DY262577

Overview
NameDY262577
Unique NameDY262577
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1203
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_ACIAC (1-aminocyclopropane-1-carboxylate deaminase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=acdS PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 8.082e-17
Identity = 61/184 (33.15%), Postives = 93/184 (50.54%), Query Frame = 2
Query:  269 HLTPIPSHVFSLGHFPTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWGYIEAIKEIEQ 808
            +L   P H  + G  PTPIH  K    +L    E++ KR+D  SG+   GNK RKLE+L+ +A+  G D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L +      IG         E + + G +P+ IP G S +  G  G++   +E+ Q
Sbjct:    2 NLQKFPRHALTFG--PTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLIPEAIEGGYDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIEMSRIMGADVRLDAAG--FDIGIRPSWEQAMEDVRRAGGKPFPIPAGCSEHPRGGLGFVAFAEEVRQ 181          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_BURM1 (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=acdS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.379e-16
Identity = 61/182 (33.52%), Postives = 94/182 (51.65%), Query Frame = 2
Query:  269 HLTPIPSHVFSLGHFPTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWGYIEAIKEI 802
            +L   P +  + G  PTPI   K    +L    E++ KR+D  SG+   GNK RKLE+L+ DA+ Q AD +++IGG+QSN  R  A  A +L + C L+        D      GN+ + R++GA + L+   +   IG         E + + G RPY IP G S + +G  G++   +E+
Sbjct:    2 NLQRFPRYPLTFG--PTPIQPLKRLSEHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLIPDALEQRADTLVSIGGVQSNQTRQVAAVAAHLGMKCVLVQEHWVNYDDPVYDRVGNIQLSRMMGADVRLV--PDGFDIGIRRSWEEALESVKQAGGRPYPIPAGCSEHPLGGLGFVGFAEEV 179          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_PSEUD (1-aminocyclopropane-1-carboxylate deaminase OS=Pseudomonas sp. (strain ACP) GN=acdS PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.352e-16
Identity = 61/189 (32.28%), Postives = 93/189 (49.21%), Query Frame = 2
Query:  269 HLTPIPSHVFSLGHFPTPIHKWNL--PNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSN----SIGTWGYIEAIKEIEQXL 814
            +L   P +  + G  PTPI        +L     ++ KR+D  SG+   GNK RKLE+L+ +A+AQG D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L+   +   IG         E +   G +PY IP G S+     +G  G+ E ++  E  L
Sbjct:    2 NLQRFPRYPLTFG--PTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLV--PDGFDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAEL 186          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_BURXL (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia xenovorans (strain LB400) GN=acdS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.352e-16
Identity = 59/184 (32.07%), Postives = 92/184 (50.00%), Query Frame = 2
Query:  269 HLTPIPSHVFSLGHFPTPIHKWNL--PNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWGYIEAIKEIEQ 808
            +L   P +  + G  PTPI        +L     ++ KR+D  SG+   GNK RKLE+L+ + +AQG D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L+   +   IG         E +   G +PY IP G S + +G  G++   +E+ Q
Sbjct:    2 NLQRFPRYPLTFG--PTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEVLAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLV--PDGFDIGFRKSWEEALESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRQ 181          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_RALSO (1-aminocyclopropane-1-carboxylate deaminase OS=Ralstonia solanacearum GN=acdS PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.071e-16
Identity = 61/184 (33.15%), Postives = 93/184 (50.54%), Query Frame = 2
Query:  269 HLTPIPSHVFSLGHFPTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWGYIEAIKEIEQ 808
            +L   P H  + G  PTPI   K    +L    E++ KR+D  SG+   GNK RKLE+L+ + +A G D +++IGGIQSN  R  A  A +L L C L+        D      GN+ + R++GA + L +      IG         E + + G +P+ IP G S + +G  G++   +E+ Q
Sbjct:    2 NLNKHPRHPLTFG--PTPIQPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPEVLAGGYDTLVSIGGIQSNQTRQVAAVAAHLGLKCVLVQENWVNYADAVYDRVGNIELSRILGADVRLDAAG--FDIGIRPSWEQAMEDVRRAGGKPFPIPAGCSEHPLGGLGFVGFAEEVRQ 181          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_DIAST (1-aminocyclopropane-1-carboxylate deaminase OS=Diaphorobacter sp. (strain TPSY) GN=acdS PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.011e-16
Identity = 62/189 (32.80%), Postives = 94/189 (49.74%), Query Frame = 2
Query:  269 HLTPIPSHVFSLGHFPTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS----NSIGTWGYIEAIKEIEQXL 814
            +L   P H  + G  PTPI   K    +L    E++ KR+D  SG+   GNK RKLE+L+ +A+A G D +++IGGIQSN  R  A  A +L L C L+        D      GN+ + R++GA + L +      IG           + + G +P+ IP G S      +G  G+ E +++ E+ L
Sbjct:    2 NLQKFPRHPLTFG--PTPIQPLKRLSQHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLIPEAIAGGYDTLVSIGGIQSNQTRQVAAVAAHLGLKCVLVQENWVNYSDAVYDRVGNIEMSRILGADVRLDAAG--FDIGIRPSWEQAMADVKQAGGKPFPIPAGCSEHPYGGLGFVGFAEEVRQQEKEL 186          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_METPP (1-aminocyclopropane-1-carboxylate deaminase OS=Methylibium petroleiphilum (strain PM1) GN=acdS PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 8.936e-16
Identity = 60/182 (32.97%), Postives = 92/182 (50.55%), Query Frame = 2
Query:  269 HLTPIPSHVFSLGHFPTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWGYIEAIKEI 802
            +L   P H  + G  PTPI   K    +L    E++ KR+D  SG+   GNK RKLE+L+ +A+AQG D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L +      IG           +   G +P+ IP G S + +G  G++   +E+
Sbjct:    2 NLQRFPRHPLTFG--PTPIQPLKRLSAHLGGQVELYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIEMSRILGADVRLDAAG--FDIGIRPSWEQAMADVRAAGGKPFPIPAGCSEHRLGGLGFVGFAEEV 179          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_BRASB (1-aminocyclopropane-1-carboxylate deaminase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=acdS PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 8.936e-16
Identity = 55/168 (32.74%), Postives = 88/168 (52.38%), Query Frame = 2
Query:  317 TPIHKWNLPNLPH----NTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWGYIEAIKEI 802
            TPI   +LP L        +++ KRDD  SG+ + GNK+RKLE+++ DA+   AD +++IGG+QSNH R  A  A  + + C ++  +     D      GN+L+ RL+GA   ++   +   IG         + +   G +PY IP G S +  G  GY+   +E+
Sbjct:   17 TPIE--HLPRLTAALGGKVQIYAKRDDCNSGLAMGGNKLRKLEYIVPDAIESNADTLVSIGGVQSNHTRMVAATAAKIGMKCVVVQESWVPHEDAVYDRVGNILMTRLMGADSRIV--PDGFDIGIRKSWEDAIQSVKDAGGKPYGIPAGASVHKFGGLGYVGFAEEV 180          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_RALPJ (1-aminocyclopropane-1-carboxylate deaminase OS=Ralstonia pickettii (strain 12J) GN=acdS PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.167e-15
Identity = 61/184 (33.15%), Postives = 93/184 (50.54%), Query Frame = 2
Query:  269 HLTPIPSHVFSLGHFPTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWGYIEAIKEIEQ 808
            +L   P +  + G  PTPI   K    +L    E++ KR+D  SG+   GNK RKLE+L+ +A+  G D +++IGGIQSN  R  A  A +L L C L+        D      GN+ + R++GA + L S      IG         + + K G +P+ IP G S + +G  G++   +E+ Q
Sbjct:    2 NLQRFPRYPLTFG--PTPIQPLKRLSAHLGGKVELFAKREDCNSGLAFGGNKTRKLEYLIPEALEGGYDTLVSIGGIQSNQTRQVAAVAAHLGLKCVLVQENWVNYSDAVYDRVGNIEMSRIMGADVRLDSAG--FDIGIRPSWEQAMDDVRKRGGKPFPIPAGCSEHPLGGLGFVGFAEEVRQ 181          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_VARPD (1-aminocyclopropane-1-carboxylate deaminase OS=Variovorax paradoxus GN=acdS PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 1.524e-15
Identity = 61/189 (32.28%), Postives = 93/189 (49.21%), Query Frame = 2
Query:  269 HLTPIPSHVFSLGHFPTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS----NSIGTWGYIEAIKEIEQXL 814
            +L   P HV + G  PTPI   K    +L    +++ KR+D  SG+   GNK RKLE+L+ +A+  G D +++IGGIQSN  R  A  A +L L C L+        D      GN+ + R++GA + L +      IG           +   G +P+ IP G S      +G+ G+ E +++ E  L
Sbjct:    2 NLKKFPRHVLTFG--PTPIQPLKRLSAHLGGKVDLYAKREDCNSGLAFGGNKTRKLEYLIPEALEGGYDTLVSIGGIQSNQTRQVAAVAAHLGLKCVLVQENWVNYSDAVYDRVGNIEMSRIMGADVRLDAAG--FDIGIRQSWEQAMADVRAAGGKPFPIPAGCSEHPRGGLGSVGFAEEVRQQEAEL 186          
The following BLAST results are available for this feature:
BLAST of DY262577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
1A1D_ACIAC8.082e-1733.151-aminocyclopropane-1-carboxylate deaminase OS=Aci... [more]
1A1D_BURM11.379e-1633.521-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]
1A1D_PSEUD2.352e-1632.281-aminocyclopropane-1-carboxylate deaminase OS=Pse... [more]
1A1D_BURXL2.352e-1632.071-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]
1A1D_RALSO3.071e-1633.151-aminocyclopropane-1-carboxylate deaminase OS=Ral... [more]
1A1D_DIAST4.011e-1632.801-aminocyclopropane-1-carboxylate deaminase OS=Dia... [more]
1A1D_METPP8.936e-1632.971-aminocyclopropane-1-carboxylate deaminase OS=Met... [more]
1A1D_BRASB8.936e-1632.741-aminocyclopropane-1-carboxylate deaminase OS=Bra... [more]
1A1D_RALPJ1.167e-1533.151-aminocyclopropane-1-carboxylate deaminase OS=Ral... [more]
1A1D_VARPD1.524e-1532.281-aminocyclopropane-1-carboxylate deaminase OS=Var... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100BE01RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262577 ID=DY262577; Name=DY262577; organism=Citrus clementina; type=EST; length=1203bp
TTTTGGATTTTGGTAGTGTCATGCAGCAGCAGCAGCGGTTAAAGCAAATG
GAATCATGTTGTTGTGCAGCAGCTGCAGCGGTAACCTTCTGAGTTCAATT
GTTTCTCCAAAATTAAGACAACGCCTAATCAGAGTCTCTGAGTCTCAGCT
TCATCATCATCAGCAGCATAAAATCAAAATGGAAAGAAAAGAGAGCGGTA
ATGATAGTGATGCTTTCGGTTTCAAATTCCTCACCAAAACCCCATACGCT
TCTCCTTCTTGGGCTTCTCATCTCACCCCCATCCCTTCTCACGTCTTCTC
TCTCGGCCACTTTCCAACTCCAATTCACAAATGGAACCTCCCTAATTTGC
CCCATAACACTGAGGTCTGGCTCAAGCGTGATGACCTTTCCGGCATGCAA
TTGAGTGGAAACAAGGTAAGGAAATTAGAGTTTTTGATGGCAGATGCAGT
GGCTCAAGGTGCTGATTGCATCATCACCATTGGAGGCATCCAAAGCAATC
ATTGTCGTGCTGCTGCCGTTGCTGCCAAGTATCTCAATCTTGATTGTTAT
CTTATTCTTCGCACCTCTAAGGTTCTGGTGGACCAAGATCCTGGTTTGAC
TGGCAATCTACTAGTTGAACGTTTAGTTGGAGCTCATATTGAACTTATCT
CTAAAGAAGAGTATTCAAAAATTGGGAGTGTGACTCTTACTAACATTTTA
AAAGAAAAGTTGCTAAAGGAAGGGAGAAGACCATATGTTATTCCTGTTGG
TGGGTCAAACTCAATAGGGACATGGGGTTATATTGAAGCAATTAAGGAGA
TTGAGCAGNCACTTCAGACTGGGACTGGTGGAGTGAAATTGATGATATTG
TTGTAGCTTGTGGCAGTGGAGGAACAATTGCTGGTTTGTCATTGGGGTCA
TGGCTTGGAACATTGAAAGCAAAAGTTCATGCTTTTTCTGTTTGTGATGA
CCCTGATTACTTCTACGACTATACCCAAGGGCTACTTGATGGGCTCAATG
CAGGAATTGACTCCCATGATTTGGTAAACATTCAAAATCCAAAGGTTCTG
GCTATAGCATCACATTTCGGAAGAACTAATTTTGTTAAAAAATTGGTGCC
GCAACGGGGGTAATTTTTGATCAGTTTAAAAGGGAAAAAATTGCCCTAGG
GGGAGTGGAAAAAAAAGGGCTTAAAAATCCCAAAAAAGGGGGGAAAGGGG
AGG
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