DY262577

Overview
NameDY262577
Unique NameDY262577
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1203
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_BURPP (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=acdS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.778e-17
Identity = 61/184 (33.15%), Postives = 94/184 (51.09%), Query Frame = 2
Query:  269 HLTPIPSHVFSLGHFPTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWGYIEAIKEIEQ 808
            +L   P +  + G  PTPI   K    +L     ++ KR+D  SG    GNK RKLE+L+ +A+AQG D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L++  +   IG         E +   G +PY IP G S + +G  G++   +E+ Q
Sbjct:    2 NLQRFPRYPLTFG--PTPIQPLKRLSDHLGGKVHLYAKREDCNSGFAFGGNKTRKLEYLIPEALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVA--DGFDIGFRKSWEDALESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRQ 181          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_BURP6 (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia pseudomallei (strain 668) GN=acdS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.778e-17
Identity = 61/174 (35.06%), Postives = 88/174 (50.57%), Query Frame = 2
Query:  314 PTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSN----SIGTWGYIEAIKEIEQXL 814
            PTPI   K    +L    E++ KRDD  SG+   GNK RKLE+L+ DA+AQG D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L+   +   IG           +   G +PY IP G S+     +G  G+ E ++  E  L
Sbjct:   15 PTPIQPLKRLSAHLGGKVELYAKRDDCNSGLAFGGNKTRKLEYLIPDALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYHDAVYDRVGNIQMSRMMGADVRLV--PDGFDIGFRKSWEDALADVRARGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAEL 186          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_BURP0 (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia pseudomallei (strain 1106a) GN=acdS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.778e-17
Identity = 61/174 (35.06%), Postives = 88/174 (50.57%), Query Frame = 2
Query:  314 PTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSN----SIGTWGYIEAIKEIEQXL 814
            PTPI   K    +L    E++ KRDD  SG+   GNK RKLE+L+ DA+AQG D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L+   +   IG           +   G +PY IP G S+     +G  G+ E ++  E  L
Sbjct:   15 PTPIQPLKRLSAHLGGKVELYAKRDDCNSGLAFGGNKTRKLEYLIPDALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYHDAVYDRVGNIQMSRMMGADVRLV--PDGFDIGFRKSWEDALADVRARGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAEL 186          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_BURMS (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia mallei (strain SAVP1) GN=acdS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.778e-17
Identity = 61/174 (35.06%), Postives = 88/174 (50.57%), Query Frame = 2
Query:  314 PTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSN----SIGTWGYIEAIKEIEQXL 814
            PTPI   K    +L    E++ KRDD  SG+   GNK RKLE+L+ DA+AQG D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L+   +   IG           +   G +PY IP G S+     +G  G+ E ++  E  L
Sbjct:   15 PTPIQPLKRLSAHLGGKVELYAKRDDCNSGLAFGGNKTRKLEYLIPDALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYHDAVYDRVGNIQMSRMMGADVRLV--PDGFDIGFRKSWEDALADVRARGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAEL 186          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_BURMA (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia mallei GN=acdS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.778e-17
Identity = 61/174 (35.06%), Postives = 88/174 (50.57%), Query Frame = 2
Query:  314 PTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSN----SIGTWGYIEAIKEIEQXL 814
            PTPI   K    +L    E++ KRDD  SG+   GNK RKLE+L+ DA+AQG D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L+   +   IG           +   G +PY IP G S+     +G  G+ E ++  E  L
Sbjct:   15 PTPIQPLKRLSAHLGGKVELYAKRDDCNSGLAFGGNKTRKLEYLIPDALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYHDAVYDRVGNIQMSRMMGADVRLV--PDGFDIGFRKSWEDALADVRARGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAEL 186          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_BURM9 (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia mallei (strain NCTC 10229) GN=acdS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.778e-17
Identity = 61/174 (35.06%), Postives = 88/174 (50.57%), Query Frame = 2
Query:  314 PTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSN----SIGTWGYIEAIKEIEQXL 814
            PTPI   K    +L    E++ KRDD  SG+   GNK RKLE+L+ DA+AQG D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L+   +   IG           +   G +PY IP G S+     +G  G+ E ++  E  L
Sbjct:   15 PTPIQPLKRLSAHLGGKVELYAKRDDCNSGLAFGGNKTRKLEYLIPDALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYHDAVYDRVGNIQMSRMMGADVRLV--PDGFDIGFRKSWEDALADVRARGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAEL 186          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_BURM7 (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia mallei (strain NCTC 10247) GN=acdS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.778e-17
Identity = 61/174 (35.06%), Postives = 88/174 (50.57%), Query Frame = 2
Query:  314 PTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSN----SIGTWGYIEAIKEIEQXL 814
            PTPI   K    +L    E++ KRDD  SG+   GNK RKLE+L+ DA+AQG D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L+   +   IG           +   G +PY IP G S+     +G  G+ E ++  E  L
Sbjct:   15 PTPIQPLKRLSAHLGGKVELYAKRDDCNSGLAFGGNKTRKLEYLIPDALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYHDAVYDRVGNIQMSRMMGADVRLV--PDGFDIGFRKSWEDALADVRARGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAEL 186          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_AGRRK (1-aminocyclopropane-1-carboxylate deaminase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=acdS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.778e-17
Identity = 56/167 (33.53%), Postives = 90/167 (53.89%), Query Frame = 2
Query:  314 PTPIHKWNL--PNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWGYIEAIKEI 802
            PT I K      +L    +++ KR+D  SG+   GNK+RKLE+++ DA+A  AD +++IGG+QSNH R  A  A  +   C L+  +     D      GN+L+ R++GA ++++  +E   IG         E +  +G +PY IP G S +  G  GY+   +E+
Sbjct:   14 PTHIEKLERLSEHLGGKVQLYAKREDCNSGLAFGGNKLRKLEYIIPDAIASNADTLVSIGGVQSNHTRMIAAVAAKIGFKCRLVQESWVPHEDAVYDRVGNILLSRIMGADVQMV--DEGFDIGIRQSWEEAIEDVKAKGGKPYPIPAGASVHKYGGLGYVGFAEEV 178          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_VARPS (1-aminocyclopropane-1-carboxylate deaminase OS=Variovorax paradoxus (strain S110) GN=acdS PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 4.738e-17
Identity = 64/189 (33.86%), Postives = 93/189 (49.21%), Query Frame = 2
Query:  269 HLTPIPSHVFSLGHFPTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS----NSIGTWGYIEAIKEIEQXL 814
            +L   P H  + G  PTPIH  K    +L    E++ KR+D  SG+   GNK RKLE+L+ +A+  G D +++IGGIQSN  R  A  A +L L C L+        D      GN+ + R++GA + L S      IG           + K G +P+ IP G S      +G  G+ E +++ E  L
Sbjct:    2 NLKKFPRHALTFG--PTPIHPLKRLSAHLGGEVELYAKREDCNSGLAFGGNKTRKLEYLIPEALEGGYDTLVSIGGIQSNQTRQVAAVAAHLGLKCVLVQENWVNYSDAVYDRVGNIEMSRIMGADVRLDSAG--FDIGIRKSWEEAMADVRKAGGKPFPIPAGCSEHPRGGLGFVGFAEEVRQQEAEL 186          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_BRASO (1-aminocyclopropane-1-carboxylate deaminase OS=Bradyrhizobium sp. (strain ORS278) GN=acdS PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 8.082e-17
Identity = 58/175 (33.14%), Postives = 92/175 (52.57%), Query Frame = 2
Query:  296 FSLGHFPTPIHKWNLPNLPH----NTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWGYIEAIKEI 802
            +SL    TPI   +LP L        +++ KRDD  SG+ + GNK+RKLE+++ DA+   AD +++IGG+QSNH R  A  A  + + C ++  +     D      GN+L+ RL+GA   ++  E+   IG         + +   G +PY IP G S +  G  GY+   +E+
Sbjct:   10 YSLTFGVTPIE--HLPRLTAALGGKVQIYAKRDDCNSGLAMGGNKLRKLEYIVPDAIESNADTLVSIGGVQSNHTRMVAATAAKIGMKCVVVQESWVPHEDAVYDRVGNILMTRLMGADSRIV--EDGFDIGIRKSWENAIQSVKDAGGKPYGIPAGASVHKFGGLGYVGFAEEV 180          
The following BLAST results are available for this feature:
BLAST of DY262577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
1A1D_BURPP2.778e-1733.151-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]
1A1D_BURP62.778e-1735.061-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]
1A1D_BURP02.778e-1735.061-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]
1A1D_BURMS2.778e-1735.061-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]
1A1D_BURMA2.778e-1735.061-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]
1A1D_BURM92.778e-1735.061-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]
1A1D_BURM72.778e-1735.061-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]
1A1D_AGRRK2.778e-1733.531-aminocyclopropane-1-carboxylate deaminase OS=Agr... [more]
1A1D_VARPS4.738e-1733.861-aminocyclopropane-1-carboxylate deaminase OS=Var... [more]
1A1D_BRASO8.082e-1733.141-aminocyclopropane-1-carboxylate deaminase OS=Bra... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100BE01RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262577 ID=DY262577; Name=DY262577; organism=Citrus clementina; type=EST; length=1203bp
TTTTGGATTTTGGTAGTGTCATGCAGCAGCAGCAGCGGTTAAAGCAAATG
GAATCATGTTGTTGTGCAGCAGCTGCAGCGGTAACCTTCTGAGTTCAATT
GTTTCTCCAAAATTAAGACAACGCCTAATCAGAGTCTCTGAGTCTCAGCT
TCATCATCATCAGCAGCATAAAATCAAAATGGAAAGAAAAGAGAGCGGTA
ATGATAGTGATGCTTTCGGTTTCAAATTCCTCACCAAAACCCCATACGCT
TCTCCTTCTTGGGCTTCTCATCTCACCCCCATCCCTTCTCACGTCTTCTC
TCTCGGCCACTTTCCAACTCCAATTCACAAATGGAACCTCCCTAATTTGC
CCCATAACACTGAGGTCTGGCTCAAGCGTGATGACCTTTCCGGCATGCAA
TTGAGTGGAAACAAGGTAAGGAAATTAGAGTTTTTGATGGCAGATGCAGT
GGCTCAAGGTGCTGATTGCATCATCACCATTGGAGGCATCCAAAGCAATC
ATTGTCGTGCTGCTGCCGTTGCTGCCAAGTATCTCAATCTTGATTGTTAT
CTTATTCTTCGCACCTCTAAGGTTCTGGTGGACCAAGATCCTGGTTTGAC
TGGCAATCTACTAGTTGAACGTTTAGTTGGAGCTCATATTGAACTTATCT
CTAAAGAAGAGTATTCAAAAATTGGGAGTGTGACTCTTACTAACATTTTA
AAAGAAAAGTTGCTAAAGGAAGGGAGAAGACCATATGTTATTCCTGTTGG
TGGGTCAAACTCAATAGGGACATGGGGTTATATTGAAGCAATTAAGGAGA
TTGAGCAGNCACTTCAGACTGGGACTGGTGGAGTGAAATTGATGATATTG
TTGTAGCTTGTGGCAGTGGAGGAACAATTGCTGGTTTGTCATTGGGGTCA
TGGCTTGGAACATTGAAAGCAAAAGTTCATGCTTTTTCTGTTTGTGATGA
CCCTGATTACTTCTACGACTATACCCAAGGGCTACTTGATGGGCTCAATG
CAGGAATTGACTCCCATGATTTGGTAAACATTCAAAATCCAAAGGTTCTG
GCTATAGCATCACATTTCGGAAGAACTAATTTTGTTAAAAAATTGGTGCC
GCAACGGGGGTAATTTTTGATCAGTTTAAAAGGGAAAAAATTGCCCTAGG
GGGAGTGGAAAAAAAAGGGCTTAAAAATCCCAAAAAAGGGGGGAAAGGGG
AGG
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