DY262560

Overview
NameDY262560
Unique NameDY262560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1316
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262560_ssr219 microsatellite DY262560_ssr219:219..230. BLAST: Citrus ESTs to Prunus persica proteins V1
DY262560_ssr688 microsatellite DY262560_ssr688:688..720. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5672 contig Ccv1_Contig5672:309..1622. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL3G_ARATH (RING-H2 finger protein ATL3G OS=Arabidopsis thaliana GN=ATL3G PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 6.754e-12
Identity = 31/82 (37.80%), Postives = 47/82 (57.32%), Query Frame = 1
Query:  280 GLDPAILRKIPVVAFN-----------QQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPV 492
            GLD ++++ +P+  ++           +    +  +CAVCL E E+G+  R LP C H FH+ECID W +SH  CPLCR  +
Sbjct:  120 GLDDSVIKTLPLFLYSAAACTGKPAVGKTSAANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAI 201          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: RN167_HUMAN (E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.152e-11
Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = 1
Query:  298 LRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWF-QSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQESLESGYSTDSPPNFPTNVL 618
            L++IP   + + D  D   CA+CL E EDG+K R+LP C H +H  C+D W  Q+  TCP+C+ PV     + G G+   E + Q  +E  + G   D P +  T +L
Sbjct:  213 LKQIPTHDYQKGDQYD--VCAICLDEYEDGDKLRVLP-CAHAYHSRCVDPWLTQTRKTCPICKQPV-----HRGPGDEDQEEETQGQEEG-DEGEPRDHPASERTPLL 311          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL4L_ARATH (RING-H2 finger protein ATL4L OS=Arabidopsis thaliana GN=ATL4L PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.152e-11
Identity = 33/93 (35.48%), Postives = 48/93 (51.61%), Query Frame = 1
Query:  334 DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRN---PVDVERSNNGNGEPSVEIDIQNSQESLESGYSTDSPPNF 603
            D     ECA+C++E  +GE+ R+LP C+H FHV CID W  S S+CP CR    PV  +R  +       ++  Q       S +++   P F
Sbjct:  106 DGDSSTECAICITEFSEGEEIRILPLCSHAFHVACIDKWLTSRSSCPSCRRILVPVKCDRCGHHASTAETQVKDQPPHHQHPSQFTSAIIPAF 198          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: RN167_MOUSE (E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.505e-11
Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = 1
Query:  298 LRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWF-QSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQESLESGYSTDSPPNFPTNVL 618
            L++IP   + + D  D   CA+CL E EDG+K R+LP C H +H  C+D W  Q+  TCP+C+ PV     + G G+   E + Q  +E  + G   D P +  T +L
Sbjct:  213 LKQIPTHDYQKGDEYD--VCAICLDEYEDGDKLRVLP-CAHAYHSRCVDPWLTQTRKTCPICKQPV-----HRGPGDEEQEEETQEQEEG-DEGEPRDQPASEWTPLL 311          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: RN115_MOUSE (RING finger protein 115 OS=Mus musculus GN=Rnf115 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.505e-11
Identity = 39/102 (38.24%), Postives = 50/102 (49.02%), Query Frame = 1
Query:  286 DPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQESLESGYSTDS 591
            D   +  +P V   Q+    GLEC VC  +    EK R LP CNH FH  CI  W + H TCP+CR  +        NGE S     Q+S+ S  + +S DS
Sbjct:  206 DKEKITSLPTVTVTQEQVNTGLECPVCKEDYTVEEKVRQLP-CNHFFHSSCIVPWLELHDTCPVCRKSL--------NGEDSTR-QTQSSEASASNRFSNDS 297          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL5J_ARATH (RING-H2 finger protein ATL5J OS=Arabidopsis thaliana GN=ATL5J PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.965e-11
Identity = 31/69 (44.93%), Postives = 40/69 (57.97%), Query Frame = 1
Query:  280 GLDPAILRKIPVVAFNQQD-FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCR 483
            GL    L KIP +   +        ECAVCL ++E G+  RL+P CNHGFH  C D W  +H+ CP+CR
Sbjct:   78 GLSVLELEKIPKLTGRELAVIARSTECAVCLEDIESGQSTRLVPGCNHGFHQLCADTWLSNHTVCPVCR 146          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL1E_ARATH (RING-H2 finger protein ATL1E OS=Arabidopsis thaliana GN=ATL1E PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.965e-11
Identity = 31/81 (38.27%), Postives = 48/81 (59.26%), Query Frame = 1
Query:  253 QDPAVTLRAGLDPAIL---RKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRN 486
            Q   V +  GLD + +   +K+ +    +    +G+ C +CLSE    E  R +P+C+H FHV+CID W + HS+CP+CRN
Sbjct:  216 QPRGVVVTTGLDQSTIESYKKVELGESRRLPGTNGIICPICLSEYASKETVRCMPECDHCFHVQCIDEWLKIHSSCPVCRN 296          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL5M_ARATH (RING-H2 finger protein ATL5M OS=Arabidopsis thaliana GN=ATL5M PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.352e-11
Identity = 27/52 (51.92%), Postives = 35/52 (67.31%), Query Frame = 1
Query:  352 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERS 507
            ECA+CLSE E GE  ++L KC HGFHV+CI  W  + S+CP CR  +  + S
Sbjct:  106 ECAICLSEFEQGESIQVLEKCQHGFHVKCIHKWLSTRSSCPTCRTSIFSQHS 157          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL4A_ARATH (RING-H2 finger protein ATL4A OS=Arabidopsis thaliana GN=ATL4A PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.378e-11
Identity = 31/75 (41.33%), Postives = 44/75 (58.67%), Query Frame = 1
Query:  280 GLDPAILRKIPVVAFNQ-QDFKDG---LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPV 492
            GLD   ++  P   + + +  + G   LEC VCL+E +D E  RL+P C H FH +C+D+W    STCP+CR  V
Sbjct:   56 GLDAEAIKSFPSFVYTEARGIEPGIGELECVVCLNEFKDDETLRLVPPCVHVFHADCVDIWLSHSSTCPICRAKV 130          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL5E_ARATH (Putative RING-H2 finger protein ATL5E OS=Arabidopsis thaliana GN=ATL5E PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.718e-11
Identity = 28/79 (35.44%), Postives = 44/79 (55.70%), Query Frame = 1
Query:  259 PAVTLRAGLDPAILRKIPVVAFNQQ---DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRN 486
            PA  ++ GLD  ++   P +           +   C++CL + E  E  R +P+CNH FH +C+D W ++ +TCPLCRN
Sbjct:   59 PAAEVKLGLDRPVIESYPRIVLGDSRRLPRPNNGPCSICLCDYEAREPVRCIPECNHCFHTDCVDEWLRTSATCPLCRN 137          
The following BLAST results are available for this feature:
BLAST of DY262560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
ATL3G_ARATH6.754e-1237.80RING-H2 finger protein ATL3G OS=Arabidopsis thalia... [more]
RN167_HUMAN1.152e-1137.04E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens... [more]
ATL4L_ARATH1.152e-1135.48RING-H2 finger protein ATL4L OS=Arabidopsis thalia... [more]
RN167_MOUSE1.505e-1137.04E3 ubiquitin-protein ligase RNF167 OS=Mus musculus... [more]
RN115_MOUSE1.505e-1138.24RING finger protein 115 OS=Mus musculus GN=Rnf115 ... [more]
ATL5J_ARATH1.965e-1144.93RING-H2 finger protein ATL5J OS=Arabidopsis thalia... [more]
ATL1E_ARATH1.965e-1138.27RING-H2 finger protein ATL1E OS=Arabidopsis thalia... [more]
ATL5M_ARATH3.352e-1151.92RING-H2 finger protein ATL5M OS=Arabidopsis thalia... [more]
ATL4A_ARATH4.378e-1141.33RING-H2 finger protein ATL4A OS=Arabidopsis thalia... [more]
ATL5E_ARATH5.718e-1135.44Putative RING-H2 finger protein ATL5E OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100BC08RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262560 ID=DY262560; Name=DY262560; organism=Citrus clementina; type=EST; length=1316bp
CTGGGTTTGTTTTGCTTCTAACGAAAAATGAGTGCCTCTGACGGTGATGA
AAATGGATTTAACAACACCGGTTCTCTTGAAATAACGGGACAAATCATGG
TGATAGCAATAATTGTTCTCTTTTTCGTAGTGGTCTTTATTCTGTTTCTT
CACCTGTACGCCAAGTGGTTCTGGTGGCGGATTGAGCAGACGCCGGAACC
TTCTCCCAGTCGTAGCCACCGCCGCCGCCGTCGTTTTGTCTTTGCTCCCG
GGCAGGACCCTGCTGTCACTCTCCGTGCTGGGCTTGATCCTGCAATCCTG
AGGAAAATCCCTGTGGTTGCATTCAACCAGCAGGACTTTAAAGATGGACT
TGAATGTGCAGTGTGCTTAAGCGAGCTTGAAGATGGAGAGAAAGCTAGGC
TGCTGCCGAAATGTAACCATGGGTTTCATGTTGAGTGCATTGACATGTGG
TTTCAGTCTCACTCAACTTGCCCTCTCTGTAGGAACCCCGTTGATGTTGA
ACGCTCAAACAATGGCAACGGTGAACCATCAGTGGAGATTGATATTCAGA
ATTCACAAGAAAGTTTGGAATCTGGGTACTCAACAGATTCACCTCCGAAT
TTCCCTACTAATGTGCTGTTCTGGGGAAATGAAAATCTGGTTAGCTCTGC
TGGTGTTTGCGTGCACGAGGGTGTTTCTTCATCATCATCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTACTGAGATGAATAATAGTCGGCGGGGTGCT
GAAATGTTGGTGATCGATATTCCTGTAAATAGTATGAGTGAGCATTTCTC
ATCATTGTCACCTGTCGAGGAAACAAAGTCGCCTATGACGACAAGATTGA
GGTCATTGAAGAGGCTTTTGAGTAGGGAGAAGAGGGTAAGTCCTTGTGGT
ACTACTGGTACTAGTAGTTCTTGTGATGTTGAACAAGTTAGTAGAGCATA
GATTTCATTTTCAGAGGCAGCTTTTTGTGCCTGAAGATGTGATGGTATAG
TATCTCCGCACATATTGGCCTAATGGTTTGAAAATGATTTCATTCTGGGA
AATCAAAAAACTTGTTGTTCTTCCTGGTGAAAAAGGCAAAGCACCTGGCT
CTATTTTTCTGTTTGAAAAACTTTTTCATTGATTGGTTGTGAAAAAAAAA
AAGTTTTCCCCGTTTTCTAAAAAACTAAAACAATTTTTTTCTTATTTCTT
TCTTTTTTTTGAAAAAAAAATTTTTTTTTAACATATTTAGGTTTTAAGGG
GGAAAAAGACTGGTTAAAAAACAAACCCCTTTAAAAAATTTAAAATTATA
TATATTTTTAGGAAAA
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