DY262550

Overview
NameDY262550
Unique NameDY262550
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1290
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_THET2 (Ketol-acid reductoisomerase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=ilvC PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.117e-19
Identity = 72/217 (33.18%), Postives = 114/217 (52.53%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFP-KNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ V+G+GSQG A A NL+DS       + V+VGLRKGSRS+ +A AAG       +  + E +  +D+V++L+ D  QA  Y +    ++PN                 G   P K++ V  V PKG G  VR  Y +     G+G+ +  AVHQD  G A   AL ++ A+G+      ATT + E ++D+FGE+  L G +  ++ + F+  ++
Sbjct:   18 KVAVLGFGSQGHAHALNLKDS------GVDVRVGLRKGSRSWEKAEAAGL-----RVLPVAEAVREADVVMVLLPDEKQAQVYREE---VEPNLKEGGALAFAHGFNVHFGQIKPRKDLDVWMVAPKGPGHLVRSEYQK-----GSGVPALVAVHQDASGSAFPTALAYAKAIGAARAGVIATTFKDETETDLFGEQAVLCGGLTRLIRAGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_LARHH (Ketol-acid reductoisomerase OS=Laribacter hongkongensis (strain HLHK9) GN=ilvC PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.117e-19
Identity = 70/213 (32.86%), Postives = 112/213 (52.58%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP--FTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFK 959
            ++ +IG+GSQG A AQNL++S       + V VGLRK   S+ +A AAG T +     ++ E +  +D+V++L+ D  Q D Y   I   +K  +             Q +    P +I VI + PKG G +VR  +++G      G+ S  AV+QD  GRA +VAL ++ A G        T+  +E ++D+FGE+  L G    +V++ F+
Sbjct:   18 KVAIIGYGSQGHAHAQNLKES------GVDVIVGLRKDGASWKKAEAAGHTVK-----EVGEAVKTADVVMILLPDETQPDVYRNDIAPNLKKGAALAFAHGFNIHYNQIVP---PADIDVIMIAPKGPGHTVRSEFLKG-----GGVPSLIAVYQDHSGRARDVALSYAAANGGTKGGVIETSFREETETDLFGEQAVLCGGAVELVKAGFE 211          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_CAMC1 (Ketol-acid reductoisomerase OS=Campylobacter concisus (strain 13826) GN=ilvC PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.117e-19
Identity = 67/212 (31.60%), Postives = 110/212 (51.89%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLF 956
            ++ +IG+GSQG A A+NLRD      + + V +GL KG +S+A+A A GF  +      + E   G+D++++L  D  QA+ Y+ +I   +K ++             Q   +  P NI VI + PK  G +VR  +     + G GI    AV Q+  G+A  +AL ++  +G   T    TT + E ++D+FGE+  L G +  +V + F
Sbjct:   20 KVAIIGFGSQGHAHAENLRD------NGVSVVIGLVKGGKSWAKAEAKGFEVKT-----VSEATKGADVIMILTPDELQAEIYKNEIEPNLKDHAAIAFGHGFNVHFGQ---IKAPANIDVIMIAPKAPGHTVRSEF-----LRGGGIPDLIAVEQNASGKAKEIALSYACGIGGGRTGIIETTFKDETETDLFGEQAVLCGGLCALVNAGF 212          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_ANASP (Ketol-acid reductoisomerase OS=Anabaena sp. (strain PCC 7120) GN=ilvC PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.117e-19
Identity = 68/216 (31.48%), Postives = 114/216 (52.78%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP--FTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            I +IG+GSQG A A NL+DS       + V VGL  GS+S  +A+AAG T +N     + +  + +D +++L+ D  Q   Y+ +I   ++  +             Q +    P N+ V+ V PKG G  VRR Y QG+     G+ + FAV+QD  G+A + AL ++  +G        TT  +E ++D+FGE+  L G +  ++++ F+  ++
Sbjct:   20 IAIIGYGSQGHAHALNLKDS------GLNVIVGLYPGSKSAEKAQAAGLTVKN-----VADAANIADFIMILLPDEVQKTVYKNEIEPNLQEGNTLAFAHGFNIHFGQVVP---PANVDVVMVAPKGPGHLVRRTYEQGQ-----GVPALFAVYQDASGKARDRALSYAKGIGGTRGGVLETTFREETETDLFGEQAVLCGGLSALIKAGFETLVE 216          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_PSEPF (Ketol-acid reductoisomerase OS=Pseudomonas fluorescens (strain Pf0-1) GN=ilvC PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.459e-19
Identity = 70/217 (32.26%), Postives = 112/217 (51.61%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ +IG+GSQG AQA NL+DS       + V VGLRKGS + A+A A G       + D+   ++G+DLV++L  D  Q+  Y+     ++PN                     P+ ++ VI + PK  G +VR  +V+G      GI    A++QD  G A NVAL ++  +G   T    TT + E ++D+FGE+  L G    +V++ F+  ++
Sbjct:   18 KVAIIGYGSQGHAQACNLKDS------GVDVTVGLRKGSATVAKAEAHGLK-----VTDVAAAVAGADLVMILTPDEFQSQLYKNE---IEPNIKKGATLAFSHGFAIHYNQVVPRADLDVIMIAPKAPGHTVRSEFVKG-----GGIPDLIAIYQDASGNAKNVALSYAAGVGGGRTGIIETTFKDETETDLFGEQAVLCGGTVELVKAGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_PSEF5 (Ketol-acid reductoisomerase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=ilvC PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.459e-19
Identity = 70/217 (32.26%), Postives = 112/217 (51.61%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ +IG+GSQG AQA NL+DS       + V VGLRKGS + A+A A G       + D+   ++G+DLV++L  D  Q+  Y+     ++PN                     P+ ++ VI + PK  G +VR  +V+G      GI    A++QD  G A NVAL ++  +G   T    TT + E ++D+FGE+  L G    +V++ F+  ++
Sbjct:   18 KVAIIGYGSQGHAQACNLKDS------GVDVTVGLRKGSATVAKAEAHGLK-----VTDVAAAVAGADLVMILTPDEFQSQLYKNE---IEPNIKKGATLAFSHGFAIHYNQVVPRADLDVIMIAPKAPGHTVRSEFVKG-----GGIPDLIAIYQDASGNAKNVALSYAAGVGGGRTGIIETTFKDETETDLFGEQAVLCGGTVELVKAGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_NOSP7 (Ketol-acid reductoisomerase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ilvC PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.905e-19
Identity = 66/216 (30.56%), Postives = 113/216 (52.31%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            I +IG+GSQG A A NL+DS       + V VGL  GS+S A+A AAG T ++     + +  + +D +++L+ D  Q   Y+ +I   ++  ++            Q +    P N+ V+ V PKG G  VRR Y       G G+ + FAV+QD  G+A + A+ ++  +G        TT  +E ++D+FGE+  L G +  ++++ F+  ++
Sbjct:   20 IAIIGYGSQGHAHALNLKDS------GLNVIVGLYPGSKSVAKAEAAGLTVKS-----VADAANAADFIMILLPDEVQKTIYKNEIEPNLEEGNVLAFAHGFNIHFGQVVP---PANVDVVMVAPKGPGHLVRRTYE-----GGEGVPALFAVYQDASGQARDRAMSYAKGIGGTRAGVLETTFREETETDLFGEQAVLCGGLSALIKAGFETLVE 216          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_DEIDV (Ketol-acid reductoisomerase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=ilvC PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.905e-19
Identity = 71/216 (32.87%), Postives = 110/216 (50.93%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIG-LDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG--SPFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            I +IG+GSQ  A AQNLRD      + + V VGLR+GS S A+A  AG       +  I +    +D+V+LLI D  Q   YE+    + P+                 G +  P  + V  V PKG G  +RR+Y      +GAG+   FAV QD  G+A ++AL ++  +G        TT ++E ++D+FGE+  L G V  ++++ F+  ++
Sbjct:   21 IAIIGYGSQAHAHAQNLRD------TGLNVVVGLREGSASRAKAEQAGL-----RVASIEDATREADVVMLLIPDENQPKVYEE---SVAPHLTEGKALAFGHGFNVHFGRIKPPAGVDVFLVAPKGPGHMLRRVYA-----DGAGMPGIFAVAQDASGQARDIALAYARGIGCTRAGVLETTFKEETETDLFGEQSVLCGGVTSLIQAGFETLVE 217          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_CLOB8 (Ketol-acid reductoisomerase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=ilvC PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.905e-19
Identity = 68/217 (31.34%), Postives = 109/217 (50.23%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ +IG+GSQG A A NL +S       + V VGL  GS+S+A+A AAG       +  + +    +DL+++L+ D  QA  Y E+I   ++  +             Q +    P  + V  V PKG G  VRR Y +G     AG+    AVHQD  G+A   AL ++  +G        TT + E ++D+FGE+  L G V  ++++ F+  ++
Sbjct:   19 KVAIIGYGSQGHAHALNLHES------GVDVVVGLYNGSKSWAKAEAAGLQ-----VATVADAAKAADLIMILLPDEKQAKIYNEEIAPNLEEGNALVFAHGFNIHFGQVVP---PSYVDVFMVAPKGPGHLVRRTYTEG-----AGVPCLIAVHQDATGKAKQYALAYANGIGGARAGVLETTFKDETETDLFGEQAVLCGGVSELIKAGFETLVE 216          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_ALHEH (Ketol-acid reductoisomerase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=ilvC PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.905e-19
Identity = 69/217 (31.80%), Postives = 113/217 (52.07%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ VIG+GSQG A A NL++S       + V VGLR+GS S A+A+ AG       +  I +  + +D+V++L  D  QA  Y  +I   +KP +             Q   +    ++ VI V PKG G  VR  YV+G      G+ S  A+HQD  G+A ++AL ++ A G        T+  +E ++D+FGE+  L G +  ++++ F+  ++
Sbjct:   18 KVAVIGYGSQGHAHANNLKES------GVDVVVGLREGSSSAAKAQKAGLA-----VASIEDAAAQADVVMILAPDEHQAVIYHNQIAPNVKPGAAIAFAHGFNIHFGQ---IQPAADLDVIMVAPKGPGHLVRSTYVEG-----GGVPSLIAIHQDATGKAKDIALSYASANGGGRAGVIETSFREETETDLFGEQAVLCGGITSLIQAGFETLVE 215          
The following BLAST results are available for this feature:
BLAST of DY262550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ILVC_THET21.117e-1933.18Ketol-acid reductoisomerase OS=Thermus thermophilu... [more]
ILVC_LARHH1.117e-1932.86Ketol-acid reductoisomerase OS=Laribacter hongkong... [more]
ILVC_CAMC11.117e-1931.60Ketol-acid reductoisomerase OS=Campylobacter conci... [more]
ILVC_ANASP1.117e-1931.48Ketol-acid reductoisomerase OS=Anabaena sp. (strai... [more]
ILVC_PSEPF1.459e-1932.26Ketol-acid reductoisomerase OS=Pseudomonas fluores... [more]
ILVC_PSEF51.459e-1932.26Ketol-acid reductoisomerase OS=Pseudomonas fluores... [more]
ILVC_NOSP71.905e-1930.56Ketol-acid reductoisomerase OS=Nostoc punctiforme ... [more]
ILVC_DEIDV1.905e-1932.87Ketol-acid reductoisomerase OS=Deinococcus deserti... [more]
ILVC_CLOB81.905e-1931.34Ketol-acid reductoisomerase OS=Clostridium beijeri... [more]
ILVC_ALHEH1.905e-1931.80Ketol-acid reductoisomerase OS=Alkalilimnicola ehr... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100BB09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262550 ID=DY262550; Name=DY262550; organism=Citrus clementina; type=EST; length=1290bp
CGGGTACTTTACCACTTAGCCCGTCGATCCCCAAATTGAGTCCATCGCCG
TCGTCCGAAACCCTAAAAGGAGCACTCAAGCATCTCAATCTAGCGTTTTT
CTCATCCACCGCGAAGTCCTTGAGAGCTCTCAAAACTACCAGAGGCAGGG
GCTCAGCTCTCGGCGCTCGGATGGCGTCCGAGACAGCTCTCAGGACACCT
TTCTTGCTGGATTTTGAGACATCCGTCTTTAAGAAGGACGCGATATCACT
GGCTGACCGCGATGAGTTCATTGTGAGAGGAGGAAGGGATTTGTTTAAGT
TGCTGCCGGACGCATTCAACGGGATTAACCAGATTGGGGTGATTGGCTGG
GGTTCCCAGGGACCTGCCCAAGCTCAGAATTTGAGGGATTCCCTTGCTGA
AGCTAAATCTGATATTGTTGTCAAGGTTGGGCTTAGGAAGGGCTCTCGTT
CTTTTGCTGAAGCTCGTGCTGCTGGTTTTACTGAAGAGAATGGAACTTTG
GGGGATATATATGAAACTATTTCAGGCAGTGATCTTGTGTTATTGTTGAT
TTCTGATGCTGCTCAGGCAGATAATTATGAGAAGATATTCTCTTGCATGA
AACCAAACAGCATCCTTGGACTTTCCCATGGGTTTCTTCTTGGGCATTTG
CAGTCAATAGGACTTGATTTCCCAAAGAATATCAGTGTGATTGCTGTGTG
TCCCAAGGGAATGGGTCCATCTGTGAGGAGACTCTATGTTCAAGGCAAAG
AGATTAATGGTGCTGGAATTAATTCCAGTTTTGCTGTCCACCAGGATGTT
GATGGAAGAGCTACCAATGTCGCCCTAGGATGGTCAGTTGCCCTTGGTTC
TCCTTTCACATTTGCCACCACATTAGAACAGGAGTACAAGAGTGACATCT
TTGGGGAGCGTGGCTTTCTACTTGGTGCTGTTCATGGAATTGTGGAATCC
TTGTTTAAAAGGTTCCTGAAAAGGGAAAGGATGAGGATCTGGCTTACAGA
ATACCCTGGAAGGGCAAACAAGGAATTAATCCAAAATCTTCTCAATCAGG
GGTATGTTGGCGGTTTAAAATTCCTTCCCTGAAAAAAAAAAAAGGGAATT
TGAAAAAGTTTAATAGGCCTCCAATTAACCCTGGCAGGAAAATTTAAAAA
AGGGGCCTAAAAAAATGGGGGGGCGGGGGGGGGAAAACCCCACGGTTGGT
TTGGGGGGGGGGCCGGGTTTTTTATAAAAAAGAAGGGTTTCCCACCTCTT
TTCCCCCTGGGAAAAAAAAATAAGAATAATAACCCCCGCG
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