DY262550

Overview
NameDY262550
Unique NameDY262550
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1290
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_HELMI (Ketol-acid reductoisomerase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=ilvC PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 6.548e-20
Identity = 71/216 (32.87%), Postives = 107/216 (49.54%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            + VIG+GSQG AQAQNL+D      S + V +GLR  S    EA+A GF      +  + E  + +D++ +LI D  Q   Y E+I   +                 Q   +  PKN+ V  V PK  G  VRR+Y       GAG+ +  AV+QD  GRA ++AL ++   G        TT  +E ++D+FGE+  L G    +V++ F+  ++
Sbjct:   19 VAVIGYGSQGHAQAQNLKD------SGVNVIIGLRPDSNRVKEAQAYGF-----EVYSVAEAAAKADIIQILIPDEKQGKVYREEIAPYLTEGKALCFSHGFNIHFGQ---IQPPKNVDVFMVAPKSPGHMVRRMYTM-----GAGVPTLIAVYQDATGRAKDLALAYAKGTGGTRAGVIETTFREETETDLFGEQAVLCGGASALVKAGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_HALOH (Ketol-acid reductoisomerase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=ilvC PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 6.548e-20
Identity = 70/212 (33.02%), Postives = 109/212 (51.42%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG--SPFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFK 959
            I V+G+GSQG AQAQNL+D      S + V VGLRKGS S+ +A + GF      +    E +  +D++ +LI D  Q+  Y E I   ++  +             Q +    P N+ +  V PK  G  VRR+Y++GK     G+    AV QD  G+A  + L ++  +G        TT ++E ++D+FGE+  L G V  +V++ F+
Sbjct:   20 IAVLGYGSQGHAQAQNLKD------SGLNVIVGLRKGSSSWKKAESDGF-----RVFKTSEAVKRADIIQVLIPDEVQSRVYKEDIEPYLEEGNALVFSHGFNIHFGQIVP---PDNVDIFMVAPKSPGHLVRRMYLEGK-----GVPGLLAVEQDYSGKAKELGLAYAKGIGCTKAGVIETTFKEETETDLFGEQAVLCGGVTSLVKAGFE 212          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_CLOPH (Ketol-acid reductoisomerase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=ilvC PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 6.548e-20
Identity = 68/212 (32.08%), Postives = 112/212 (52.83%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFK 959
            + VIG+GSQG A A N+++S       + V +GL +GS+S+A+A AAGF           E    +D++++LI+D  QA  Y E I   ++  +             Q I    PK++ V+ + PKG G +VR  Y +G+     G+    AVHQD  G+A ++ L +++A+G        TT  +E ++D+FGE+  L G V  +++  F+
Sbjct:   20 VAVIGYGSQGHAHALNMKES------GVHVIIGLYEGSKSWAKASAAGFEVYTAA-----EAAKKADVIMILINDEKQAKMYKESIEPNLEAGNALMFAHGFAIHFGQIIP---PKDVDVLMIAPKGPGHTVRSQYQEGQ-----GVPCLIAVHQDATGKAHDLGLAYALAIGGARAGVLETTFREETETDLFGEQAVLCGGVTALMKCGFE 212          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_BRAHW (Ketol-acid reductoisomerase OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=ilvC PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 6.548e-20
Identity = 73/214 (34.11%), Postives = 112/214 (52.34%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSIXXXXXXXXXXXXQSIGLDF---PKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWS--VALGSPFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLF 956
            I ++G+GSQG A AQNL+DS       + V VGLRK S +  +A  AGF      + ++ E    +D+V++L+ D   AD Y  ++   MK  ++             +I   F    KNI VI V PKG G +VR  Y++G+     G+ S  AV+QD  GRA + AL ++  +  G      TT  +E ++D+FGE+  L G V  ++++ F
Sbjct:   20 IAIMGYGSQGHAHAQNLKDS------GMNVIVGLRKDSANCKKAEEAGFK-----VMEVEEAAKLADIVMMLVPDEVSADIYNTQVAPHMKEGNVLMYAHGF------NIHFQFVVPAKNIDVIMVAPKGPGHTVRSQYLEGR-----GVPSLIAVYQDFSGRAKDYALAYASGIGAGRAGILETTFREETETDLFGEQAVLCGGVTELMKAGF 211          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_ACIBL (Ketol-acid reductoisomerase OS=Acidobacteria bacterium (strain Ellin345) GN=ilvC PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 6.548e-20
Identity = 67/217 (30.88%), Postives = 110/217 (50.69%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++G++G+GSQG A A NL DS       + V+VGLR  S S A+A  +G       +G + +    +D++++L  D  QA  YEK I   +KP                   +  P+ I V  V PK  G  VR ++ +G      G  + FA+HQD  G+A  +AL ++ A+G+       TT ++E ++D+FGE+  L G    +V++ F+  ++
Sbjct:   19 KVGIVGYGSQGHAHALNLVDS------GVQVRVGLRPSSSSKAKAEKSGLQ-----VGSVSDVAQWADVIMILAPDTEQAAIYEKDIAPHLKPGKTLMFAHGFNIRYGT---ITPPEGIDVSMVAPKAPGHRVREVFTEG-----GGTPALFAIHQDASGKAREIALSYAAAIGTTRAGVLETTFKEETETDLFGEQAVLCGGAAALVKAGFETLVE 216          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_STAES (Ketol-acid reductoisomerase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=ilvC PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 8.552e-20
Identity = 74/228 (32.46%), Postives = 118/228 (51.75%), Query Frame = 3
Query:  309 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---ETISGSDLVLLLISDAAQADNYEKIFS--CMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            DA  G  +I VIG+GSQG A AQNL+D+  +      V +GLR G RSF +A+  GF        D+Y   E    +D+V++L+ D  Q + Y K       K N++                ++ P ++ V  V PKG G  VRR +V+     G+ + + F V QD  G+A N+AL ++  +G+       TT ++E ++D+FGE+  L G V  +++S F+  ++
Sbjct:   13 DALQG-KKIAVIGYGSQGHAHAQNLKDNGYD------VVIGLRPG-RSFNKAKEDGF--------DVYTVSEATQQADVVMVLLPDEIQGEVYNKEIKPYLEKGNALAFAHGFNIHFSV----IEPPSDVDVFLVAPKGPGHLVRRTFVE-----GSAVPALFGVQQDATGQARNIALSYAKGIGATRAGVIETTFKEETETDLFGEQAVLCGGVSKLIQSGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_STAEQ (Ketol-acid reductoisomerase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=ilvC PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 8.552e-20
Identity = 74/228 (32.46%), Postives = 118/228 (51.75%), Query Frame = 3
Query:  309 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---ETISGSDLVLLLISDAAQADNYEKIFS--CMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            DA  G  +I VIG+GSQG A AQNL+D+  +      V +GLR G RSF +A+  GF        D+Y   E    +D+V++L+ D  Q + Y K       K N++                ++ P ++ V  V PKG G  VRR +V+     G+ + + F V QD  G+A N+AL ++  +G+       TT ++E ++D+FGE+  L G V  +++S F+  ++
Sbjct:   13 DALQG-KKIAVIGYGSQGHAHAQNLKDNGYD------VVIGLRPG-RSFNKAKEDGF--------DVYTVSEATQQADVVMVLLPDEIQGEVYNKEIKPYLEKGNALAFAHGFNIHFSV----IEPPSDVDVFLVAPKGPGHLVRRTFVE-----GSAVPALFGVQQDATGQARNIALSYAKGIGATRAGVIETTFKEETETDLFGEQAVLCGGVSKLIQSGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_HALHL (Ketol-acid reductoisomerase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=ilvC PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 8.552e-20
Identity = 68/217 (31.34%), Postives = 113/217 (52.07%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ +IG+GSQG A A NL++      S + V VGLR GS S A+A+ AG       +  + E   G+D+V++L+ D A  D Y +++   +K  +             Q   +    +  VI + PKG G +VR  YV      GAG+ S  A+ QD  G+A  +AL ++VA G   +    T+  +E ++D+FGE+  L G +  ++E+ F+  ++
Sbjct:   18 RVAIIGYGSQGHAHANNLKE------SGVNVVVGLRPGSSSAAKAQEAGL-----EVASVEEATQGADVVMMLVPDEAAPDIYNQQVAPNLKDGAAIAFAHGFNIHYGQ---IQPAADHDVIMIAPKGPGHTVRSTYVA-----GAGVPSLIAIEQDASGQAKEIALAYAVANGGGRSGIIETSFREETETDLFGEQTVLCGGIAALIEAGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_ANAVT (Ketol-acid reductoisomerase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ilvC PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 8.552e-20
Identity = 68/216 (31.48%), Postives = 114/216 (52.78%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP--FTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            I +IG+GSQG A A NL+DS       + V VGL  GS+S  +A+AAG T +N     + +  + +D +++L+ D  Q   Y+ +I   ++  +             Q +    P N+ V+ V PKG G  VRR Y QG+     G+ + FAV+QD  G+A + AL ++  +G        TT  +E ++D+FGE+  L G +  ++++ F+  ++
Sbjct:   20 IAIIGYGSQGHAHALNLKDS------GLNVIVGLYPGSKSAEKAQAAGLTVKN-----VADAANVADFIMILLPDEVQKTVYKNEIEPNLQEGNTLAFAHGFNIHFGQVVP---PANVDVVMVAPKGPGHLVRRTYEQGQ-----GVPALFAVYQDASGKARDRALSYAKGIGGTRGGVLETTFREETETDLFGEQAVLCGGLSALIKAGFETLVE 216          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_THET8 (Ketol-acid reductoisomerase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=ilvC PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.117e-19
Identity = 72/217 (33.18%), Postives = 114/217 (52.53%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFP-KNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ V+G+GSQG A A NL+DS       + V+VGLRKGSRS+ +A AAG       +  + E +  +D+V++L+ D  QA  Y +    ++PN                 G   P K++ V  V PKG G  VR  Y +     G+G+ +  AVHQD  G A   AL ++ A+G+      ATT + E ++D+FGE+  L G +  ++ + F+  ++
Sbjct:   18 KVAVLGFGSQGHAHALNLKDS------GVDVRVGLRKGSRSWEKAEAAGL-----RVLPVAEAVREADVVMVLLPDEKQAQVYREE---VEPNLKEGGALAFAHGFNVHFGQIKPRKDLDVWMVAPKGPGHLVRSEYQK-----GSGVPALVAVHQDASGSAFPTALAYAKAIGAARAGVIATTFKDETETDLFGEQAVLCGGLTRLIRAGFETLVE 215          
The following BLAST results are available for this feature:
BLAST of DY262550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ILVC_HELMI6.548e-2032.87Ketol-acid reductoisomerase OS=Heliobacterium mode... [more]
ILVC_HALOH6.548e-2033.02Ketol-acid reductoisomerase OS=Halothermothrix ore... [more]
ILVC_CLOPH6.548e-2032.08Ketol-acid reductoisomerase OS=Clostridium phytofe... [more]
ILVC_BRAHW6.548e-2034.11Ketol-acid reductoisomerase OS=Brachyspira hyodyse... [more]
ILVC_ACIBL6.548e-2030.88Ketol-acid reductoisomerase OS=Acidobacteria bacte... [more]
ILVC_STAES8.552e-2032.46Ketol-acid reductoisomerase OS=Staphylococcus epid... [more]
ILVC_STAEQ8.552e-2032.46Ketol-acid reductoisomerase OS=Staphylococcus epid... [more]
ILVC_HALHL8.552e-2031.34Ketol-acid reductoisomerase OS=Halorhodospira halo... [more]
ILVC_ANAVT8.552e-2031.48Ketol-acid reductoisomerase OS=Anabaena variabilis... [more]
ILVC_THET81.117e-1933.18Ketol-acid reductoisomerase OS=Thermus thermophilu... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100BB09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262550 ID=DY262550; Name=DY262550; organism=Citrus clementina; type=EST; length=1290bp
CGGGTACTTTACCACTTAGCCCGTCGATCCCCAAATTGAGTCCATCGCCG
TCGTCCGAAACCCTAAAAGGAGCACTCAAGCATCTCAATCTAGCGTTTTT
CTCATCCACCGCGAAGTCCTTGAGAGCTCTCAAAACTACCAGAGGCAGGG
GCTCAGCTCTCGGCGCTCGGATGGCGTCCGAGACAGCTCTCAGGACACCT
TTCTTGCTGGATTTTGAGACATCCGTCTTTAAGAAGGACGCGATATCACT
GGCTGACCGCGATGAGTTCATTGTGAGAGGAGGAAGGGATTTGTTTAAGT
TGCTGCCGGACGCATTCAACGGGATTAACCAGATTGGGGTGATTGGCTGG
GGTTCCCAGGGACCTGCCCAAGCTCAGAATTTGAGGGATTCCCTTGCTGA
AGCTAAATCTGATATTGTTGTCAAGGTTGGGCTTAGGAAGGGCTCTCGTT
CTTTTGCTGAAGCTCGTGCTGCTGGTTTTACTGAAGAGAATGGAACTTTG
GGGGATATATATGAAACTATTTCAGGCAGTGATCTTGTGTTATTGTTGAT
TTCTGATGCTGCTCAGGCAGATAATTATGAGAAGATATTCTCTTGCATGA
AACCAAACAGCATCCTTGGACTTTCCCATGGGTTTCTTCTTGGGCATTTG
CAGTCAATAGGACTTGATTTCCCAAAGAATATCAGTGTGATTGCTGTGTG
TCCCAAGGGAATGGGTCCATCTGTGAGGAGACTCTATGTTCAAGGCAAAG
AGATTAATGGTGCTGGAATTAATTCCAGTTTTGCTGTCCACCAGGATGTT
GATGGAAGAGCTACCAATGTCGCCCTAGGATGGTCAGTTGCCCTTGGTTC
TCCTTTCACATTTGCCACCACATTAGAACAGGAGTACAAGAGTGACATCT
TTGGGGAGCGTGGCTTTCTACTTGGTGCTGTTCATGGAATTGTGGAATCC
TTGTTTAAAAGGTTCCTGAAAAGGGAAAGGATGAGGATCTGGCTTACAGA
ATACCCTGGAAGGGCAAACAAGGAATTAATCCAAAATCTTCTCAATCAGG
GGTATGTTGGCGGTTTAAAATTCCTTCCCTGAAAAAAAAAAAAGGGAATT
TGAAAAAGTTTAATAGGCCTCCAATTAACCCTGGCAGGAAAATTTAAAAA
AGGGGCCTAAAAAAATGGGGGGGCGGGGGGGGGAAAACCCCACGGTTGGT
TTGGGGGGGGGGCCGGGTTTTTTATAAAAAAGAAGGGTTTCCCACCTCTT
TTCCCCCTGGGAAAAAAAAATAAGAATAATAACCCCCGCG
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