DY262577

Overview
NameDY262577
Unique NameDY262577
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1203
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_RHILO (1-aminocyclopropane-1-carboxylate deaminase OS=Rhizobium loti GN=acdS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.924e-18
Identity = 58/173 (33.53%), Postives = 92/173 (53.18%), Query Frame = 2
Query:  317 TPIHKWNL--PNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS----NSIGTWGYIEAIKEIEQXL 814
            TPI K +    +L    E++ KR+D  SG+   GNK+RKLE+++ DA+A  AD ++T+GG+QSNH R  A  A  + + C L+  +     D      GN+L+ R++GA + L+  ++   IG          ++   G RPY IP G S      +G  G+ E ++  E+ L
Sbjct:   15 TPIEKLDRLGKHLGGKVEIYAKREDCNSGLAFGGNKLRKLEYVIPDAIASDADTLVTVGGVQSNHTRMVAAVAAKIGMKCLLVHESWVPHEDVVYDRVGNILLSRILGAEVRLV--DDGFDIGIRRSWEKALYEVKARGGRPYAIPAGASVHPNGGLGYVGFAEEVRAQEEQL 185          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_BURCH (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia cenocepacia (strain HI2424) GN=acdS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.512e-18
Identity = 65/190 (34.21%), Postives = 100/190 (52.63%), Query Frame = 2
Query:  269 HLTPIPSHVFSLGHFPTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWGYIEAIKEIE-QXLQTG 823
            +L   P +  + G  PTPI   K    +L    +++ KR+D  SG+   GNK RKLE+L+ DA+AQGAD +++IGG+QSN  R  A  A +L + C L+        D      GN+ + R++GA + L+S  +   IG         E + + G +PY IP G S + +G  G++   +E+  Q  Q G
Sbjct:    2 NLQRFPRYPLTFG--PTPIQPLKRLSAHLGGKVDLYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGADTLVSIGGVQSNQTRQVAAVAAHLGMKCVLVQEHWVNYEDPVYDRVGNIQLSRMMGADVRLVS--DGFDIGIRRSWEEAMESVRQAGGKPYPIPAGCSEHPLGGLGFVGFAEEVRAQEAQLG 187          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_BURCA (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia cenocepacia (strain AU 1054) GN=acdS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.512e-18
Identity = 65/190 (34.21%), Postives = 100/190 (52.63%), Query Frame = 2
Query:  269 HLTPIPSHVFSLGHFPTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWGYIEAIKEIE-QXLQTG 823
            +L   P +  + G  PTPI   K    +L    +++ KR+D  SG+   GNK RKLE+L+ DA+AQGAD +++IGG+QSN  R  A  A +L + C L+        D      GN+ + R++GA + L+S  +   IG         E + + G +PY IP G S + +G  G++   +E+  Q  Q G
Sbjct:    2 NLQRFPRYPLTFG--PTPIQPLKRLSAHLGGKVDLYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGADTLVSIGGVQSNQTRQVAAVAAHLGMKCVLVQEHWVNYEDPVYDRVGNIQLSRMMGADVRLVS--DGFDIGIRRSWEEAMESVRQAGGKPYPIPAGCSEHPLGGLGFVGFAEEVRAQEAQLG 187          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_BURCJ (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=acdS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.281e-18
Identity = 62/182 (34.07%), Postives = 97/182 (53.30%), Query Frame = 2
Query:  269 HLTPIPSHVFSLGHFPTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWGYIEAIKEI 802
            +L   P +  + G  PTPI   K    +L    E++ KR+D  SG+   GNK RKLE+L+ DA+AQGAD +++IGG+QSN  R  A  A +L + C L+        D      GN+ + R++GA + L++  +   IG         E + + G +PY IP G S + +G  G++   +E+
Sbjct:    2 NLQRFPRYPLTFG--PTPIQPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGADTLVSIGGVQSNQTRQVAAVAAHLGMKCVLVQEHWVNYEDPVYDRVGNIQLSRMMGADVRLVA--DGFDIGIRRSWEEAMESVRQAGGKPYPIPAGCSEHPLGGLGFVGFAEEV 179          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_BURS3 (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia sp. (strain 383) GN=acdS PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.286e-18
Identity = 65/190 (34.21%), Postives = 99/190 (52.11%), Query Frame = 2
Query:  269 HLTPIPSHVFSLGHFPTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWGYIEAIKEIE-QXLQTG 823
            +L   P +  + G  PTPI   K    +L    E++ KR+D  SG+   GNK RKLE+L+ DA+ QGAD +++IGG+QSN  R  A  A +L + C L+        D      GN+ + R++GA + L+S  +   IG         E + + G +PY IP G S + +G  G++   +E+  Q  Q G
Sbjct:    2 NLQRFPRYPLTFG--PTPIQPLKRLSEHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALEQGADTLVSIGGVQSNQTRQVAAVAAHLGMKCVLVQEHWVNYEDPVYDRVGNIQLSRMMGADVRLVS--DGFDIGIRRSWEEAMESVRQAGGKPYPIPAGCSEHPLGGLGFVGFAEEVRAQEAQLG 187          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_CRYNE (Probable 1-aminocyclopropane-1-carboxylate deaminase OS=Cryptococcus neoformans GN=CNB00190 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 5.597e-18
Identity = 67/194 (34.54%), Postives = 103/194 (53.09%), Query Frame = 2
Query:  248 ASPSWASHLTPIPSHVFSLGHFPTPIHKWNLPNLPH----NTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGL---TGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWGYIEAIKEI 802
            ++P++ + L  IP   F  G  P+PI    LPNL        +++ KR+D  SG+   GNKVRKLE+L+ADA A+G + ++++GG+QSNH RA    A    L    +    +  V  DP L   TGN+L+ RL+G  + L   +E   I     T    + +  +G +PY IP G S + +G  G+   + E+
Sbjct:    2 STPAYLTKLESIPKEKFLFG--PSPISY--LPNLTAVLGGKVKLYAKREDCNSGLAYGGNKVRKLEYLVADAKAKGCNTLVSVGGVQSNHTRAVTAVAVASGLKAVTV---QEKWVPIDPPLYSETGNILLSRLMGGDVRL--NQETFDIRHKKATEDAFKDVEAKGGKPYYIPAGASDHPLGGLGFTNWVVEL 186          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_BURTA (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=acdS PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.247e-17
Identity = 64/189 (33.86%), Postives = 94/189 (49.74%), Query Frame = 2
Query:  269 HLTPIPSHVFSLGHFPTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSN----SIGTWGYIEAIKEIEQXL 814
            +L   P +  + G  PTPI   K    +L    E++ KRDD  SG+   GNK RKLE+L+ DA+AQG D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L+   +   IG           +   G +PY IP G S+     +G  G+ E ++  E  L
Sbjct:    2 NLQKFPRYPLTFG--PTPIQPLKRLSAHLGGKVELYAKRDDCNSGLAFGGNKTRKLEYLIPDALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYHDAVYDRVGNIQMSRMMGADVRLV--PDGFDIGFRKSWEDALADVRARGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAEL 186          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_BURP1 (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia pseudomallei (strain 1710b) GN=acdS PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.247e-17
Identity = 64/189 (33.86%), Postives = 94/189 (49.74%), Query Frame = 2
Query:  269 HLTPIPSHVFSLGHFPTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSN----SIGTWGYIEAIKEIEQXL 814
            +L   P +  + G  PTPI   K    +L    E++ KRDD  SG+   GNK RKLE+L+ DA+AQG D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L+   +   IG           +   G +PY IP G S+     +G  G+ E ++  E  L
Sbjct:    2 NLQKFPRYPLTFG--PTPIQPLKRLSAHLGGKVELYAKRDDCNSGLAFGGNKTRKLEYLIPDALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYHDAVYDRVGNIQMSRMMGADVRLV--PDGFDIGFRKSWEDALADVRARGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAEL 186          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_BURA4 (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia ambifaria (strain MC40-6) GN=acdS PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.247e-17
Identity = 61/182 (33.52%), Postives = 97/182 (53.30%), Query Frame = 2
Query:  269 HLTPIPSHVFSLGHFPTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWGYIEAIKEI 802
            +L   P +  + G  PTPI   K    +L    +++ KR+D  SG+   GNK RKLE+L+ DA+AQGAD +++IGG+QSN  R  A  A +L + C L+        D      GN+ + R++GA + L++  +   IG         E + + G +PY IP G S + +G  G++   +E+
Sbjct:    2 NLQRFPRYPLTFG--PTPIQPLKRLSAHLGGKVKLYAKREDCNSGLAFGGNKTRKLEYLIPDALAQGADTLVSIGGVQSNQTRQVAAVAAHLGMKCVLVQEHWVNYDDPVYDRVGNIQLSRMMGADVRLVA--DGFDIGIRRSWEEAMESVRQAGGKPYPIPAGCSEHPLGGLGFVGFAEEV 179          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_BURPS (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia pseudomallei GN=acdS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.778e-17
Identity = 61/174 (35.06%), Postives = 88/174 (50.57%), Query Frame = 2
Query:  314 PTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSN----SIGTWGYIEAIKEIEQXL 814
            PTPI   K    +L    E++ KRDD  SG+   GNK RKLE+L+ DA+AQG D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L+   +   IG           +   G +PY IP G S+     +G  G+ E ++  E  L
Sbjct:   15 PTPIQPLKRLSAHLGGKVELYAKRDDCNSGLAFGGNKTRKLEYLIPDALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYHDAVYDRVGNIQMSRMMGADVRLV--PDGFDIGFRKSWEDALADVRARGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAEL 186          
The following BLAST results are available for this feature:
BLAST of DY262577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
1A1D_RHILO1.924e-1833.531-aminocyclopropane-1-carboxylate deaminase OS=Rhi... [more]
1A1D_BURCH2.512e-1834.211-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]
1A1D_BURCA2.512e-1834.211-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]
1A1D_BURCJ3.281e-1834.071-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]
1A1D_BURS34.286e-1834.211-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]
1A1D_CRYNE5.597e-1834.54Probable 1-aminocyclopropane-1-carboxylate deamina... [more]
1A1D_BURTA1.247e-1733.861-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]
1A1D_BURP11.247e-1733.861-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]
1A1D_BURA41.247e-1733.521-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]
1A1D_BURPS2.778e-1735.061-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA100BE01RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262577 ID=DY262577; Name=DY262577; organism=Citrus clementina; type=EST; length=1203bp
TTTTGGATTTTGGTAGTGTCATGCAGCAGCAGCAGCGGTTAAAGCAAATG
GAATCATGTTGTTGTGCAGCAGCTGCAGCGGTAACCTTCTGAGTTCAATT
GTTTCTCCAAAATTAAGACAACGCCTAATCAGAGTCTCTGAGTCTCAGCT
TCATCATCATCAGCAGCATAAAATCAAAATGGAAAGAAAAGAGAGCGGTA
ATGATAGTGATGCTTTCGGTTTCAAATTCCTCACCAAAACCCCATACGCT
TCTCCTTCTTGGGCTTCTCATCTCACCCCCATCCCTTCTCACGTCTTCTC
TCTCGGCCACTTTCCAACTCCAATTCACAAATGGAACCTCCCTAATTTGC
CCCATAACACTGAGGTCTGGCTCAAGCGTGATGACCTTTCCGGCATGCAA
TTGAGTGGAAACAAGGTAAGGAAATTAGAGTTTTTGATGGCAGATGCAGT
GGCTCAAGGTGCTGATTGCATCATCACCATTGGAGGCATCCAAAGCAATC
ATTGTCGTGCTGCTGCCGTTGCTGCCAAGTATCTCAATCTTGATTGTTAT
CTTATTCTTCGCACCTCTAAGGTTCTGGTGGACCAAGATCCTGGTTTGAC
TGGCAATCTACTAGTTGAACGTTTAGTTGGAGCTCATATTGAACTTATCT
CTAAAGAAGAGTATTCAAAAATTGGGAGTGTGACTCTTACTAACATTTTA
AAAGAAAAGTTGCTAAAGGAAGGGAGAAGACCATATGTTATTCCTGTTGG
TGGGTCAAACTCAATAGGGACATGGGGTTATATTGAAGCAATTAAGGAGA
TTGAGCAGNCACTTCAGACTGGGACTGGTGGAGTGAAATTGATGATATTG
TTGTAGCTTGTGGCAGTGGAGGAACAATTGCTGGTTTGTCATTGGGGTCA
TGGCTTGGAACATTGAAAGCAAAAGTTCATGCTTTTTCTGTTTGTGATGA
CCCTGATTACTTCTACGACTATACCCAAGGGCTACTTGATGGGCTCAATG
CAGGAATTGACTCCCATGATTTGGTAAACATTCAAAATCCAAAGGTTCTG
GCTATAGCATCACATTTCGGAAGAACTAATTTTGTTAAAAAATTGGTGCC
GCAACGGGGGTAATTTTTGATCAGTTTAAAAGGGAAAAAATTGCCCTAGG
GGGAGTGGAAAAAAAAGGGCTTAAAAATCCCAAAAAAGGGGGGAAAGGGG
AGG
back to top