DY262558

Overview
NameDY262558
Unique NameDY262558
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1340
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_ECO45 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.339e-39
Identity = 89/177 (50.28%), Postives = 109/177 (61.58%), Query Frame = 1
Query:  358 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 873
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_ECO24 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.339e-39
Identity = 89/177 (50.28%), Postives = 109/177 (61.58%), Query Frame = 1
Query:  358 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 873
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_SALTY (Peptide methionine sulfoxide reductase msrA OS=Salmonella typhimurium GN=msrA PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.749e-39
Identity = 89/177 (50.28%), Postives = 108/177 (61.02%), Query Frame = 1
Query:  358 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 873
            R +P P +T + A+ +    +VPA G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL  FW  HDPT   +QGND GTQYRS IY  TPEQ  AA  S ER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:   19 RNTPMPIATLH-AVNEHSMTNVPA-GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVISYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMTAAGDHRPITTEIAHATPFYYAEDEHQQYLHK 193          
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_SALNS (Peptide methionine sulfoxide reductase msrA OS=Salmonella newport (strain SL254) GN=msrA PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.749e-39
Identity = 89/177 (50.28%), Postives = 108/177 (61.02%), Query Frame = 1
Query:  358 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 873
            R +P P +T + A+ +    +VPA G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL  FW  HDPT   +QGND GTQYRS IY  TPEQ  AA  S ER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:   19 RNTPMPIATLH-AVNEHSMTNVPA-GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVISYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMTAAGDHRPITTEIAHATPFYYAEDEHQQYLHK 193          
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_MAGSA (Peptide methionine sulfoxide reductase msrA OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=msrA PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.749e-39
Identity = 84/158 (53.16%), Postives = 101/158 (63.92%), Query Frame = 1
Query:  433 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK--GGRFG 888
            G + A FG GCFWG E  F +  GV  T VGY+ G+  NP+YE+VCS  T H E V V +DP E S+  LL +FW  H+PT   RQGND+GTQYRS IY+ TPEQ+ AA+ S +   + L R     I TEI PA +FY AE YHQQYLAK  GG  G
Sbjct:   45 GMEVACFGMGCFWGAERLFWKTGGVYSTSVGYTGGFTLNPTYEEVCSAQTGHTEAVLVAFDPAEVSYTALLRLFWEGHNPTQGMRQGNDIGTQYRSAIYWTTPEQQAAAEASAKAYGEALRRAGFGAITTEIAPAGRFYWAEGYHQQYLAKEPGGYCG 202          
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_SHIDS (Peptide methionine sulfoxide reductase msrA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=msrA PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 2.983e-39
Identity = 88/177 (49.72%), Postives = 109/177 (61.58%), Query Frame = 1
Query:  358 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 873
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++P V  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R+I TEI  A  FY AE+ HQQYL K
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLPSVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQIFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRRITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_RHORT (Peptide methionine sulfoxide reductase msrA OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=msrA PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 2.983e-39
Identity = 77/145 (53.10%), Postives = 99/145 (68.28%), Query Frame = 1
Query:  445 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLER--QQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 873
            A F AGCFWGVE  F+++PGVT T VGY+ G+   P+Y  VC+G T H E VRV YDP + +++ LLD+FWA HDPT ++RQG D+G QYRS I+++   QE AA  S  R  Q   L+R I T I PA  F+ AEEYHQ+Y+ K
Sbjct:    4 ATFAAGCFWGVEETFRKIPGVTGTTVGYTGGHFKEPTYRQVCAGDTGHAEAVRVDYDPDKVTYEQLLDVFWAAHDPTQVDRQGPDIGDQYRSAIFYHDAGQEAAAGASRARLEQSGALSRAIATRIEPAGPFWPAEEYHQRYIDK 148          
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_ECOL5 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 2.983e-39
Identity = 88/177 (49.72%), Postives = 109/177 (61.58%), Query Frame = 1
Query:  358 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 873
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP    RQGND  TQYRS IY  TPEQ+ AA+ SLER Q  +     +R+I TEI  A  FY AE+ HQQYL K
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHSTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRRITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_SALSV (Peptide methionine sulfoxide reductase msrA OS=Salmonella schwarzengrund (strain CVM19633) GN=msrA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 3.895e-39
Identity = 88/177 (49.72%), Postives = 108/177 (61.02%), Query Frame = 1
Query:  358 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 873
            R +P P +T + A+ +    +VPA G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP    ++ LL +FW  HDPT   +QGND GTQYRS IY  TPEQ  AA  S ER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:   19 RNTPMPIATLH-AVNEHSMTNVPA-GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQIFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQSAAAHASRERFQSAMAAAGNHRPITTEITHATPFYYAEDEHQQYLHK 193          
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_SALTI (Peptide methionine sulfoxide reductase msrA OS=Salmonella typhi GN=msrA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 6.645e-39
Identity = 88/177 (49.72%), Postives = 107/177 (60.45%), Query Frame = 1
Query:  358 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 873
            R +P P +T + A+ +    +VPA G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP    ++ LL  FW  HDPT   +QGND GTQYRS IY  TPEQ  AA  S ER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:   19 RNTPMPIATLH-AVNEHSMTNVPA-GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMAAAGDHRPITTEIAHATPFYYAEDEHQQYLHK 193          
The following BLAST results are available for this feature:
BLAST of DY262558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_ECO451.339e-3950.28Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO241.339e-3950.28Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_SALTY1.749e-3950.28Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALNS1.749e-3950.28Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_MAGSA1.749e-3953.16Peptide methionine sulfoxide reductase msrA OS=Mag... [more]
MSRA_SHIDS2.983e-3949.72Peptide methionine sulfoxide reductase msrA OS=Shi... [more]
MSRA_RHORT2.983e-3953.10Peptide methionine sulfoxide reductase msrA OS=Rho... [more]
MSRA_ECOL52.983e-3949.72Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_SALSV3.895e-3949.72Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALTI6.645e-3949.72Peptide methionine sulfoxide reductase msrA OS=Sal... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100BC06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262558 ID=DY262558; Name=DY262558; organism=Citrus clementina; type=EST; length=1340bp
TGGAAAGAGAATGAGGAAATAATAATATTTTAATTTAAAGTAGCTTGAAA
AAAAATTCAATCCAATCTCGATTGAGCAAATCGACACGAGGTAACTGAAT
TTTCTCAACACGTCTCCAAATCTTTAAAACCAGCAATGGTCTTAAACAAG
TGTCTTTCCATAACCACCACCACCACCACCGTCGCCGCTACCATCTCCAA
ATCGCCACTTCTTCTAATCTCCTCTTCTCTCTCTTCACCAAAGAACCCTC
TTTCTCTCTCTAAACCCAATCCGACCCATTTCCCTATCACTGCCCGACCC
ATTTCCACCCACTACAAGCCCCCCATGAACATCCTCAACAAGCTCGGCTT
CGGCTTCAGGCCCAGCCCCGACCCCGCGTCCACGGAGAACTCCGCCATCG
CTCAGGGCCCCGACGACGACGTTCCGGCCCCCGGTCAGCAGTTTGCCCAG
TTCGGCGCTGGCTGCTTTTGGGGCGTCGAATTGGCGTTCCAGAGAGTGCC
AGGTGTCACCAAGACCGAAGTTGGGTACAGCCAAGGCTACTTGCATAACC
CTAGCTACGAGGACGTGTGCAGTGGGACTACCAATCATAATGAAGTTGTT
AGGGTTCAGTATGATCCTAAGGAGTGTAGTTTCGATACTTTGCTTGATAT
GTTTTGGGCTCGCCATGATCCTACCACGCTTAATCGGCAGGGTAATGATG
TTGGAACACAGTACAGATCTGGAATTTATTTTTACACTCCTGAGCAAGAG
AAGGCAGCCAAGGAGTCCTTGGAGAGACAGCAGAAGGTCTTGAACAGGAA
AATTGTCACCGAAATCCTACCTGCCAAGAAGTTCTACCGAGCTGAGGAAT
ACCACCAGCAGTATCTTGCAAAAGGGGGTCGATTTGGATTCAAACATCTA
CTGAGAAAGGCTGCAATGATCCTATCAGGTGCTATGGCTAAATAGTACCC
TGCTATTACAGTTAATTTTCAGCTTTTTTCTGAATTCTAACCAATAATAC
TTGCATTCTTGCTATGATAAGAATGCCAAATGTATTTAGTGTCTGACCCT
GGGGTATGTAACTATCATAGTTCCTTTAAACCATCATCTAAATCTGTTAT
TTCCCCTGGTCCTGTTTTTTTAAAGGTTTAAGTAAAACCTTTCAAAAATT
TTCGGAAAATTGGTTGGGTAAAATATGGAAAACGGGTGTTTTTTTTTTCC
TACAAAAAACCCAAAGGGGGGGCTTCTCTAAATTAGAAAAGAAACCTCTC
TAATTTTAAAAAATTTTTCCGGTTCTTTTTTTTCTCCTCCTCTCCCTTTT
TTCTCTTCTTTTTTTTTTCTTCTAACTAATCTCCTTTGGG
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