DY262558

Overview
NameDY262558
Unique NameDY262558
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1340
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_RHOCS (Peptide methionine sulfoxide reductase msrA OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=msrA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.637e-37
Identity = 86/173 (49.71%), Postives = 101/173 (58.38%), Query Frame = 1
Query:  370 DPASTENSAIAQGPDDDVPAP-GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK 873
            +P    N     G     P P G + A FG GCFWGVE  F +VPGV  T  GY+ G   NP+YE+VC+G T H EVV V YDP   S+  LL +FW  HDPT   RQGNDVGTQYRS IY  TPEQ + A+ S +     L  +    + TEI  A  FY AE+YHQQYL K
Sbjct:   23 EPLPVGNIHAVNGHPLKPPFPAGLETAVFGMGCFWGVERKFWQVPGVYSTAAGYAGGPTPNPTYEEVCTGRTGHAEVVLVVYDPATVSYAELLKVFWENHDPTQGMRQGNDVGTQYRSAIYATTPEQLRLAEASRDSYASRLKAQGYGAVTTEIREAPAFYYAEDYHQQYLHK 195          
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_HUMAN (Peptide methionine sulfoxide reductase OS=Homo sapiens GN=MSRA PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.637e-37
Identity = 80/151 (52.98%), Postives = 98/151 (64.90%), Query Frame = 1
Query:  433 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK 873
            G Q A FG GCFWG E  F  + GV  T+VG++ GY  NP+Y++VCS  T H EVVRV Y P+  SF+ LL +FW  HDPT   RQGND GTQYRS IY  + +Q +AA  S E  QKVL+      I T+I   + FY AE+YHQQYL+K
Sbjct:   64 GTQMAVFGMGCFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEVCSEKTGHAEVVRVVYQPEHMSFEELLKVFWENHDPTQGMRQGNDHGTQYRSAIYPTSAKQMEAALSSKENYQKVLSEHGFGPITTDIREGQTFYYAEDYHQQYLSK 214          
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_FRASN (Peptide methionine sulfoxide reductase msrA OS=Frankia sp. (strain EAN1pec) GN=msrA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.637e-37
Identity = 81/150 (54.00%), Postives = 95/150 (63.33%), Query Frame = 1
Query:  433 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLA 870
            G + A FG GCFWG E  F +VPGV  T VGY+ G   NP+YE+ CSG T H E V V +DP + SF  LL +FW  HDPT   RQGNDVGTQYRS +Y    +Q  AA  S +  Q+VL      +I TEI PA  FY AEEYHQQYL+
Sbjct:   45 GLRTAVFGMGCFWGAERKFWQVPGVYSTAVGYAGGITPNPTYEEACSGLTGHTEAVLVVFDPAKVSFAELLRVFWEAHDPTQGMRQGNDVGTQYRSAVYTTGEDQAAAALASRDAFQRVLTAAGYPEITTEIAPAGPFYYAEEYHQQYLS 194          
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_METMP (Peptide methionine sulfoxide reductase msrA OS=Methanococcus maripaludis GN=msrA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.137e-37
Identity = 73/141 (51.77%), Postives = 97/141 (68.79%), Query Frame = 1
Query:  451 FGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 873
            FG GCFWG E  F+++ GV  TEVG+  G + NP+Y  VC G + H EVV++ YDP+  S+D LLD+FW  H+PTT N+QG DVG QY S I+++  EQ+  A++SLE+ Q+  + KIVT I  A  FY AEEYHQ+Y  K
Sbjct:    9 FGMGCFWGAEEVFRKINGVVSTEVGFMGGTIKNPTYGQVCRGKSGHIEVVKIDYDPEIISYDELLDLFWNNHNPTTPNKQGWDVGEQYSSYIFYFDDEQKLIAEKSLEKMQENTDLKIVTIIEKAGSFYPAEEYHQKYFMK 149          
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_VIBPA (Peptide methionine sulfoxide reductase msrA OS=Vibrio parahaemolyticus GN=msrA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 2.792e-37
Identity = 79/150 (52.67%), Postives = 99/150 (66.00%), Query Frame = 1
Query:  436 QQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAA-KESLERQQKV---LNRKIVTEILPAKKFYRAEEYHQQYLAK 873
            QQ    G GCFWG E  F ++ GV  T VGY+ G+  NP+YE+VC+G T H EVVRV +D +  S   LL +FW +HDPT   RQGND+GTQYRS IY Y+ +Q++ A K  L+ QQ +   L   I TEI+PA  +Y AE YHQQYLAK
Sbjct:   42 QQQILLGMGCFWGAERLFWQLDGVVSTSVGYAGGFTPNPTYEEVCTGKTGHTEVVRVVFDERVISLAQLLAVFWEKHDPTQGMRQGNDLGTQYRSAIYTYSQDQQEIADKSKLQYQQALEAELRSTITTEIVPAGPYYFAETYHQQYLAK 191          
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_ACIBY (Peptide methionine sulfoxide reductase msrA OS=Acinetobacter baumannii (strain AYE) GN=msrA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 2.792e-37
Identity = 75/151 (49.67%), Postives = 102/151 (67.55%), Query Frame = 1
Query:  439 QFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGF 891
            Q A FG GCFW VE  F ++ GV K   GY+ G+  +P+YE VC G T H EVV + +D ++ ++  LLD+F+A HDPTTLNRQGND+GTQYRS IY++  EQ++AA+ +++   K  +  IVTE+ PA  FY AE+YHQ Y  K    G+
Sbjct:    2 QQALFGGGCFWCVEAVFLQIRGVEKVTSGYAGGHTTHPTYEQVCQGDTQHAEVVLIDFDEQQVTYSQLLDVFFATHDPTTLNRQGNDIGTQYRSVIYYFNEEQKQAAEHTIQ-TLKDDDLDIVTELSPAPTFYPAEDYHQNYYEKNPSQGY 151          
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_ACIBS (Peptide methionine sulfoxide reductase msrA OS=Acinetobacter baumannii (strain SDF) GN=msrA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 2.792e-37
Identity = 75/151 (49.67%), Postives = 102/151 (67.55%), Query Frame = 1
Query:  439 QFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGF 891
            Q A FG GCFW VE  F ++ GV K   GY+ G+  +P+YE VC G T H EVV + +D ++ ++  LLD+F+A HDPTTLNRQGND+GTQYRS IY++  EQ++AA+ +++   K  +  IVTE+ PA  FY AE+YHQ Y  K    G+
Sbjct:    2 QQALFGGGCFWCVEAVFLQIRGVEKVTSGYAGGHTTHPTYEQVCQGDTQHAEVVLIDFDEQQVTYSQLLDVFFATHDPTTLNRQGNDIGTQYRSVIYYFNEEQKQAAEHTIQ-TLKDDDLDIVTELSPAPTFYPAEDYHQNYYEKNPSQGY 151          
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_ACIBC (Peptide methionine sulfoxide reductase msrA OS=Acinetobacter baumannii (strain ACICU) GN=msrA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 2.792e-37
Identity = 75/151 (49.67%), Postives = 102/151 (67.55%), Query Frame = 1
Query:  439 QFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGF 891
            Q A FG GCFW VE  F ++ GV K   GY+ G+  +P+YE VC G T H EVV + +D ++ ++  LLD+F+A HDPTTLNRQGND+GTQYRS IY++  EQ++AA+ +++   K  +  IVTE+ PA  FY AE+YHQ Y  K    G+
Sbjct:    2 QQALFGGGCFWCVEAVFLQIRGVEKVTSGYAGGHTTHPTYEQVCQGDTQHAEVVLIDFDEQQVTYSQLLDVFFATHDPTTLNRQGNDIGTQYRSVIYYFNEEQKQAAEHTIQ-TLKDDDLDIVTELSPAPTFYPAEDYHQNYYEKNPSQGY 151          
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_ACIB5 (Peptide methionine sulfoxide reductase msrA OS=Acinetobacter baumannii (strain AB0057) GN=msrA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 2.792e-37
Identity = 75/151 (49.67%), Postives = 102/151 (67.55%), Query Frame = 1
Query:  439 QFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGF 891
            Q A FG GCFW VE  F ++ GV K   GY+ G+  +P+YE VC G T H EVV + +D ++ ++  LLD+F+A HDPTTLNRQGND+GTQYRS IY++  EQ++AA+ +++   K  +  IVTE+ PA  FY AE+YHQ Y  K    G+
Sbjct:    2 QQALFGGGCFWCVEAVFLQIRGVEKVTSGYAGGHTTHPTYEQVCQGDTQHAEVVLIDFDEQQVTYSQLLDVFFATHDPTTLNRQGNDIGTQYRSVIYYFNEEQKQAAEHTIQ-TLKDDDLDIVTELSPAPTFYPAEDYHQNYYEKNPSQGY 151          
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_ACIB3 (Peptide methionine sulfoxide reductase msrA OS=Acinetobacter baumannii (strain AB307-0294) GN=msrA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 2.792e-37
Identity = 75/151 (49.67%), Postives = 102/151 (67.55%), Query Frame = 1
Query:  439 QFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGF 891
            Q A FG GCFW VE  F ++ GV K   GY+ G+  +P+YE VC G T H EVV + +D ++ ++  LLD+F+A HDPTTLNRQGND+GTQYRS IY++  EQ++AA+ +++   K  +  IVTE+ PA  FY AE+YHQ Y  K    G+
Sbjct:    2 QQALFGGGCFWCVEAVFLQIRGVEKVTSGYAGGHTTHPTYEQVCQGDTQHAEVVLIDFDEQQVTYSQLLDVFFATHDPTTLNRQGNDIGTQYRSVIYYFNEEQKQAAEHTIQ-TLKDDDLDIVTELSPAPTFYPAEDYHQNYYEKNPSQGY 151          
The following BLAST results are available for this feature:
BLAST of DY262558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_RHOCS1.637e-3749.71Peptide methionine sulfoxide reductase msrA OS=Rho... [more]
MSRA_HUMAN1.637e-3752.98Peptide methionine sulfoxide reductase OS=Homo sap... [more]
MSRA_FRASN1.637e-3754.00Peptide methionine sulfoxide reductase msrA OS=Fra... [more]
MSRA_METMP2.137e-3751.77Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_VIBPA2.792e-3752.67Peptide methionine sulfoxide reductase msrA OS=Vib... [more]
MSRA_ACIBY2.792e-3749.67Peptide methionine sulfoxide reductase msrA OS=Aci... [more]
MSRA_ACIBS2.792e-3749.67Peptide methionine sulfoxide reductase msrA OS=Aci... [more]
MSRA_ACIBC2.792e-3749.67Peptide methionine sulfoxide reductase msrA OS=Aci... [more]
MSRA_ACIB52.792e-3749.67Peptide methionine sulfoxide reductase msrA OS=Aci... [more]
MSRA_ACIB32.792e-3749.67Peptide methionine sulfoxide reductase msrA OS=Aci... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100BC06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262558 ID=DY262558; Name=DY262558; organism=Citrus clementina; type=EST; length=1340bp
TGGAAAGAGAATGAGGAAATAATAATATTTTAATTTAAAGTAGCTTGAAA
AAAAATTCAATCCAATCTCGATTGAGCAAATCGACACGAGGTAACTGAAT
TTTCTCAACACGTCTCCAAATCTTTAAAACCAGCAATGGTCTTAAACAAG
TGTCTTTCCATAACCACCACCACCACCACCGTCGCCGCTACCATCTCCAA
ATCGCCACTTCTTCTAATCTCCTCTTCTCTCTCTTCACCAAAGAACCCTC
TTTCTCTCTCTAAACCCAATCCGACCCATTTCCCTATCACTGCCCGACCC
ATTTCCACCCACTACAAGCCCCCCATGAACATCCTCAACAAGCTCGGCTT
CGGCTTCAGGCCCAGCCCCGACCCCGCGTCCACGGAGAACTCCGCCATCG
CTCAGGGCCCCGACGACGACGTTCCGGCCCCCGGTCAGCAGTTTGCCCAG
TTCGGCGCTGGCTGCTTTTGGGGCGTCGAATTGGCGTTCCAGAGAGTGCC
AGGTGTCACCAAGACCGAAGTTGGGTACAGCCAAGGCTACTTGCATAACC
CTAGCTACGAGGACGTGTGCAGTGGGACTACCAATCATAATGAAGTTGTT
AGGGTTCAGTATGATCCTAAGGAGTGTAGTTTCGATACTTTGCTTGATAT
GTTTTGGGCTCGCCATGATCCTACCACGCTTAATCGGCAGGGTAATGATG
TTGGAACACAGTACAGATCTGGAATTTATTTTTACACTCCTGAGCAAGAG
AAGGCAGCCAAGGAGTCCTTGGAGAGACAGCAGAAGGTCTTGAACAGGAA
AATTGTCACCGAAATCCTACCTGCCAAGAAGTTCTACCGAGCTGAGGAAT
ACCACCAGCAGTATCTTGCAAAAGGGGGTCGATTTGGATTCAAACATCTA
CTGAGAAAGGCTGCAATGATCCTATCAGGTGCTATGGCTAAATAGTACCC
TGCTATTACAGTTAATTTTCAGCTTTTTTCTGAATTCTAACCAATAATAC
TTGCATTCTTGCTATGATAAGAATGCCAAATGTATTTAGTGTCTGACCCT
GGGGTATGTAACTATCATAGTTCCTTTAAACCATCATCTAAATCTGTTAT
TTCCCCTGGTCCTGTTTTTTTAAAGGTTTAAGTAAAACCTTTCAAAAATT
TTCGGAAAATTGGTTGGGTAAAATATGGAAAACGGGTGTTTTTTTTTTCC
TACAAAAAACCCAAAGGGGGGGCTTCTCTAAATTAGAAAAGAAACCTCTC
TAATTTTAAAAAATTTTTCCGGTTCTTTTTTTTCTCCTCCTCTCCCTTTT
TTCTCTTCTTTTTTTTTTCTTCTAACTAATCTCCTTTGGG
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