DY262577

Overview
NameDY262577
Unique NameDY262577
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1203
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_RHIRD (1-aminocyclopropane-1-carboxylate deaminase OS=Rhizobium radiobacter GN=acdS PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.332e-19
Identity = 54/151 (35.76%), Postives = 86/151 (56.95%), Query Frame = 2
Query:  356 NTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWGYIEAIKEI 802
            + E+W KR+D  SG+ + GNK+RKLE+++ DA+A  AD +++IGG+QSNH R  A  A  L + C L+  +     D      GN+L+ RL+GA   ++  ++   IG         + ++ EG +PY IP G S +  G  GY+   +E+
Sbjct:   30 DVEIWAKREDCNSGLAMGGNKLRKLEYIVPDAIASNADTLVSIGGVQSNHTRMVAAVAAKLGMKCRLVQESWVPHEDAVYDRVGNILMTRLMGADSRIV--DDGFDIGIRQSWEDAIQSVIDEGGKPYAIPAGASVHKYGGLGYVAFAEEV 178          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_BRAJA (1-aminocyclopropane-1-carboxylate deaminase OS=Bradyrhizobium japonicum GN=acdS PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.272e-19
Identity = 58/169 (34.32%), Postives = 92/169 (54.44%), Query Frame = 2
Query:  314 PTPIHKWNL--PNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWGYIEAIKEIEQ 808
            PTPI K      +L  N E++ KR+D  SG+   GNK+RKLE+++ DA+A  AD +++IGG+QSNH R  A  A  + + C L+        D      GN+++ R++GA + L+  ++   IG         E++   G +PY IP G S +  G  GY+   +E+ +
Sbjct:   14 PTPIEKLERLSKHLGGNVEIYAKREDCNSGLAYGGNKLRKLEYIIPDAIASNADTLVSIGGVQSNHTRMIAAVAAKIGMKCRLVQEAWVPHEDAVYDRVGNIMLSRIMGADVRLV--DDGFDIGIRKSWEQAIEEVKAAGGKPYAIPAGASVHKYGGLGYVGFAEEVRK 180          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_METNO (1-aminocyclopropane-1-carboxylate deaminase OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=acdS PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.968e-19
Identity = 57/167 (34.13%), Postives = 92/167 (55.09%), Query Frame = 2
Query:  314 PTPIHKWNL--PNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWGYIEAIKEI 802
            PTPI +      +L    E++ KR+D  SG+   GNK+RKLE+++ DA+A GAD +++IGG+QSNH R  A  A  + + C L+        D      GN+++ R++GA + L+  ++   IG  +      + +  +G RPY IP G S +  G  GY+   +E+
Sbjct:   14 PTPIERLGRLSAHLGGQVELYAKREDCNSGLAFGGNKLRKLEYIVPDAIASGADTLVSIGGVQSNHTRMVAAVAAKIGMKCRLVQEAWVPHEDAVYDRVGNIMLSRILGADVRLV--DDGFDIGIRSSWQEAIDDVKAKGGRPYAIPAGASVHKFGGLGYVGFAEEV 178          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_SCHPO (Probable 1-aminocyclopropane-1-carboxylate deaminase OS=Schizosaccharomyces pombe GN=SPAC922.03 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 8.635e-19
Identity = 66/183 (36.07%), Postives = 97/183 (53.01%), Query Frame = 2
Query:  314 PTPIHKWNL--PNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWGYIEAIKEI-EQXLQTGTGGVKLMI 847
            PTPI         L    E++ KR+D  SG+   GNK+RKLE+L+ +A+  G D +++IGGIQSN  R  A  A +L LDC LI        D      GN+ + R+V A + L S +    IG         E+L K+G++P+ IP G S +  G  G++  ++EI EQ  Q G    K+++
Sbjct:   15 PTPITSMKRLSKTLGGKVEIFAKREDCNSGLAFGGNKIRKLEYLIPEAIDGGYDTLVSIGGIQSNQTRQVAAVAAHLGLDCVLIQEDWVDYKDTMYDRVGNIELSRIVNADVRLDSSK--FDIGIRPSFKNALEELTKKGKKPFPIPAGCSEHPYGGLGFVGCVEEIYEQEKQLGFKFDKIVV 195          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_BURVG (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=acdS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 8.635e-19
Identity = 65/189 (34.39%), Postives = 98/189 (51.85%), Query Frame = 2
Query:  269 HLTPIPSHVFSLGHFPTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS----NSIGTWGYIEAIKEIEQXL 814
            +L   P +  + G  PTPI   K    +L    E++ KR+D  SG+   GNK RKLE+L+ DA+AQGAD +++IGG+QSN  R  A  A +L + C L+        D      GN+ + R++GA + L++  +   IG         E + + G +PY IP G S      +G  G+ E ++E E  L
Sbjct:    2 NLQRFPRYPLTFG--PTPIQPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLIPDALAQGADTLVSIGGVQSNQTRQVAAVAAHLGMKCVLVQEHWVNYDDPVYDRVGNIQLSRMMGADVRLVA--DGFDIGIRRSWEDAMESVRQAGGKPYPIPAGCSEHPLGGLGFVGFAEEVREQEAQL 186          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_AGRVS (1-aminocyclopropane-1-carboxylate deaminase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=acdS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 8.635e-19
Identity = 57/167 (34.13%), Postives = 90/167 (53.89%), Query Frame = 2
Query:  314 PTPIHKWN--LPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWGYIEAIKEI 802
            PTPI K      +L    +++ KR+D  SG+   GNK+RKLE+++ DA+A GAD +++IGG+QSNH R  A  A  +   C L+        D      GN+++ R++GA + L+  ++   IG         E++   G +PY IP G S +  G  GY+   +E+
Sbjct:   14 PTPIEKLERLTDHLGGKVQLYAKREDCNSGLAFGGNKLRKLEYIIPDAIASGADTLVSIGGVQSNHTRMVAAVAAKIGFKCRLVQEAWVPHEDAVYDRVGNIMLSRIMGADVRLV--DDGFDIGIRRSWEEAIEEVKAAGGKPYAIPAGASVHKYGGLGYVGFAEEV 178          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_RHILV (1-aminocyclopropane-1-carboxylate deaminase OS=Rhizobium leguminosarum bv. viciae GN=acdS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.128e-18
Identity = 60/169 (35.50%), Postives = 91/169 (53.85%), Query Frame = 2
Query:  314 PTPIHKWNLPNLPH----NTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWGYIEAIKEI 802
            PTPI   +LP L        +++ KRDD  SG+ + GNK+RKLE+++ DA+A GAD +++IGG+QSNH R  A  A  + + C +I        D      GN+L+ +L+GA   L+  E+   IG         + +   G +PY IP G S +  G  GY+   +E+
Sbjct:   16 PTPIE--HLPRLTAALGGKVDIYAKRDDCNSGLAMGGNKLRKLEYIVPDAIASGADTLVSIGGVQSNHTRMVAATAAKIGMKCVVIQEKWVPHYDAVYDRVGNILMTKLMGADSRLV--EDGFDIGIRKSWEDAIQSVEDAGGKPYAIPAGASVHKFGGLGYVGFAEEV 180          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_BURCM (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=acdS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.128e-18
Identity = 62/174 (35.63%), Postives = 92/174 (52.87%), Query Frame = 2
Query:  314 PTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS----NSIGTWGYIEAIKEIEQXL 814
            PTPI   K    +L    E++ KR+D  SG+   GNK RKLE+L+ DA+AQGAD +++IGG+QSN  R  A  A +L + C L+        D      GN+ + R++GA + L++  +   IG         E + + G +PY IP G S      +G  G+ E ++E E  L
Sbjct:   15 PTPIQPLKRLSQHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGADTLVSIGGVQSNQTRQVAAVAAHLGMKCVLVQEHWVNYEDPVYDRVGNIQLSRMMGADVRLVA--DGFDIGIRRSWEEAMESVRQAGGKPYPIPAGCSEHPLGGLGFVGFAEEVREQEAQL 186          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_BURCC (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia cenocepacia (strain MC0-3) GN=acdS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.128e-18
Identity = 66/190 (34.74%), Postives = 100/190 (52.63%), Query Frame = 2
Query:  269 HLTPIPSHVFSLGHFPTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWGYIEAIKEIE-QXLQTG 823
            +L   P +  + G  PTPI   K    +L    E++ KR+D  SG+   GNK RKLE+L+ DA+AQGAD +++IGG+QSN  R  A  A +L + C L+        D      GN+ + R++GA + L+S  +   IG         E + + G +PY IP G S + +G  G++   +E+  Q  Q G
Sbjct:    2 NLQRFPRYPLTFG--PTPIQPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGADTLVSIGGVQSNQTRQVAAVAAHLGMKCVLVQEHWVNYEDPVYDRVGNIQLSRMMGADVRLVS--DGFDIGIRRSWEEAMESVRQAGGKPYPIPAGCSEHPLGGLGFVGFAEEVRAQEAQLG 187          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_METS4 (1-aminocyclopropane-1-carboxylate deaminase OS=Methylobacterium sp. (strain 4-46) GN=acdS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.473e-18
Identity = 56/167 (33.53%), Postives = 92/167 (55.09%), Query Frame = 2
Query:  314 PTPIHKWNL--PNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWGYIEAIKEI 802
            PTPI + +    +L    +++ KR+D  SG+   GNK+RKLE+++ DA+A GAD +++IGG+QSNH R  A  A  + + C L+        D      GN+++ R++GA + L+  E+   IG  +       ++   G +PY IP G S +  G  GY+   +E+
Sbjct:   14 PTPIERLSRLSAHLGGKVDLYAKREDCNSGLAFGGNKLRKLEYIVPDAIASGADTLVSIGGVQSNHTRMVAAVAAKIGMKCRLVQEAWVPHEDAVYDRVGNIMLSRIMGADVRLV--EDGFDIGIRSSWEQAIAEVKAAGGKPYAIPAGASVHKYGGLGYVGFAEEV 178          
The following BLAST results are available for this feature:
BLAST of DY262577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
1A1D_RHIRD1.332e-1935.761-aminocyclopropane-1-carboxylate deaminase OS=Rhi... [more]
1A1D_BRAJA2.272e-1934.321-aminocyclopropane-1-carboxylate deaminase OS=Bra... [more]
1A1D_METNO2.968e-1934.131-aminocyclopropane-1-carboxylate deaminase OS=Met... [more]
1A1D_SCHPO8.635e-1936.07Probable 1-aminocyclopropane-1-carboxylate deamina... [more]
1A1D_BURVG8.635e-1934.391-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]
1A1D_AGRVS8.635e-1934.131-aminocyclopropane-1-carboxylate deaminase OS=Agr... [more]
1A1D_RHILV1.128e-1835.501-aminocyclopropane-1-carboxylate deaminase OS=Rhi... [more]
1A1D_BURCM1.128e-1835.631-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]
1A1D_BURCC1.128e-1834.741-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]
1A1D_METS41.473e-1833.531-aminocyclopropane-1-carboxylate deaminase OS=Met... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100BE01RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262577 ID=DY262577; Name=DY262577; organism=Citrus clementina; type=EST; length=1203bp
TTTTGGATTTTGGTAGTGTCATGCAGCAGCAGCAGCGGTTAAAGCAAATG
GAATCATGTTGTTGTGCAGCAGCTGCAGCGGTAACCTTCTGAGTTCAATT
GTTTCTCCAAAATTAAGACAACGCCTAATCAGAGTCTCTGAGTCTCAGCT
TCATCATCATCAGCAGCATAAAATCAAAATGGAAAGAAAAGAGAGCGGTA
ATGATAGTGATGCTTTCGGTTTCAAATTCCTCACCAAAACCCCATACGCT
TCTCCTTCTTGGGCTTCTCATCTCACCCCCATCCCTTCTCACGTCTTCTC
TCTCGGCCACTTTCCAACTCCAATTCACAAATGGAACCTCCCTAATTTGC
CCCATAACACTGAGGTCTGGCTCAAGCGTGATGACCTTTCCGGCATGCAA
TTGAGTGGAAACAAGGTAAGGAAATTAGAGTTTTTGATGGCAGATGCAGT
GGCTCAAGGTGCTGATTGCATCATCACCATTGGAGGCATCCAAAGCAATC
ATTGTCGTGCTGCTGCCGTTGCTGCCAAGTATCTCAATCTTGATTGTTAT
CTTATTCTTCGCACCTCTAAGGTTCTGGTGGACCAAGATCCTGGTTTGAC
TGGCAATCTACTAGTTGAACGTTTAGTTGGAGCTCATATTGAACTTATCT
CTAAAGAAGAGTATTCAAAAATTGGGAGTGTGACTCTTACTAACATTTTA
AAAGAAAAGTTGCTAAAGGAAGGGAGAAGACCATATGTTATTCCTGTTGG
TGGGTCAAACTCAATAGGGACATGGGGTTATATTGAAGCAATTAAGGAGA
TTGAGCAGNCACTTCAGACTGGGACTGGTGGAGTGAAATTGATGATATTG
TTGTAGCTTGTGGCAGTGGAGGAACAATTGCTGGTTTGTCATTGGGGTCA
TGGCTTGGAACATTGAAAGCAAAAGTTCATGCTTTTTCTGTTTGTGATGA
CCCTGATTACTTCTACGACTATACCCAAGGGCTACTTGATGGGCTCAATG
CAGGAATTGACTCCCATGATTTGGTAAACATTCAAAATCCAAAGGTTCTG
GCTATAGCATCACATTTCGGAAGAACTAATTTTGTTAAAAAATTGGTGCC
GCAACGGGGGTAATTTTTGATCAGTTTAAAAGGGAAAAAATTGCCCTAGG
GGGAGTGGAAAAAAAAGGGCTTAAAAATCCCAAAAAAGGGGGGAAAGGGG
AGG
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