol-acid reductoisomerase OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=ilvC PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.410e-14
Identity = 64/217 (29.49%), Postives = 103/217 (47.47%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFP-KNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ +IG+GSQG A A NLRDS       + V V LR+GS + A+A   G       +  + +    +D+V++L  D  Q D Y +    + PN                  L  P K++ V  V PKG G +VR  Y +     G G+    A+ QD  G A ++AL ++ A+G        TT  +E ++D+FGE+  L G +  ++   F+  ++
Sbjct:   18 KVAIIGYGSQGHAHALNLRDS-----GVMDVSVALREGSATAAKAAGEGL-----KVLSVADAAKWADVVMMLTPDELQGDIYSE---HLAPNLKQGAALLFAHGLNIHFNLIEPRKDLDVAMVAPKGPGHTVRSEYKR-----GGGVPCLIAIAQDASGNAHDIALSYASAIGGGRAGIIETTFREECETDLFGEQVVLCGGLVELIRGGFETLVE 216          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_SULAC (Ketol-acid reductoisomerase OS=Sulfolobus acidocaldarius GN=ilvC PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.147e-14
Identity = 62/217 (28.57%), Postives = 102/217 (47.00%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ V+G+GSQG A A NLRD      S I V VGL +   S+ +A   GF           E +  SD+++ L+ D  Q   Y E++   +K                    ++ P N+ V  + PK  GP VR  + +     G G+ +  A +QD  G+A   AL  + A+G+       TT ++E ++D+FGE+  L+G V  ++   F+  ++
Sbjct:   19 RVAVLGYGSQGRAWALNLRD------SGIKVSVGLEREGNSWKQAENDGFKPLR-----TEEAVRNSDIIIFLLPDMIQRTVYLERVKPYLKEGMDLVFAHGFNIHYRL---IEPPSNVDVYMIAPKAPGPIVREYFAK-----GGGVPALVATYQDHSGKALQKALAVAKAIGATRAGVIETTFKEETETDLFGEQVDLVGGVMQLMRYAFQTLVE 216          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_RHOMO (Ketol-acid reductoisomerase OS=Rhodospirillum molischianum GN=ilvC PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.147e-14
Identity = 64/217 (29.49%), Postives = 106/217 (48.85%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ VIG+GSQG A   NLRDS  +      V V LR GS S  +A A G            E  + +D+V++L  D  QAD Y+ ++ + +KP +                 ++   ++ V  V PKG G +VR     G+ + G G+    AV Q+  G A  +AL ++ A+G   +    TT  +E ++D+FGE+  L G +  +++  F+  ++
Sbjct:   18 KVAVIGYGSQGHAHVLNLRDSGVKD-----VAVALRPGSASIKKAEAEGLKVLTPA-----EAAAWADVVMILTPDELQADLYKSELAANLKPGAALVFAHGLAIHFKL---IEARADLDVFMVAPKGPGHTVR-----GEYLKGGGVPCLVAVAQNPTGNALELALSYASAIGGGRSGIIETTFREECETDLFGEQVVLCGGLSKLIQYGFETLVE 216          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_RHORT (Ketol-acid reductoisomerase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=ilvC PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.111e-14
Identity = 64/218 (29.36%), Postives = 105/218 (48.17%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ V+G+GSQG A   NLRDS         V V LR+GS S  +A   G   +        E  + +D+V++L  D  Q D Y + + + MK  +                 L  P+ ++ V  + PKG G +VR  YV+G      G+    AV QD  G A  +AL ++ A+G   +    TT  +E ++D+FGE+  L G +  ++++ F+  ++
Sbjct:   18 KVAVVGYGSQGHAHVLNLRDSGVTE-----VCVALREGSPSAKKATGQGLVVKTPA-----EAAAWADVVMILTPDELQGDLYKDHLHANMKQGAALAFAHGLNIH----FALIEPRPDLDVFMIAPKGPGHTVRSEYVRG-----GGVPCLVAVAQDASGNAMEIALSYASAIGGGRSGIIETTFREECETDLFGEQAVLCGGLTELIKNGFETLVE 216          
The following BLAST results are available for this feature:
BLAST of DY262550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ILVC_CENSY1.413e-1431.48Ketol-acid reductoisomerase OS=Cenarchaeum symbios... [more]
ILVC_RHOBA1.845e-1429.72Ketol-acid reductoisomerase OS=Rhodopirellula balt... [more]
ILVC_RHILO1.845e-1427.65Ketol-acid reductoisomerase OS=Rhizobium loti GN=i... [more]
ILVC_HALMA1.845e-1429.86Ketol-acid reductoisomerase OS=Haloarcula marismor... [more]
ILVC_ACICJ1.845e-1429.86Ketol-acid reductoisomerase OS=Acidiphilium cryptu... [more]
ILVC_RHIL32.410e-1429.58Ketol-acid reductoisomerase OS=Rhizobium leguminos... [more]
ILVC_METSB2.410e-1429.49Ketol-acid reductoisomerase OS=Methylocella silves... [more]
ILVC_SULAC3.147e-1428.57Ketol-acid reductoisomerase OS=Sulfolobus acidocal... [more]
ILVC_RHOMO3.147e-1429.49Ketol-acid reductoisomerase OS=Rhodospirillum moli... [more]
ILVC_RHORT4.111e-1429.36Ketol-acid reductoisomerase OS=Rhodospirillum rubr... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100BB09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262550 ID=DY262550; Name=DY262550; organism=Citrus clementina; type=EST; length=1290bp
CGGGTACTTTACCACTTAGCCCGTCGATCCCCAAATTGAGTCCATCGCCG
TCGTCCGAAACCCTAAAAGGAGCACTCAAGCATCTCAATCTAGCGTTTTT
CTCATCCACCGCGAAGTCCTTGAGAGCTCTCAAAACTACCAGAGGCAGGG
GCTCAGCTCTCGGCGCTCGGATGGCGTCCGAGACAGCTCTCAGGACACCT
TTCTTGCTGGATTTTGAGACATCCGTCTTTAAGAAGGACGCGATATCACT
GGCTGACCGCGATGAGTTCATTGTGAGAGGAGGAAGGGATTTGTTTAAGT
TGCTGCCGGACGCATTCAACGGGATTAACCAGATTGGGGTGATTGGCTGG
GGTTCCCAGGGACCTGCCCAAGCTCAGAATTTGAGGGATTCCCTTGCTGA
AGCTAAATCTGATATTGTTGTCAAGGTTGGGCTTAGGAAGGGCTCTCGTT
CTTTTGCTGAAGCTCGTGCTGCTGGTTTTACTGAAGAGAATGGAACTTTG
GGGGATATATATGAAACTATTTCAGGCAGTGATCTTGTGTTATTGTTGAT
TTCTGATGCTGCTCAGGCAGATAATTATGAGAAGATATTCTCTTGCATGA
AACCAAACAGCATCCTTGGACTTTCCCATGGGTTTCTTCTTGGGCATTTG
CAGTCAATAGGACTTGATTTCCCAAAGAATATCAGTGTGATTGCTGTGTG
TCCCAAGGGAATGGGTCCATCTGTGAGGAGACTCTATGTTCAAGGCAAAG
AGATTAATGGTGCTGGAATTAATTCCAGTTTTGCTGTCCACCAGGATGTT
GATGGAAGAGCTACCAATGTCGCCCTAGGATGGTCAGTTGCCCTTGGTTC
TCCTTTCACATTTGCCACCACATTAGAACAGGAGTACAAGAGTGACATCT
TTGGGGAGCGTGGCTTTCTACTTGGTGCTGTTCATGGAATTGTGGAATCC
TTGTTTAAAAGGTTCCTGAAAAGGGAAAGGATGAGGATCTGGCTTACAGA
ATACCCTGGAAGGGCAAACAAGGAATTAATCCAAAATCTTCTCAATCAGG
GGTATGTTGGCGGTTTAAAATTCCTTCCCTGAAAAAAAAAAAAGGGAATT
TGAAAAAGTTTAATAGGCCTCCAATTAACCCTGGCAGGAAAATTTAAAAA
AGGGGCCTAAAAAAATGGGGGGGCGGGGGGGGGAAAACCCCACGGTTGGT
TTGGGGGGGGGGCCGGGTTTTTTATAAAAAAGAAGGGTTTCCCACCTCTT
TTCCCCCTGGGAAAAAAAAATAAGAATAATAACCCCCGCG
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