DY262550

Overview
NameDY262550
Unique NameDY262550
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1290
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_LEPIC (Ketol-acid reductoisomerase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=ilvC PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 5.543e-19
Identity = 70/214 (32.71%), Postives = 109/214 (50.93%), Query Frame = 3
Query:  333 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDF---PKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFK 959
            I VIG+GSQG AQAQN++D      S + V +GL++GS+S  +A+ AGF      +  + E    +D++ +L  D  QAD Y+K    ++PN               +I  DF   PK + V  V PKG G  VRR+Y +     G G+    A++QD  G A   AL  +  +G        T+  +E ++D+FGE+  L G +  ++ + F+
Sbjct:   20 IAVIGYGSQGHAQAQNMKD------SGLKVIIGLKEGSKSIQDAKNAGF-----EVYSVSEASQKADIIQILAPDTIQADLYKK---DIEPN--LKKGDALVFSHGFNIHYDFIKPPKEVDVYMVAPKGPGHLVRRVYTE-----GGGVPCLIAIYQDSSGEAKKRALAHAAGVGGGRAGILETSFREETETDLFGEQVVLCGGLSNLIMAGFE 212          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_HELAH (Ketol-acid reductoisomerase OS=Helicobacter acinonychis (strain Sheeba) GN=ilvC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.543e-19
Identity = 69/218 (31.65%), Postives = 111/218 (50.92%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            Q+G+IG+G+QG AQA NLRD      S + V+VGL +GS S  +A+A GF      + ++ E +  SD+++ L+ D    +  EK +   +K   I            Q   + F K + VI V PKG G ++R  Y++ K     G+    A+ Q+     A  VAL ++ A+G        T+ ++E +SD+FGE+  L G +  +V   F+  +K
Sbjct:   20 QVGIIGYGTQGEAQALNLRD------SKVKVRVGLYQGSLSIPKAKAEGF-----EVLEVKELVQKSDVIMALLPDELHKEVLEKEVIPFLKEGQIVGFAHGFSVHFNQ---VSFKKGVGVILVAPKGPGSALREEYLKNK-----GLYHLIAIEQENSKNNAKAVALSYAKAMGGGRMGVLETSFKEECESDLFGEQAVLCGGLEAVVRMGFETLIK 218          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_CORK4 (Ketol-acid reductoisomerase OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=ilvC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.543e-19
Identity = 69/213 (32.39%), Postives = 109/213 (51.17%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFK 959
            ++ VIG+GSQG A A+ LRDS  E      V++GLR+GS+S  +A+ AGF   +       E    +DL+++L  D +Q   +EK I   +K                + +    PK ++V  V PKG G  VRR + +GK     G+ S  AV  D  G  T +AL ++ A+G+       TT  +E ++D+FGE+  L G +  ++ + F+
Sbjct:   20 KVAVIGYGSQGHAHAKCLRDSGVE------VRIGLREGSKSAEKAKEAGFEVLSNA-----EAAEWADLIMILAPDTSQIAIFEKEIEPHLKDGDAIFFAHGLNIHFKKIVA---PKGVTVAMVAPKGPGHLVRRQFTEGK-----GVPSLIAVENDPTGEGTALALSYAAAIGAGRAGVIETTFREETETDLFGEQAVLCGGLEKLMMTGFE 213          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_WOLSU (Ketol-acid reductoisomerase OS=Wolinella succinogenes GN=ilvC PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 7.239e-19
Identity = 68/217 (31.34%), Postives = 111/217 (51.15%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIG-LDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ V+G+GSQG A A+NLRDS  E      V +GL KG  S+++A A  F      + ++ E    +D++++LI D  QA+ +E+    + PN                 G +  PK + VI + PK  G +VR  +V+     G GI    AV Q+  G A  + L ++ A+G   T    TT + E ++D+FGE+  L G V  +V++ F+  ++
Sbjct:   20 KVAVVGFGSQGHAHAENLRDSGVE------VVIGLHKGGSSWSKAEAKNF-----KVMEVAEASRYADVIMILIPDELQAEVFER---DILPNLSEGKAIAFGHGFNVHFGQIKAPKGVDVIMIAPKAPGHTVRSEFVK-----GGGIPDLIAVEQNASGIAKEICLSYASAIGGGRTGIIETTFKDETETDLFGEQAVLCGGVTALVKAGFETLVE 217          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_SYNP2 (Ketol-acid reductoisomerase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ilvC PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 7.239e-19
Identity = 68/224 (30.36%), Postives = 114/224 (50.89%), Query Frame = 3
Query:  309 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP--FTFATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            D  NG   + +IG+GSQG A A NL+DS       I V +GL  GS+S A+A A G       +  + E    +D +++L+ D  Q   Y K I   ++  ++            Q +    P ++ V+ V PKG G  VRR Y QG+     G+ + FAV+QD  G+A ++A+ ++  +G        TT  +E ++D+FGE+  L G +  ++++ F+  ++
Sbjct:   13 DLLNG-KTVAIIGYGSQGHAHALNLKDS------GINVVIGLYAGSKSTAKAEAEGLK-----VLPVAEAAKVADWIMILLPDDVQKSVYTKDILPNLQAGNVLSFAHGFNINFGQIVP---PADVDVVMVAPKGPGHLVRRTYEQGQ-----GVPALFAVYQDATGQARDLAMAYAKGIGGTRGGILETTFREETETDLFGEQAVLCGGLSALIKAGFETLVE 216          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_STAHJ (Ketol-acid reductoisomerase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=ilvC PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 7.239e-19
Identity = 70/231 (30.30%), Postives = 119/231 (51.52%), Query Frame = 3
Query:  309 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDF-----PKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            DA  G  +I +IG+GSQG A AQNL+D+  +      V VG+R G  SF +A+  GF        D+Y   E +  +D++++L+ D  Q + Y+     ++PN                  + F     PK++ V  V PKG G  VRR +V+G       + + F V QD  G+A +++L ++  +G+       TT ++E ++D+FGE+  L G +H +++S F+  ++
Sbjct:   13 DALQG-KKIAIIGYGSQGHAHAQNLKDNGYD------VIVGIRPG-HSFDKAKEDGF--------DVYPVAEAVKQADVIMVLLPDEIQGNVYKNE---IEPN----LEAGNALAFAHGFNIHFEVIKPPKDVDVFLVAPKGPGHLVRRTFVEG-----TAVPALFGVQQDATGQARDISLSYAKGIGATRAGVIETTFKEETETDLFGEQAVLCGGIHKLIQSGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_SALRD (Ketol-acid reductoisomerase OS=Salinibacter ruber (strain DSM 13855) GN=ilvC PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 7.239e-19
Identity = 73/213 (34.27%), Postives = 105/213 (49.30%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYKSDIFGERGFLLGAVHGIVESLFK 959
            Q+ VIG+GSQG A A NL D      S + V VGLR GS S  +A   G      T+ DI E  +  D+V+LLI D  Q D YE KI   M P +             +   ++ P+ + V  V PK  G  VRR Y      +G+G+    AV QD  G A  +A+ ++ A+G        TT + E ++D+FGE+  L G    ++++ F+
Sbjct:   16 QVAVIGYGSQGHAHALNLHD------SGVDVAVGLRPGSSSRPKAEQQGL-----TVMDIGEAAAWGDVVMLLIPDQHQKDVYEAKIAEHMTPGTALGFGHGFNIHYDR---IEPPEAVDVFMVAPKSPGHLVRRTYT-----DGSGVPCLAAVDQDPSGGAMALAISYADAIGGTHAGVIETTFKDETETDLFGEQAVLCGGSQALIQAGFE 209          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_PSEU2 (Ketol-acid reductoisomerase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=ilvC PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 7.239e-19
Identity = 70/217 (32.26%), Postives = 111/217 (51.15%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ +IG+GSQG AQA NL+DS       + V VGLRKGS + A+A A G       + D+   ++ +DLV++L  D  Q+  Y+     ++PN                     P+ ++ VI + PK  G +VR  +V+G      GI    AV+QD  G A NVAL ++  +G   T    TT + E ++D+FGE+  L G    +V++ F+  ++
Sbjct:   18 KVAIIGYGSQGHAQACNLKDS------GVDVTVGLRKGSATVAKAEAHGLK-----VTDVASAVAAADLVMILTPDEFQSQLYKNE---VEPNLKKGATLAFSHGFAIHYNQVVPRADLDVIMIAPKAPGHTVRTEFVKG-----GGIPDLIAVYQDASGNAKNVALSYASGVGGGRTGIIETTFKDETETDLFGEQAVLCGGTVELVKAGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_PSESM (Ketol-acid reductoisomerase OS=Pseudomonas syringae pv. tomato GN=ilvC PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 7.239e-19
Identity = 70/217 (32.26%), Postives = 111/217 (51.15%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ +IG+GSQG AQA NL+DS       + V VGLRKGS + A+A A G       + D+   ++ +DLV++L  D  Q+  Y+     ++PN                     P+ ++ VI + PK  G +VR  +V+G      GI    AV+QD  G A NVAL ++  +G   T    TT + E ++D+FGE+  L G    +V++ F+  ++
Sbjct:   18 KVAIIGYGSQGHAQACNLKDS------GVDVTVGLRKGSATVAKAEAHGLK-----VTDVASAVAAADLVMILTPDEFQSQLYKNE---VEPNLKKGATLAFSHGFAIHYNQVVPRADLDVIMIAPKAPGHTVRTEFVKG-----GGIPDLIAVYQDASGNAKNVALSYASGVGGGRTGIIETTFKDETETDLFGEQAVLCGGTVELVKAGFETLVE 215          
BLAST of DY262550 vs. ExPASy Swiss-Prot
Match: ILVC_PSE14 (Ketol-acid reductoisomerase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=ilvC PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 7.239e-19
Identity = 70/217 (32.26%), Postives = 111/217 (51.15%), Query Frame = 3
Query:  330 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYKSDIFGERGFLLGAVHGIVESLFKRFLK 971
            ++ +IG+GSQG AQA NL+DS       + V VGLRKGS + A+A A G       + D+   ++ +DLV++L  D  Q+  Y+     ++PN                     P+ ++ VI + PK  G +VR  +V+G      GI    AV+QD  G A NVAL ++  +G   T    TT + E ++D+FGE+  L G    +V++ F+  ++
Sbjct:   18 KVAIIGYGSQGHAQACNLKDS------GVDVTVGLRKGSATVAKAEAHGLK-----VTDVASAVAAADLVMILTPDEFQSQLYKNE---VEPNLKKGATLAFSHGFAIHYNQVVPRADLDVIMIAPKAPGHTVRTEFVKG-----GGIPDLIAVYQDASGNAKNVALSYASGVGGGRTGIIETTFKDETETDLFGEQAVLCGGTVELVKAGFETLVE 215          
The following BLAST results are available for this feature:
BLAST of DY262550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ILVC_LEPIC5.543e-1932.71Ketol-acid reductoisomerase OS=Leptospira interrog... [more]
ILVC_HELAH5.543e-1931.65Ketol-acid reductoisomerase OS=Helicobacter acinon... [more]
ILVC_CORK45.543e-1932.39Ketol-acid reductoisomerase OS=Corynebacterium kro... [more]
ILVC_WOLSU7.239e-1931.34Ketol-acid reductoisomerase OS=Wolinella succinoge... [more]
ILVC_SYNP27.239e-1930.36Ketol-acid reductoisomerase OS=Synechococcus sp. (... [more]
ILVC_STAHJ7.239e-1930.30Ketol-acid reductoisomerase OS=Staphylococcus haem... [more]
ILVC_SALRD7.239e-1934.27Ketol-acid reductoisomerase OS=Salinibacter ruber ... [more]
ILVC_PSEU27.239e-1932.26Ketol-acid reductoisomerase OS=Pseudomonas syringa... [more]
ILVC_PSESM7.239e-1932.26Ketol-acid reductoisomerase OS=Pseudomonas syringa... [more]
ILVC_PSE147.239e-1932.26Ketol-acid reductoisomerase OS=Pseudomonas syringa... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100BB09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262550 ID=DY262550; Name=DY262550; organism=Citrus clementina; type=EST; length=1290bp
CGGGTACTTTACCACTTAGCCCGTCGATCCCCAAATTGAGTCCATCGCCG
TCGTCCGAAACCCTAAAAGGAGCACTCAAGCATCTCAATCTAGCGTTTTT
CTCATCCACCGCGAAGTCCTTGAGAGCTCTCAAAACTACCAGAGGCAGGG
GCTCAGCTCTCGGCGCTCGGATGGCGTCCGAGACAGCTCTCAGGACACCT
TTCTTGCTGGATTTTGAGACATCCGTCTTTAAGAAGGACGCGATATCACT
GGCTGACCGCGATGAGTTCATTGTGAGAGGAGGAAGGGATTTGTTTAAGT
TGCTGCCGGACGCATTCAACGGGATTAACCAGATTGGGGTGATTGGCTGG
GGTTCCCAGGGACCTGCCCAAGCTCAGAATTTGAGGGATTCCCTTGCTGA
AGCTAAATCTGATATTGTTGTCAAGGTTGGGCTTAGGAAGGGCTCTCGTT
CTTTTGCTGAAGCTCGTGCTGCTGGTTTTACTGAAGAGAATGGAACTTTG
GGGGATATATATGAAACTATTTCAGGCAGTGATCTTGTGTTATTGTTGAT
TTCTGATGCTGCTCAGGCAGATAATTATGAGAAGATATTCTCTTGCATGA
AACCAAACAGCATCCTTGGACTTTCCCATGGGTTTCTTCTTGGGCATTTG
CAGTCAATAGGACTTGATTTCCCAAAGAATATCAGTGTGATTGCTGTGTG
TCCCAAGGGAATGGGTCCATCTGTGAGGAGACTCTATGTTCAAGGCAAAG
AGATTAATGGTGCTGGAATTAATTCCAGTTTTGCTGTCCACCAGGATGTT
GATGGAAGAGCTACCAATGTCGCCCTAGGATGGTCAGTTGCCCTTGGTTC
TCCTTTCACATTTGCCACCACATTAGAACAGGAGTACAAGAGTGACATCT
TTGGGGAGCGTGGCTTTCTACTTGGTGCTGTTCATGGAATTGTGGAATCC
TTGTTTAAAAGGTTCCTGAAAAGGGAAAGGATGAGGATCTGGCTTACAGA
ATACCCTGGAAGGGCAAACAAGGAATTAATCCAAAATCTTCTCAATCAGG
GGTATGTTGGCGGTTTAAAATTCCTTCCCTGAAAAAAAAAAAAGGGAATT
TGAAAAAGTTTAATAGGCCTCCAATTAACCCTGGCAGGAAAATTTAAAAA
AGGGGCCTAAAAAAATGGGGGGGCGGGGGGGGGAAAACCCCACGGTTGGT
TTGGGGGGGGGGCCGGGTTTTTTATAAAAAAGAAGGGTTTCCCACCTCTT
TTCCCCCTGGGAAAAAAAAATAAGAATAATAACCCCCGCG
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