DY262577

Overview
NameDY262577
Unique NameDY262577
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1203
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_PSES0 (1-aminocyclopropane-1-carboxylate deaminase OS=Pseudomonas sp. (strain 6G5) GN=acdS PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.524e-15
Identity = 54/171 (31.58%), Postives = 90/171 (52.63%), Query Frame = 2
Query:  317 TPIHKWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS----NSIGTWGYIEAIKEIEQXL 814
            TP+ + +  +L    E++ KR+D  SG+   GNK RKLE+L+ +A+ QG D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L +      IG           ++++G +P+ IP G S      +G  G+ E +++ E+ L
Sbjct:   19 TPLKRLS-QHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLIPEAIEQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIEMSRIMGADVRLDAAG--FDIGIRPSWEKAMSDVVEQGGKPFPIPAGCSEHPYGGLGFVGFAEEVRQQEKEL 186          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_PSEFL (1-aminocyclopropane-1-carboxylate deaminase OS=Pseudomonas fluorescens GN=acdS PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.991e-15
Identity = 55/171 (32.16%), Postives = 89/171 (52.05%), Query Frame = 2
Query:  317 TPIHKWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS----NSIGTWGYIEAIKEIEQXL 814
            TP+ + +  +L    E++ KR+D  SG+   GNK RKLE+L+ +A+ QG D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L +      IG           +++ G +P+ IP G S      +G  G+ E ++E E+ L
Sbjct:   19 TPLKRLS-EHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLIPEALEQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIEMSRIMGADVRLDAAG--FDIGIRPSWEKAMNDVVERGGKPFPIPAGCSEHPYGGLGFVGFAEEVREQEKQL 186          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_PSEPU (1-aminocyclopropane-1-carboxylate deaminase OS=Pseudomonas putida GN=acdS PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.600e-15
Identity = 54/171 (31.58%), Postives = 89/171 (52.05%), Query Frame = 2
Query:  317 TPIHKWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS----NSIGTWGYIEAIKEIEQXL 814
            TP+ + +  +L    E++ KR+D  SG+   GNK RKLE+L+ +A+ QG D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L +      IG           +++ G +P+ IP G S      +G  G+ E +++ E+ L
Sbjct:   19 TPLKRLS-EHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLIPEAIEQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIEMSRIMGADVRLDAAG--FDIGIRPSWEKAMSDVVERGGKPFPIPAGCSEHPYGGLGFVGFAEEVRQQEKEL 186          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_ENTCL (1-aminocyclopropane-1-carboxylate deaminase OS=Enterobacter cloacae GN=acdS PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.435e-15
Identity = 53/166 (31.93%), Postives = 88/166 (53.01%), Query Frame = 2
Query:  317 TPIHKWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWGYIEAIKEIEQ 808
            TP+ + +  +L    E++ KR+D  SG+   GNK RKLE+L+ +A+ QG D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L +      IG           ++++G +P+ IP G S +  G  G++   K++ Q
Sbjct:   19 TPLKRLS-QHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLIPEAIEQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIEMSRIMGADVRLDAAG--FDIGIRPSWEKAMSDVVEQGGKPFPIPAGCSEHPYGGLGFVGFAKKLRQ 181          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_PSESM (1-aminocyclopropane-1-carboxylate deaminase OS=Pseudomonas syringae pv. tomato GN=acdS PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 8.364e-14
Identity = 55/183 (30.05%), Postives = 92/183 (50.27%), Query Frame = 2
Query:  269 HLTPIPSHVFSLGHFP-TPIHKWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWGYIEAIKEIEQ 808
            +L+    +  + G  P TP+ + +  +L    +++ KR+D  SG+   GNK RKLE+L+ +A+  G D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L S      IG           +++ G +P+ IP G S +  G  G++    E+ Q
Sbjct:    2 NLSKFKRYPLTFGPSPITPLKRLS-EHLGGKVDLYAKREDCNSGLAFGGNKTRKLEYLVPEAIEGGYDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDALYDRVGNIEMSRIMGADVRLDSAG--FDIGIRPSWEKAMADVVESGGKPFPIPAGCSEHPYGGLGFVRFADEVRQ 181          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_PSE14 (1-aminocyclopropane-1-carboxylate deaminase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=acdS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.092e-13
Identity = 56/183 (30.60%), Postives = 91/183 (49.73%), Query Frame = 2
Query:  269 HLTPIPSHVFSLGHFP-TPIHKWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWGYIEAIKEIEQ 808
            +L+    +  + G  P TP+ + +  +L    E++ KR+D  SG+   GNK RKLE+L+ +A+  G D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L S      IG           + + G +P+ IP G S +  G  G++    E+ Q
Sbjct:    2 NLSKFKRYPLTFGPSPITPLKRLS-EHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPEAIDGGYDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDALYDRVGNIEMSRIMGADVRLDSAG--FDIGIRPSWEKAMSDVEESGGKPFPIPAGCSEHPYGGLGFVRFADEVRQ 181          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_PSEU2 (1-aminocyclopropane-1-carboxylate deaminase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=acdS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.427e-13
Identity = 56/183 (30.60%), Postives = 91/183 (49.73%), Query Frame = 2
Query:  269 HLTPIPSHVFSLGHFP-TPIHKWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWGYIEAIKEIEQ 808
            +L+    +  + G  P TP+ + +  +L    E++ KR+D  SG+   GNK RKLE+L+ +A+  G D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L S      IG           + + G +P+ IP G S +  G  G++    E+ Q
Sbjct:    2 NLSKFKRYPLTFGPSPITPLKRLS-EHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPEAIDGGYDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDALYDRVGNIEMSRIMGADVRLDSAG--FDIGIRPSWEKAMADVEESGGKPFPIPAGCSEHPYGGLGFVRFADEVRQ 181          
BLAST of DY262577 vs. ExPASy Swiss-Prot
Match: 1A1D_WILSA (1-aminocyclopropane-1-carboxylate deaminase OS=Williopsis saturnus PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.022e-11
Identity = 60/187 (32.09%), Postives = 94/187 (50.27%), Query Frame = 2
Query:  314 PTPIHKWNL--PNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGL---TGNLLVERLVGAHIELISKEEYSKIG-SVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWGYIEAIKE-IEQXLQTGTGGVKLMI 847
            P+PI   N    +L     V+ KR+D  SG+   GNK+RKLE+++ D V      +++IGG QSN  R  A  A  L   C LI      + + +  +    GN+ + R++GA + +I  E+   IG   +  N L+E L   G +PY IP G S +  G  G++    E I Q ++ G    K+++
Sbjct:   15 PSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYTHLVSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVI--EDGFDIGMRKSFANALQE-LEDAGHKPYPIPAGCSEHKYGGLGFVGFADEVINQEVELGIKFDKIVV 198          
The following BLAST results are available for this feature:
BLAST of DY262577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
1A1D_PSES01.524e-1531.581-aminocyclopropane-1-carboxylate deaminase OS=Pse... [more]
1A1D_PSEFL1.991e-1532.161-aminocyclopropane-1-carboxylate deaminase OS=Pse... [more]
1A1D_PSEPU2.600e-1531.581-aminocyclopropane-1-carboxylate deaminase OS=Pse... [more]
1A1D_ENTCL4.435e-1531.931-aminocyclopropane-1-carboxylate deaminase OS=Ent... [more]
1A1D_PSESM8.364e-1430.051-aminocyclopropane-1-carboxylate deaminase OS=Pse... [more]
1A1D_PSE141.092e-1330.601-aminocyclopropane-1-carboxylate deaminase OS=Pse... [more]
1A1D_PSEU21.427e-1330.601-aminocyclopropane-1-carboxylate deaminase OS=Pse... [more]
1A1D_WILSA1.022e-1132.091-aminocyclopropane-1-carboxylate deaminase OS=Wil... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100BE01RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262577 ID=DY262577; Name=DY262577; organism=Citrus clementina; type=EST; length=1203bp
TTTTGGATTTTGGTAGTGTCATGCAGCAGCAGCAGCGGTTAAAGCAAATG
GAATCATGTTGTTGTGCAGCAGCTGCAGCGGTAACCTTCTGAGTTCAATT
GTTTCTCCAAAATTAAGACAACGCCTAATCAGAGTCTCTGAGTCTCAGCT
TCATCATCATCAGCAGCATAAAATCAAAATGGAAAGAAAAGAGAGCGGTA
ATGATAGTGATGCTTTCGGTTTCAAATTCCTCACCAAAACCCCATACGCT
TCTCCTTCTTGGGCTTCTCATCTCACCCCCATCCCTTCTCACGTCTTCTC
TCTCGGCCACTTTCCAACTCCAATTCACAAATGGAACCTCCCTAATTTGC
CCCATAACACTGAGGTCTGGCTCAAGCGTGATGACCTTTCCGGCATGCAA
TTGAGTGGAAACAAGGTAAGGAAATTAGAGTTTTTGATGGCAGATGCAGT
GGCTCAAGGTGCTGATTGCATCATCACCATTGGAGGCATCCAAAGCAATC
ATTGTCGTGCTGCTGCCGTTGCTGCCAAGTATCTCAATCTTGATTGTTAT
CTTATTCTTCGCACCTCTAAGGTTCTGGTGGACCAAGATCCTGGTTTGAC
TGGCAATCTACTAGTTGAACGTTTAGTTGGAGCTCATATTGAACTTATCT
CTAAAGAAGAGTATTCAAAAATTGGGAGTGTGACTCTTACTAACATTTTA
AAAGAAAAGTTGCTAAAGGAAGGGAGAAGACCATATGTTATTCCTGTTGG
TGGGTCAAACTCAATAGGGACATGGGGTTATATTGAAGCAATTAAGGAGA
TTGAGCAGNCACTTCAGACTGGGACTGGTGGAGTGAAATTGATGATATTG
TTGTAGCTTGTGGCAGTGGAGGAACAATTGCTGGTTTGTCATTGGGGTCA
TGGCTTGGAACATTGAAAGCAAAAGTTCATGCTTTTTCTGTTTGTGATGA
CCCTGATTACTTCTACGACTATACCCAAGGGCTACTTGATGGGCTCAATG
CAGGAATTGACTCCCATGATTTGGTAAACATTCAAAATCCAAAGGTTCTG
GCTATAGCATCACATTTCGGAAGAACTAATTTTGTTAAAAAATTGGTGCC
GCAACGGGGGTAATTTTTGATCAGTTTAAAAGGGAAAAAATTGCCCTAGG
GGGAGTGGAAAAAAAAGGGCTTAAAAATCCCAAAAAAGGGGGGAAAGGGG
AGG
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