DY262560

Overview
NameDY262560
Unique NameDY262560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1316
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262560_ssr219 microsatellite DY262560_ssr219:219..230. BLAST: Citrus ESTs to Prunus persica proteins V1
DY262560_ssr688 microsatellite DY262560_ssr688:688..720. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5672 contig Ccv1_Contig5672:309..1622. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL1J_ARATH (RING-H2 finger protein ATL1J OS=Arabidopsis thaliana GN=ATL1J PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.461e-16
Identity = 38/78 (48.72%), Postives = 50/78 (64.10%), Query Frame = 1
Query:  259 PAVTLRAGLDPAILRKIPVVAFNQQDFKDGL--ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRN 486
            P  +   G+    LR  PVV+++++    G+  EC +CLS+   GE+ RLLPKCNHGFHV CID W Q H TCP CR+
Sbjct:  101 PRSSSNKGIKKKALRMFPVVSYSREMNLPGIGEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHHLTCPKCRH 178          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL2H_ARATH (RING-H2 finger protein ATL2H OS=Arabidopsis thaliana GN=ATL2H PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 7.710e-16
Identity = 43/102 (42.16%), Postives = 58/102 (56.86%), Query Frame = 1
Query:  280 GLDPAILRKIPVVAFNQQDFKD-GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEP---SVEIDIQNSQESLES 573
            GLDP I+R  PV  ++    K+ G ECA+CLSE  D +  RL+  C H FH  CID+WF+ H TCP+CR  +D     +G  E    +V I IQ+     E+
Sbjct:   77 GLDPFIIRSFPVFHYSSATKKNHGTECAICLSEFSDEDTVRLITVCRHPFHSNCIDLWFELHKTCPVCRCELDPGMIGSGRLESFHNTVTITIQDINHDEEN 178          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL1A_ARATH (RING-H2 finger protein ATL1A OS=Arabidopsis thaliana GN=ATL1A PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 7.710e-16
Identity = 37/84 (44.05%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  280 GLDPAILRKIPVVAFNQQDF--------KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERS 507
            GLD + +R IPV  F ++D         K+  EC+VCL+E ++ EK R++P C H FH++CID+W Q ++ CPLCR  V  E S
Sbjct:  101 GLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSVSCEAS 184          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL5K_ARATH (RING-H2 finger protein ATL5K OS=Arabidopsis thaliana GN=ATL5K PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.007e-15
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  253 QDPAVT----LRA-GLDPAILRKIPVVAFNQQ-DFKDGL--------------ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERS 507
            QDP +     LR+ GLD +++R IP+  F ++ D  DG+              EC+VCLSE +D EK R++P C+H FH++CID+W Q+++ CPLCR  V  + S
Sbjct:   84 QDPLMVYSPELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVSCDTS 188          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL5A_ARATH (RING-H2 finger protein ATL5A OS=Arabidopsis thaliana GN=ATL5A PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.007e-15
Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 1
Query:  274 RAGLDPAILRKIPVVAFNQQDFK-DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRN 486
            RAGL    L+K PV  +   + K    ECA+CL E  DGE+ R+LP CNH FH+ CID W  SHS+CP CR+
Sbjct:   77 RAGLKKRELKKFPVAEYGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCRH 148          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL1I_ARATH (RING-H2 finger protein ATL1I OS=Arabidopsis thaliana GN=ATL1I PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.007e-15
Identity = 37/78 (47.44%), Postives = 50/78 (64.10%), Query Frame = 1
Query:  259 PAVTLRAGLDPAILRKIPVVAFNQQDFKDGL--ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRN 486
            P  +   G++   LR  PVV+++ +    GL  EC +CLS+   GE+ R+LPKC+HGFHV CID W Q H TCP CR+
Sbjct:  102 PCGSSNKGINKKALRMFPVVSYSPEMNLPGLGEECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTCPKCRH 179          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL4H_ARATH (Putative RING-H2 finger protein ATL4H OS=Arabidopsis thaliana GN=ATL4H PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.315e-15
Identity = 46/117 (39.32%), Postives = 62/117 (52.99%), Query Frame = 1
Query:  277 AGLDPAILRKIPVVAF--NQQDFK-DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPV-----------------DVERSNNGNGEPSVEIDIQNSQESL 567
            AGLD  +++KI       +Q  FK +G +C++CL E  + E  RLLPKCNH FHV CID W +SHS CPLCR  +                 D   SN G+ E +V +D    + S+
Sbjct:  152 AGLDDTLIKKIGFFKLKKHQNGFKINGTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIVPTTQQPEHHVVVMNLDRFTSNVGSAEGNVVVDDHREEVSV 268          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL3C_ARATH (RING-H2 finger protein ATL3C OS=Arabidopsis thaliana GN=ATL3C PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.930e-15
Identity = 39/77 (50.65%), Postives = 49/77 (63.64%), Query Frame = 1
Query:  280 GLDPAILRKIPVVAFNQQ--DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVER 504
            GL    L++IPV  +     D K   EC +CL + EDGEK R+LPKCNHGFHV CID W  S S+CP CR  + +E+
Sbjct:   88 GLKKQALKQIPVGLYGSGIIDMK-ATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQ 163          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL2G_ARATH (RING-H2 finger protein ATL2G OS=Arabidopsis thaliana GN=ATL2G PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.930e-15
Identity = 45/130 (34.62%), Postives = 63/130 (48.46%), Query Frame = 1
Query:  280 GLDPAILRKIPVVAFNQQDF----KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEI------DIQNSQESLESGYSTDSPPNFPTNVLFWGNENL 639
            GLD   +   P   +++       K G+ECAVCL E ED E  RL+P C H FH +C+D+W   HSTCPLCR   D+  +  G+ + S E          +S    E G   +S      + + W N N+
Sbjct:  106 GLDAEAIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEHSTCPLCR--ADLVLNQQGDDDDSTESYSGTDPGTISSSTDPERGMVLESSDAHLLDAVTWSNSNI 233          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL4D_ARATH (Putative RING-H2 finger protein ATL4D OS=Arabidopsis thaliana GN=ATL4D PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.826e-15
Identity = 38/104 (36.54%), Postives = 62/104 (59.62%), Query Frame = 1
Query:  271 LRAGLDPAILRKIPVVAFNQ-QDFK---DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQESLE 570
            +R G+D  ++   P   +++ + FK    G+ECA+CL E ED E  R +P C+H FH  CID W  S STCP+CR  + + +S +    PS++++  N+Q  ++
Sbjct:   88 VRRGIDKDVIESFPAFLYSEVKAFKIGNGGVECAICLCEFEDEEPLRWMPPCSHTFHANCIDEWLSSRSTCPVCRANLSL-KSGDSFPHPSMDVETGNAQRGVQ 190          
The following BLAST results are available for this feature:
BLAST of DY262560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
ATL1J_ARATH3.461e-1648.72RING-H2 finger protein ATL1J OS=Arabidopsis thalia... [more]
ATL2H_ARATH7.710e-1642.16RING-H2 finger protein ATL2H OS=Arabidopsis thalia... [more]
ATL1A_ARATH7.710e-1644.05RING-H2 finger protein ATL1A OS=Arabidopsis thalia... [more]
ATL5K_ARATH1.007e-1540.95RING-H2 finger protein ATL5K OS=Arabidopsis thalia... [more]
ATL5A_ARATH1.007e-1551.39RING-H2 finger protein ATL5A OS=Arabidopsis thalia... [more]
ATL1I_ARATH1.007e-1547.44RING-H2 finger protein ATL1I OS=Arabidopsis thalia... [more]
ATL4H_ARATH1.315e-1539.32Putative RING-H2 finger protein ATL4H OS=Arabidops... [more]
ATL3C_ARATH2.930e-1550.65RING-H2 finger protein ATL3C OS=Arabidopsis thalia... [more]
ATL2G_ARATH2.930e-1534.62RING-H2 finger protein ATL2G OS=Arabidopsis thalia... [more]
ATL4D_ARATH3.826e-1536.54Putative RING-H2 finger protein ATL4D OS=Arabidops... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA100BC08RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262560 ID=DY262560; Name=DY262560; organism=Citrus clementina; type=EST; length=1316bp
CTGGGTTTGTTTTGCTTCTAACGAAAAATGAGTGCCTCTGACGGTGATGA
AAATGGATTTAACAACACCGGTTCTCTTGAAATAACGGGACAAATCATGG
TGATAGCAATAATTGTTCTCTTTTTCGTAGTGGTCTTTATTCTGTTTCTT
CACCTGTACGCCAAGTGGTTCTGGTGGCGGATTGAGCAGACGCCGGAACC
TTCTCCCAGTCGTAGCCACCGCCGCCGCCGTCGTTTTGTCTTTGCTCCCG
GGCAGGACCCTGCTGTCACTCTCCGTGCTGGGCTTGATCCTGCAATCCTG
AGGAAAATCCCTGTGGTTGCATTCAACCAGCAGGACTTTAAAGATGGACT
TGAATGTGCAGTGTGCTTAAGCGAGCTTGAAGATGGAGAGAAAGCTAGGC
TGCTGCCGAAATGTAACCATGGGTTTCATGTTGAGTGCATTGACATGTGG
TTTCAGTCTCACTCAACTTGCCCTCTCTGTAGGAACCCCGTTGATGTTGA
ACGCTCAAACAATGGCAACGGTGAACCATCAGTGGAGATTGATATTCAGA
ATTCACAAGAAAGTTTGGAATCTGGGTACTCAACAGATTCACCTCCGAAT
TTCCCTACTAATGTGCTGTTCTGGGGAAATGAAAATCTGGTTAGCTCTGC
TGGTGTTTGCGTGCACGAGGGTGTTTCTTCATCATCATCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTACTGAGATGAATAATAGTCGGCGGGGTGCT
GAAATGTTGGTGATCGATATTCCTGTAAATAGTATGAGTGAGCATTTCTC
ATCATTGTCACCTGTCGAGGAAACAAAGTCGCCTATGACGACAAGATTGA
GGTCATTGAAGAGGCTTTTGAGTAGGGAGAAGAGGGTAAGTCCTTGTGGT
ACTACTGGTACTAGTAGTTCTTGTGATGTTGAACAAGTTAGTAGAGCATA
GATTTCATTTTCAGAGGCAGCTTTTTGTGCCTGAAGATGTGATGGTATAG
TATCTCCGCACATATTGGCCTAATGGTTTGAAAATGATTTCATTCTGGGA
AATCAAAAAACTTGTTGTTCTTCCTGGTGAAAAAGGCAAAGCACCTGGCT
CTATTTTTCTGTTTGAAAAACTTTTTCATTGATTGGTTGTGAAAAAAAAA
AAGTTTTCCCCGTTTTCTAAAAAACTAAAACAATTTTTTTCTTATTTCTT
TCTTTTTTTTGAAAAAAAAATTTTTTTTTAACATATTTAGGTTTTAAGGG
GGAAAAAGACTGGTTAAAAAACAAACCCCTTTAAAAAATTTAAAATTATA
TATATTTTTAGGAAAA
back to top