DY262550

Overview
NameDY262550
Unique NameDY262550
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1290
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_METPE (Ketol-acid reductoisomerase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=ilvC PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.250e-19
Identity = 69/213 (32.39%), Postives = 109/213 (51.17%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFK 959
            QI VIG+GSQG  QA NLRD      S + V +GLR G RSF +A   GF      +  + + +  +D++ +L+ D +Q   Y+ +I   +                 Q +    P N+ V+ V PKG G  VRR + +GK     G+ +  A+ QD  G A  +ALG++  +G+     F TT  +E ++D+FGE+  L G V  ++++ F+
Sbjct:   19 QIAVIGYGSQGRGQALNLRD------SGLSVIIGLRPG-RSFQQASEDGF-----EVFPVADAVKKADIIQILLPDESQGAVYKTEIRPYLADKKCLMFSHGFNIHYGQIVP---PPNVDVVMVAPKGPGHMVRRTFEEGK-----GVPALIAIEQDYTGDAQAIALGYAKGIGATRAVVFETTFREETETDLFGEQAVLCGGVTSLIKAGFE 211          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_METFK (Ketol-acid reductoisomerase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=ilvC PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.250e-19
Identity = 67/217 (30.88%), Postives = 114/217 (52.53%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP--FTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ ++G+GSQG A AQNL+DS       + V +G RK   SFA+A  AG   +     +I E ++G+D+V++L+ D   A+ Y  +I   +K  +             Q +     K++ VI + PKG G +VR  Y++G      G+ S  AV+QD  G+A ++AL ++ A G        T   +E ++D+FGE+  L G    +V++ F+  ++
Sbjct:   18 KVTIVGYGSQGHAHAQNLKDS------GVNVTIGARKEGSSFAKAVNAGHEVK-----EIKEAVTGADVVMVLLPDETMAEIYHAEIEPNLKKGAALAFAHGFNIHYNQIVP---SKDLDVIMIAPKGPGHTVRSEYLKG-----GGVPSLIAVYQDASGKAKDIALSYAAANGGTKGGVIETNFREETETDLFGEQAVLCGGAVELVKAGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_LEPBL (Ketol-acid reductoisomerase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=ilvC PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.250e-19
Identity = 71/216 (32.87%), Postives = 110/216 (50.93%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIF--SCMKPNSIXXXXXXXXXXXXQSIGLDF---PKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFK 959
            I VIG+GSQG AQAQN++D      S + V +GL++GS+S  +A+ AGF      +  + E    +D++ +L  D  QAD Y+K    +  K N++             +I  DF   P+ + V  V PKG G  VRR+Y +     G G+    AVHQD  G A   AL  +  +G        T+  +E ++D+FGE+  L G +  ++ + F+
Sbjct:   20 IAVIGYGSQGHAQAQNMKD------SGLKVIIGLKEGSKSIQDAKNAGF-----EVYSVAEASQKADVIQILAPDTIQADLYKKDIEPNLKKGNALVFSHGF-------NIHYDFIKPPEEVDVYMVAPKGPGHLVRRVYTE-----GGGVPCLIAVHQDSTGEAKKRALAHAAGVGGGRAGILETSFREETETDLFGEQVVLCGGLSNLIMAGFE 212          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_LEPBJ (Ketol-acid reductoisomerase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=ilvC PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.250e-19
Identity = 71/216 (32.87%), Postives = 110/216 (50.93%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIF--SCMKPNSIXXXXXXXXXXXXQSIGLDF---PKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFK 959
            I VIG+GSQG AQAQN++D      S + V +GL++GS+S  +A+ AGF      +  + E    +D++ +L  D  QAD Y+K    +  K N++             +I  DF   P+ + V  V PKG G  VRR+Y +     G G+    AVHQD  G A   AL  +  +G        T+  +E ++D+FGE+  L G +  ++ + F+
Sbjct:   20 IAVIGYGSQGHAQAQNMKD------SGLKVIIGLKEGSKSIQDAKNAGF-----EVYSVAEASQKADVIQILAPDTIQADLYKKDIEPNLKKGNALVFSHGF-------NIHYDFIKPPEEVDVYMVAPKGPGHLVRRVYTE-----GGGVPCLIAVHQDSTGEAKKRALAHAAGVGGGRAGILETSFREETETDLFGEQVVLCGGLSNLIMAGFE 212          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_DESDG (Ketol-acid reductoisomerase OS=Desulfovibrio desulfuricans (strain G20) GN=ilvC PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.250e-19
Identity = 67/220 (30.45%), Postives = 109/220 (49.55%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDF-----PKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            + +IG+GSQG A AQNLRD      S + V VG R G  +F  A+  GF   +       E  + +DL+++L+ D  QA  YE   + +KP+                  + F     PK++ V  + PKG G  VRR Y +     G G+    A+HQD  G+A   AL +++ +G   +    TT  +E ++D+FGE+  L G +  ++++ F+  ++
Sbjct:   19 VAIIGYGSQGHAHAQNLRD------SGVNVIVGQRPGGPNFELAKEHGFQPLSAA-----EAAAQADLIMILLPDQYQASVYE---NDIKPH----LTAGKSLVFAHGFNIHFNQIVPPKDVDVFMIAPKGPGHLVRRTYTE-----GGGVPCLVAIHQDASGQAMEKALAYAMGVGGTRSGVIETTFREETETDLFGEQAVLCGGISALIQAGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_NITOC (Ketol-acid reductoisomerase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=ilvC PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 4.244e-19
Identity = 74/217 (34.10%), Postives = 108/217 (49.77%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ +IG+GSQG A A NL+DS       + V VGLR GS S A+A  AG T     +  I   I  +DL ++L  D  Q+  Y E I   +K N+             Q   ++   ++ VI V PKG G  VR  Y QG      G+ S  AVHQDV  +A  +AL ++ A G        T   +E ++D+FGE+  L G V  +V++ F+  ++
Sbjct:   18 RVAIIGYGSQGHAHANNLKDS------GVDVVVGLRSGSTSVAKAENAGLT-----VLPIEAAIKEADLAMILAPDEHQSKLYQEDIEPHLKQNATLAFAHGFNIHFRQ---IEPRADLDVIMVAPKGPGHLVRSTYTQG-----GGVPSLIAVHQDVSTKAREIALSYAAANGGGRAGIIETAFREETETDLFGEQVVLCGGVTALVQAGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_METAC (Ketol-acid reductoisomerase OS=Methanosarcina acetivorans GN=ilvC PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 4.244e-19
Identity = 65/212 (30.66%), Postives = 111/212 (52.36%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFK 959
            I ++G+GSQG A A+NL +S       + V VGLRKGS S+A+A + G       +  + E    +D++++L+ D  QA   Y +I   ++  +             Q +    PK++ V  V PKG G  VRR Y +     G G+    AV+QD  G+A ++AL ++  +G+     + TT  +E ++D+FGE+  L G +  ++++ F+
Sbjct:   20 IAIMGYGSQGHAHARNLHES------GLNVVVGLRKGSSSWAKAESDGLK-----VMTVEEAAKAADVIMILLPDEKQASVYYSQIEPSLEAGNALVFAHGFNIHYNQIVP---PKDVDVFMVAPKGPGHIVRRTYTE-----GIGVPGLIAVYQDATGKARDLALAYAKGIGATRAGVYETTFREETETDLFGEQVDLCGGLSALIKTAFE 212          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_CHRVO (Ketol-acid reductoisomerase OS=Chromobacterium violaceum GN=ilvC PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 4.244e-19
Identity = 68/217 (31.34%), Postives = 114/217 (52.53%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP--FTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ +IG+GSQG A AQNL++S       + V VGLRK   S+ +A AAG   +     ++ E +  +D+V++L+ D +Q + Y K I   +K  +             Q +    P ++ VI V PKG G +VR  Y++G      G+ +  AV+QD  G+A +VAL ++ A G        T   +E ++D+FGE+  L G    +V++ F+  ++
Sbjct:   18 KVAIIGYGSQGHAHAQNLKES------GVDVIVGLRKDGASWKKAEAAGHKVK-----EVAEAVKKADVVMILLPDESQPEVYHKDIAPNLKKGAALAFAHGFNIHYNQIVP---PADVDVIMVAPKGPGHTVRSEYLKG-----GGVPTLIAVYQDKTGKARDVALSYAAANGGTKGGVIETNFREETETDLFGEQAVLCGGAVELVKAGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_XYLFT (Ketol-acid reductoisomerase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=ilvC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.543e-19
Identity = 75/217 (34.56%), Postives = 112/217 (51.61%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            +I +IG+GSQG A A NLRDS      DI+  VGLR G  + A+A+A GFT ++       +    +DLV +L  D  Q   YE++   + PN                  L  P+ ++ V+ V PKG G  VRR Y    EI G G+   +AVHQD+   A  +AL ++  LG        TT ++E ++D+FGE+  L G V  +V++ F+  ++
Sbjct:   24 KIAIIGYGSQGRAHALNLRDS----GFDII--VGLRPGGATEAKAQADGFTVQSPD-----QAAKHADLVAVLTPDMVQKKLYEEV---LAPNIKQGACLLFAHGLNVHYSLITPRSDLDVVLVAPKGPGALVRREY----EI-GRGVPCIYAVHQDLSSHAEQLALTYAGGLGGARANIIKTTFKEETETDLFGEQAVLCGGVSSLVQAGFETLVE 221          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_LEPIN (Ketol-acid reductoisomerase OS=Leptospira interrogans GN=ilvC PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 5.543e-19
Identity = 70/214 (32.71%), Postives = 109/214 (50.93%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDF---PKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFK 959
            I VIG+GSQG AQAQN++D      S + V +GL++GS+S  +A+ AGF      +  + E    +D++ +L  D  QAD Y+K    ++PN               +I  DF   PK + V  V PKG G  VRR+Y +     G G+    A++QD  G A   AL  +  +G        T+  +E ++D+FGE+  L G +  ++ + F+
Sbjct:   20 IAVIGYGSQGHAQAQNMKD------SGLKVIIGLKEGSKSIQDAKNAGF-----EVYSVSEASQKADIIQILAPDTIQADLYKK---DIEPN--LKKGDALVFSHGFNIHYDFIKPPKEVDVYMVAPKGPGHLVRRVYTE-----GGGVPCLIAIYQDSSGEAKKRALAHAAGVGGGRAGILETSFREETETDLFGEQVVLCGGLSNLIMAGFE 212          
The following BLAST results are available for this feature:
BLAST of DY262550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ILVC_METPE3.250e-1932.39Ketol-acid reductoisomerase OS=Methanosphaerula pa... [more]
ILVC_METFK3.250e-1930.88Ketol-acid reductoisomerase OS=Methylobacillus fla... [more]
ILVC_LEPBL3.250e-1932.87Ketol-acid reductoisomerase OS=Leptospira borgpete... [more]
ILVC_LEPBJ3.250e-1932.87Ketol-acid reductoisomerase OS=Leptospira borgpete... [more]
ILVC_DESDG3.250e-1930.45Ketol-acid reductoisomerase OS=Desulfovibrio desul... [more]
ILVC_NITOC4.244e-1934.10Ketol-acid reductoisomerase OS=Nitrosococcus ocean... [more]
ILVC_METAC4.244e-1930.66Ketol-acid reductoisomerase OS=Methanosarcina acet... [more]
ILVC_CHRVO4.244e-1931.34Ketol-acid reductoisomerase OS=Chromobacterium vio... [more]
ILVC_XYLFT5.543e-1934.56Ketol-acid reductoisomerase OS=Xylella fastidiosa ... [more]
ILVC_LEPIN5.543e-1932.71Ketol-acid reductoisomerase OS=Leptospira interrog... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100BB09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262550 ID=DY262550; Name=DY262550; organism=Citrus clementina; type=EST; length=1290bp
CGGGTACTTTACCACTTAGCCCGTCGATCCCCAAATTGAGTCCATCGCCG
TCGTCCGAAACCCTAAAAGGAGCACTCAAGCATCTCAATCTAGCGTTTTT
CTCATCCACCGCGAAGTCCTTGAGAGCTCTCAAAACTACCAGAGGCAGGG
GCTCAGCTCTCGGCGCTCGGATGGCGTCCGAGACAGCTCTCAGGACACCT
TTCTTGCTGGATTTTGAGACATCCGTCTTTAAGAAGGACGCGATATCACT
GGCTGACCGCGATGAGTTCATTGTGAGAGGAGGAAGGGATTTGTTTAAGT
TGCTGCCGGACGCATTCAACGGGATTAACCAGATTGGGGTGATTGGCTGG
GGTTCCCAGGGACCTGCCCAAGCTCAGAATTTGAGGGATTCCCTTGCTGA
AGCTAAATCTGATATTGTTGTCAAGGTTGGGCTTAGGAAGGGCTCTCGTT
CTTTTGCTGAAGCTCGTGCTGCTGGTTTTACTGAAGAGAATGGAACTTTG
GGGGATATATATGAAACTATTTCAGGCAGTGATCTTGTGTTATTGTTGAT
TTCTGATGCTGCTCAGGCAGATAATTATGAGAAGATATTCTCTTGCATGA
AACCAAACAGCATCCTTGGACTTTCCCATGGGTTTCTTCTTGGGCATTTG
CAGTCAATAGGACTTGATTTCCCAAAGAATATCAGTGTGATTGCTGTGTG
TCCCAAGGGAATGGGTCCATCTGTGAGGAGACTCTATGTTCAAGGCAAAG
AGATTAATGGTGCTGGAATTAATTCCAGTTTTGCTGTCCACCAGGATGTT
GATGGAAGAGCTACCAATGTCGCCCTAGGATGGTCAGTTGCCCTTGGTTC
TCCTTTCACATTTGCCACCACATTAGAACAGGAGTACAAGAGTGACATCT
TTGGGGAGCGTGGCTTTCTACTTGGTGCTGTTCATGGAATTGTGGAATCC
TTGTTTAAAAGGTTCCTGAAAAGGGAAAGGATGAGGATCTGGCTTACAGA
ATACCCTGGAAGGGCAAACAAGGAATTAATCCAAAATCTTCTCAATCAGG
GGTATGTTGGCGGTTTAAAATTCCTTCCCTGAAAAAAAAAAAAGGGAATT
TGAAAAAGTTTAATAGGCCTCCAATTAACCCTGGCAGGAAAATTTAAAAA
AGGGGCCTAAAAAAATGGGGGGGCGGGGGGGGGAAAACCCCACGGTTGGT
TTGGGGGGGGGGCCGGGTTTTTTATAAAAAAGAAGGGTTTCCCACCTCTT
TTCCCCCTGGGAAAAAAAAATAAGAATAATAACCCCCGCG
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