DY262558

Overview
NameDY262558
Unique NameDY262558
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1340
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_SALPK (Peptide methionine sulfoxide reductase msrA OS=Salmonella paratyphi A (strain AKU_12601) GN=msrA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 6.645e-39
Identity = 88/177 (49.72%), Postives = 107/177 (60.45%), Query Frame = 1 
Query:  358 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 873
            R +P P +T + A+ +    +VPA G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP    ++ LL  FW  HDPT   +QGND GTQYRS IY  TPEQ  AA  S ER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:   19 RNTPMPIATLH-AVNEHSMTNVPA-GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMAAAGDHRPITTEIAHATPFYYAEDEHQQYLHK 193
[Close]
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_SALPC (Peptide methionine sulfoxide reductase msrA OS=Salmonella paratyphi C (strain RKS4594) GN=msrA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 6.645e-39
Identity = 88/177 (49.72%), Postives = 107/177 (60.45%), Query Frame = 1 
Query:  358 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 873
            R +P P +T + A+ +    +VPA G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP    ++ LL  FW  HDPT   +QGND GTQYRS IY  TPEQ  AA  S ER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:   19 RNTPMPIATLH-AVNEHSMTNVPA-GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMAAAGDHRPITTEIAHATPFYYAEDEHQQYLHK 193
[Close]
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_SALPA (Peptide methionine sulfoxide reductase msrA OS=Salmonella paratyphi A GN=msrA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 6.645e-39
Identity = 88/177 (49.72%), Postives = 107/177 (60.45%), Query Frame = 1 
Query:  358 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 873
            R +P P +T + A+ +    +VPA G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP    ++ LL  FW  HDPT   +QGND GTQYRS IY  TPEQ  AA  S ER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:   19 RNTPMPIATLH-AVNEHSMTNVPA-GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMAAAGDHRPITTEIAHATPFYYAEDEHQQYLHK 193
[Close]
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_SALHS (Peptide methionine sulfoxide reductase msrA OS=Salmonella heidelberg (strain SL476) GN=msrA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 6.645e-39
Identity = 88/177 (49.72%), Postives = 107/177 (60.45%), Query Frame = 1 
Query:  358 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 873
            R +P P +T + A+ +    +VPA G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP    ++ LL  FW  HDPT   +QGND GTQYRS IY  TPEQ  AA  S ER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:   19 RNTPMPIATLH-AVNEHSMTNVPA-GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMAAAGDHRPITTEIAHATPFYYAEDEHQQYLHK 193
[Close]
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_SALG2 (Peptide methionine sulfoxide reductase msrA OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=msrA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 6.645e-39
Identity = 88/177 (49.72%), Postives = 107/177 (60.45%), Query Frame = 1 
Query:  358 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 873
            R +P P +T + A+ +    +VPA G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP    ++ LL  FW  HDPT   +QGND GTQYRS IY  TPEQ  AA  S ER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:   19 RNTPMPIATLH-AVNEHSMTNVPA-GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMAAAGDHRPITTEIAHATPFYYAEDEHQQYLHK 193
[Close]
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_SALEP (Peptide methionine sulfoxide reductase msrA OS=Salmonella enteritidis PT4 (strain P125109) GN=msrA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 6.645e-39
Identity = 88/177 (49.72%), Postives = 107/177 (60.45%), Query Frame = 1 
Query:  358 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 873
            R +P P +T + A+ +    +VPA G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP    ++ LL  FW  HDPT   +QGND GTQYRS IY  TPEQ  AA  S ER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:   19 RNTPMPIATLH-AVNEHSMTNVPA-GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMAAAGDHRPITTEIAHATPFYYAEDEHQQYLHK 193
[Close]
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_SALDC (Peptide methionine sulfoxide reductase msrA OS=Salmonella dublin (strain CT_02021853) GN=msrA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 6.645e-39
Identity = 88/177 (49.72%), Postives = 107/177 (60.45%), Query Frame = 1 
Query:  358 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 873
            R +P P +T + A+ +    +VPA G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP    ++ LL  FW  HDPT   +QGND GTQYRS IY  TPEQ  AA  S ER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:   19 RNTPMPIATLH-AVNEHSMTNVPA-GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMAAAGDHRPITTEIAHATPFYYAEDEHQQYLHK 193
[Close]
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_SALCH (Peptide methionine sulfoxide reductase msrA OS=Salmonella choleraesuis GN=msrA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 6.645e-39
Identity = 88/177 (49.72%), Postives = 107/177 (60.45%), Query Frame = 1 
Query:  358 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 873
            R +P P +T + A+ +    +VPA G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP    ++ LL  FW  HDPT   +QGND GTQYRS IY  TPEQ  AA  S ER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:   19 RNTPMPIATLH-AVNEHSMTNVPA-GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMAAAGDHRPITTEIAHATPFYYAEDEHQQYLHK 193
[Close]
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_PSEMY (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas mendocina (strain ymp) GN=msrA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 6.645e-39
Identity = 92/183 (50.27%), Postives = 108/183 (59.02%), Query Frame = 1 
Query:  358 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK--GGRFG 888
            R  P P + ++           PAP QQ A FG GCFWG E  F + PGV  T VGY+ G+  NP+YE+VCSG T H EVV V +DP++ SFD LL +FW  H+PT   RQGND GTQYRS IY     Q +AA  S  R Q  L++     I TEI  A  FY AE YHQQYLAK  GG  G
Sbjct:   24 RAEPLPVAQQHHVNGNPIKPPFPAPMQQ-AVFGLGCFWGAERRFWQQPGVFSTAVGYAGGFTPNPTYEEVCSGLTGHTEVVLVVFDPQQTSFDALLKVFWEAHNPTQGMRQGNDQGTQYRSAIYCQDHAQLEAALASQARFQAELDKAGLGSITTEICEAPIFYYAETYHQQYLAKNPGGYCG 205
[Close]
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_ESCF3 (Peptide methionine sulfoxide reductase msrA OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=msrA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 6.645e-39
Identity = 87/177 (49.15%), Postives = 108/177 (61.02%), Query Frame = 1 
Query:  358 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 873
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ S ER Q  +     +R + TEI  A  FY AE+ HQQYL K
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGETGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDSAARASRERFQAAMIAANDDRPVTTEIANATPFYYAEDDHQQYLHK 193
The following BLAST results are available for this feature:
BLAST of DY262558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_SALPK6.645e-3949.72Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALPC6.645e-3949.72Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALPA6.645e-3949.72Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALHS6.645e-3949.72Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALG26.645e-3949.72Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALEP6.645e-3949.72Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALDC6.645e-3949.72Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALCH6.645e-3949.72Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_PSEMY6.645e-3950.27Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_ESCF36.645e-3949.15Peptide methionine sulfoxide reductase msrA OS=Esc... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100BC06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262558 ID=DY262558; Name=DY262558; organism=Citrus clementina; type=EST; length=1340bp
TGGAAAGAGAATGAGGAAATAATAATATTTTAATTTAAAGTAGCTTGAAA
AAAAATTCAATCCAATCTCGATTGAGCAAATCGACACGAGGTAACTGAAT
TTTCTCAACACGTCTCCAAATCTTTAAAACCAGCAATGGTCTTAAACAAG
TGTCTTTCCATAACCACCACCACCACCACCGTCGCCGCTACCATCTCCAA
ATCGCCACTTCTTCTAATCTCCTCTTCTCTCTCTTCACCAAAGAACCCTC
TTTCTCTCTCTAAACCCAATCCGACCCATTTCCCTATCACTGCCCGACCC
ATTTCCACCCACTACAAGCCCCCCATGAACATCCTCAACAAGCTCGGCTT
CGGCTTCAGGCCCAGCCCCGACCCCGCGTCCACGGAGAACTCCGCCATCG
CTCAGGGCCCCGACGACGACGTTCCGGCCCCCGGTCAGCAGTTTGCCCAG
TTCGGCGCTGGCTGCTTTTGGGGCGTCGAATTGGCGTTCCAGAGAGTGCC
AGGTGTCACCAAGACCGAAGTTGGGTACAGCCAAGGCTACTTGCATAACC
CTAGCTACGAGGACGTGTGCAGTGGGACTACCAATCATAATGAAGTTGTT
AGGGTTCAGTATGATCCTAAGGAGTGTAGTTTCGATACTTTGCTTGATAT
GTTTTGGGCTCGCCATGATCCTACCACGCTTAATCGGCAGGGTAATGATG
TTGGAACACAGTACAGATCTGGAATTTATTTTTACACTCCTGAGCAAGAG
AAGGCAGCCAAGGAGTCCTTGGAGAGACAGCAGAAGGTCTTGAACAGGAA
AATTGTCACCGAAATCCTACCTGCCAAGAAGTTCTACCGAGCTGAGGAAT
ACCACCAGCAGTATCTTGCAAAAGGGGGTCGATTTGGATTCAAACATCTA
CTGAGAAAGGCTGCAATGATCCTATCAGGTGCTATGGCTAAATAGTACCC
TGCTATTACAGTTAATTTTCAGCTTTTTTCTGAATTCTAACCAATAATAC
TTGCATTCTTGCTATGATAAGAATGCCAAATGTATTTAGTGTCTGACCCT
GGGGTATGTAACTATCATAGTTCCTTTAAACCATCATCTAAATCTGTTAT
TTCCCCTGGTCCTGTTTTTTTAAAGGTTTAAGTAAAACCTTTCAAAAATT
TTCGGAAAATTGGTTGGGTAAAATATGGAAAACGGGTGTTTTTTTTTTCC
TACAAAAAACCCAAAGGGGGGGCTTCTCTAAATTAGAAAAGAAACCTCTC
TAATTTTAAAAAATTTTTCCGGTTCTTTTTTTTCTCCTCCTCTCCCTTTT
TTCTCTTCTTTTTTTTTTCTTCTAACTAATCTCCTTTGGG
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