DY262567

Overview
NameDY262567
Unique NameDY262567
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1307
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY262567 vs. ExPASy Swiss-Prot
Match: G2OX1_ARATH (Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA2OX1 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 7.148e-14
Identity = 69/281 (24.56%), Postives = 113/281 (40.21%), Query Frame = 3 
Query:  174 VVPTIDLSGVDSDDLRPTIVEKIARASRELGFFQVVNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRRENTKGVSY---ISNIDLFHSKAASWRDTLQIRL------GLTEPELEEVPEICRKEAVEWNHHVKQXXXXXXXXXXXXXXXKTDRLKEKTFLEGR---MMVGHYYPYCPQPDL-------TVGITSHTDPGPLTILLQDDKGGLQIKHGE-EWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSLEPESQLLFS--SFQARGTPL 950
            ++P ID+S  +S          + +A  + GFF+V+NHG+  E++  +      F   P        + E T+   Y     N  +  +    W + L +        G   P L + P   R    E+   V++               K      K   +     ++  ++YP CP  +         +G   HTDP  +++L  ++  GLQI   +  W+ V P   +   N+GD LQ+M+N  + SV HRVLAN      S + F+  S   R  PL
Sbjct:   17 LIPVIDMSDPESK-------HALVKACEDFGFFKVINHGVSAELVSVLEHETVDFFSLP--------KSEKTQVAGYPFGYGNSKIGRNGDVGWVEYLLMNANHDSGSGPLFPSLLKSPGTFRNALEEYTTSVRKMTFDVLEKITDGLGIKPRNTLSKLVSDQNTDSILRLNHYPPCPLSNKKTNGGKNVIGFGEHTDPQIISVLRSNNTSGLQINLNDGSWISVPPDHTSFFFNVGDSLQVMTNGRFKSVRHRVLANCKKSRVSMIYFAGPSLTQRIAPL 282
The following BLAST results are available for this feature:
BLAST of DY262567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
G2OX1_ARATH7.148e-1424.56Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100BD03RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262567 ID=DY262567; Name=DY262567; organism=Citrus clementina; type=EST; length=1307bp
TGAGCCTAGAATCATACGACAGGGCCAAAGAAGTGAAACGATTCGACGAG
TCCAAAGTCGGGGTCAAAGGTTTAGTTGACTTGGGCGTCACCGCCATCCC
CCGCTTTTTCATCCACCCACCCGCCACTCTTGCCGATCTCAGACCCAAGT
CAAAGACCCGGCCCGTCTCTGATGTAGTCCCCACCATCGATTTATCGGGC
GTTGACTCGGACGATCTGCGGCCGACGATTGTGGAAAAGATAGCACGTGC
CTCGCGGGAGCTGGGGTTCTTTCAGGTTGTGAATCACGGCATCGGAGTTG
AGGTCTTGGAGCGTATGGTTCGGGCCATTAAAGGGTTTCATGAACAGCCG
CCAGAGATCAAGGCGCCGGTGTATCGGAGGGAGAACACCAAAGGCGTGTC
TTACATTTCCAACATCGATTTGTTTCACTCTAAAGCTGCCAGCTGGAGGG
ACACACTGCAGATAAGGCTAGGTCTGACGGAACCAGAGCTTGAAGAAGTT
CCTGAAATATGTAGGAAAGAGGCAGTCGAGTGGAACCACCATGTAAAACA
GCTCGGAGAGCTTTTGTTTGGGCTGCTGTGTGAAGGTTTGGGGTTGAAAA
CCGATAGGTTGAAGGAAAAGACCTTCCTGGAAGGGAGGATGATGGTGGGC
CATTATTATCCCTACTGTCCGCAGCCTGATCTGACAGTGGGGATCACATC
TCATACTGATCCAGGGCCATTGACAATCTTGTTGCAAGATGATAAAGGTG
GGCTGCAAATTAAGCATGGTGAGGAATGGGTGGATGTTAAACCAGTTCCA
GGAGCTCTGGTTATTAACATTGGGGATATACTTCAGATTATGTCCAATGA
TGAATACATAAGTGTAGAGCATAGAGTATTGGCTAATTCGTCCCTGGAAC
CCGAATCTCAATTGCTGTTTTCCTCATTCCAAGCGAGAGGGACACCTTTA
TGGACCATTCCCGGAACTGATATCCCCAGAGAAACCCGGCTCGTTTTCGG
CCGCTCACATACCCAAACCATGTTAACCAGGTTCTTCCAAAAAAATTTAA
AGGAAAAAACATTGTGAAATTATAATGGCTGGAAAAAAAAAAATTGGAAA
ATTCTGGGTTTTTTGGGCCGGTAAAACTAATTCTTACTAAAAAAAACAAA
TTTAAATGGTTCCCCCCATTTAAAAACAACAAAATGGTAATTTGGGTTCC
CCTTTCCCAAAATAATAAAAAAAGGGGGGGGGCTTCTCCCGTGTTCCTCT
TTTTAAAATAGGGGAAAAAAGGAAAAAAGGGTGTTTTCCTTGCCTTTTTT
ATTTTTA
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