DY262558

Overview
NameDY262558
Unique NameDY262558
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1340
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_NITWN (Peptide methionine sulfoxide reductase msrA OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=msrA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.259e-21
Identity = 54/145 (37.24%), Postives = 82/145 (56.55%), Query Frame = 1
Query:  445 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLER--QQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 873
            A    GCFWG++   +R PGV  T VGY+ G + + +Y +      +H E + V +DP   S+  LL+ F+  HDPTT +RQG D G  YRS I++   EQ++ A+E++       +    +VT++ PA  F+ AE  HQ YL +
Sbjct:    8 AVLAGGCFWGMQALLRRYPGVISTRVGYTGGDVPDATYRN----HGDHAEAIEVNFDPTVTSYRQLLEFFFQIHDPTTEDRQGYDQGLSYRSAIFYTNEEQKRIAEETIAEIDASGLWPGYVVTDVEPAGPFWEAEPEHQDYLER 148          
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA2_RHIME (Peptide methionine sulfoxide reductase msrA 2 OS=Rhizobium meliloti GN=msrA2 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.147e-21
Identity = 58/142 (40.85%), Postives = 77/142 (54.23%), Query Frame = 1
Query:  439 QFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQY 864
            Q+A F  GCFW VE  F  VPGV +T  GY+ G   NP+YED   G   H EVVRV++DP   S+  L+ + +   DPT  + Q  D G  Y + I+     Q   AK    + +  L R IVT +  A KF+ AE+YHQ +
Sbjct:   24 QYAIFAGGCFWCVESDFDAVPGVLETISGYAGGKSANPTYEDYAKG--GHREVVRVKFDPDRVSYAELVGVLFRTTDPTDGDGQFCDRGFAYTTAIHALNERQAMDAKAEKIKAEAELGRPIVTPVEGAAKFWPAEDYHQDF 163          
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_MYCPU (Peptide methionine sulfoxide reductase msrA OS=Mycoplasma pulmonis GN=msrA PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 1.818e-20
Identity = 58/147 (39.46%), Postives = 79/147 (53.74%), Query Frame = 1
Query:  460 GCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKHL 900
            GCFWGVE  FQ+V GV  T+  Y  G      Y++VC G++ H E VRV YD  + + + L  ++    +P +LN+QGND G QYR G+Y Y  +  K   +  E   K   +K   EI   +    AEEYHQ YL K    G+ H+
Sbjct:   10 GCFWGVERYFQKVKGVLDTKACYINGGFEGVKYKEVCEGSS-HVEAVRVIYDNSKITEEDLWKLYLRIINPYSLNKQGNDRGVQYRIGLYSYDKDLLKKFSDLNEAFMKSEGKKNYIEIQKVEDVTLAEEYHQNYLLKNVN-GYCHI 154          
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA2_LACLA (Peptide methionine sulfoxide reductase msrA 2 OS=Lactococcus lactis subsp. lactis GN=msrA2 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.050e-20
Identity = 54/145 (37.24%), Postives = 76/145 (52.41%), Query Frame = 1
Query:  445 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLN--RKIVTEILPAKKFYRAEEYHQQYLAK 873
            A F  GCFW +   F+   G+     GY+ G + NP+YE V    T H E V + +D  + ++ +L++++W   DPT    Q  D G  YR  I+    EQEK AKES  + Q   N    IVT I   +KF+ AE+YHQ +  K
Sbjct:    6 AIFAGGCFWCMVQPFEEREGILSVISGYTGGNVENPTYEQVKKHLTGHTEAVEIIFDNSKITYQSLVELYWTLTDPTDAFGQFEDRGDNYRPVIFVENEEQEKIAKESKAQLQASGNFDSPIVTSIETVQKFWPAEDYHQGFYKK 150          
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_DROME (Peptide methionine sulfoxide reductase OS=Drosophila melanogaster GN=Eip71CD PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.178e-19
Identity = 58/148 (39.19%), Postives = 78/148 (52.70%), Query Frame = 1
Query:  445 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHD---PTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKES-LERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKG 876
            A FG GCFWG E  +    GV +T VGY+ G    P+Y  +     +H EV+ + YDP   SF  LLD+FW  H+    T + R       QY S I ++  EQ++ A  S LE Q++     I TEI   + FY AE YHQ+Y  +G
Sbjct:   42 ATFGMGCFWGAESLYGATRGVLRTTVGYAGGSSDLPTYRKM----GDHTEVLEIDYDPTVISFKELLDLFWNNHEYGLTTPIKR-------QYASLILYHDEEQKQVAHASKLEEQERRAPEIITTEIASKENFYPAEAYHQKYRLQG 178          
The following BLAST results are available for this feature:
BLAST of DY262558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_NITWN1.259e-2137.24Peptide methionine sulfoxide reductase msrA OS=Nit... [more]
MSRA2_RHIME2.147e-2140.85Peptide methionine sulfoxide reductase msrA 2 OS=R... [more]
MSRA_MYCPU1.818e-2039.46Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRA2_LACLA4.050e-2037.24Peptide methionine sulfoxide reductase msrA 2 OS=L... [more]
MSRA_DROME1.178e-1939.19Peptide methionine sulfoxide reductase OS=Drosophi... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100BC06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262558 ID=DY262558; Name=DY262558; organism=Citrus clementina; type=EST; length=1340bp
TGGAAAGAGAATGAGGAAATAATAATATTTTAATTTAAAGTAGCTTGAAA
AAAAATTCAATCCAATCTCGATTGAGCAAATCGACACGAGGTAACTGAAT
TTTCTCAACACGTCTCCAAATCTTTAAAACCAGCAATGGTCTTAAACAAG
TGTCTTTCCATAACCACCACCACCACCACCGTCGCCGCTACCATCTCCAA
ATCGCCACTTCTTCTAATCTCCTCTTCTCTCTCTTCACCAAAGAACCCTC
TTTCTCTCTCTAAACCCAATCCGACCCATTTCCCTATCACTGCCCGACCC
ATTTCCACCCACTACAAGCCCCCCATGAACATCCTCAACAAGCTCGGCTT
CGGCTTCAGGCCCAGCCCCGACCCCGCGTCCACGGAGAACTCCGCCATCG
CTCAGGGCCCCGACGACGACGTTCCGGCCCCCGGTCAGCAGTTTGCCCAG
TTCGGCGCTGGCTGCTTTTGGGGCGTCGAATTGGCGTTCCAGAGAGTGCC
AGGTGTCACCAAGACCGAAGTTGGGTACAGCCAAGGCTACTTGCATAACC
CTAGCTACGAGGACGTGTGCAGTGGGACTACCAATCATAATGAAGTTGTT
AGGGTTCAGTATGATCCTAAGGAGTGTAGTTTCGATACTTTGCTTGATAT
GTTTTGGGCTCGCCATGATCCTACCACGCTTAATCGGCAGGGTAATGATG
TTGGAACACAGTACAGATCTGGAATTTATTTTTACACTCCTGAGCAAGAG
AAGGCAGCCAAGGAGTCCTTGGAGAGACAGCAGAAGGTCTTGAACAGGAA
AATTGTCACCGAAATCCTACCTGCCAAGAAGTTCTACCGAGCTGAGGAAT
ACCACCAGCAGTATCTTGCAAAAGGGGGTCGATTTGGATTCAAACATCTA
CTGAGAAAGGCTGCAATGATCCTATCAGGTGCTATGGCTAAATAGTACCC
TGCTATTACAGTTAATTTTCAGCTTTTTTCTGAATTCTAACCAATAATAC
TTGCATTCTTGCTATGATAAGAATGCCAAATGTATTTAGTGTCTGACCCT
GGGGTATGTAACTATCATAGTTCCTTTAAACCATCATCTAAATCTGTTAT
TTCCCCTGGTCCTGTTTTTTTAAAGGTTTAAGTAAAACCTTTCAAAAATT
TTCGGAAAATTGGTTGGGTAAAATATGGAAAACGGGTGTTTTTTTTTTCC
TACAAAAAACCCAAAGGGGGGGCTTCTCTAAATTAGAAAAGAAACCTCTC
TAATTTTAAAAAATTTTTCCGGTTCTTTTTTTTCTCCTCCTCTCCCTTTT
TTCTCTTCTTTTTTTTTTCTTCTAACTAATCTCCTTTGGG
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