DY262669

Overview
NameDY262669
Unique NameDY262669
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1210
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY262669 vs. ExPASy Swiss-Prot
Match: Y5487_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g48740 OS=Arabidopsis thaliana GN=At5g48740 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.674e-11
Identity = 55/179 (30.73%), Postives = 80/179 (44.69%), Query Frame = 3 
Query:  222 VSILFFDLLLRVASNAEGDALNALKTNLADPNNVLQSWDATLVNPCTWFHVTCNSENSVTRVDLGNANXXXXXXXXXXXXTNLQYLELYSNNISGKVPE----------------------ELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQV 692
            VS L    +L++   A    ++ALK         L  W      P  W H+ C   N VT + L   N             +L+ L+L++ +++G +                        EL +L NL  LDL  N+L G +P TLGKL KLR L L NN+L+G +P+SL N+  L+V
Sbjct:  330 VSALEVYEILQIPPEASSTTVSALKVIEQFTGQDL-GWQDDPCTPLPWNHIECEG-NRVTSLFLSKINLRSISPTFGDLL-DLKTLDLHNTSLTGAIQNVGSLKDLQKLNLSFNQLESFGSELEDLVNLEVLDLQNNSLQGSVPETLGKLKKLRLLNLENNNLVGPLPQSL-NITGLEV 504
[Close]
BLAST of DY262669 vs. ExPASy Swiss-Prot
Match: PSKR2_ARATH (Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.674e-11
Identity = 37/90 (41.11%), Postives = 51/90 (56.67%), Query Frame = 3 
Query:  462 TNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP 731
            + L+ L +  N  S  +P+  GNLT L  LD+  N  +G  P +L + SKLR L L NNSL G I  + T    L VLDL++N  +G +P
Sbjct:  256 SGLKSLLISENRFSDVIPDVFGNLTQLEHLDVSSNKFSGRFPPSLSQCSKLRVLDLRNNSLSGSINLNFTGFTDLCVLDLASNHFSGPLP 345
The following BLAST results are available for this feature:
BLAST of DY262669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
Y5487_ARATH6.674e-1130.73Probable LRR receptor-like serine/threonine-protei... [more]
PSKR2_ARATH6.674e-1141.11Phytosulfokine receptor 2 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100CD12RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262669 ID=DY262669; Name=DY262669; organism=Citrus clementina; type=EST; length=1210bp
CTTTTCGCGATTCCAATCCAATCTCGTCACTTAGCAAAGCGATTACTGTT
TCGCTGGATAAACAAAGAATCTTTCTGTTCTGCCAATTATTGTTTCAAGT
AAATTGATGAGTCAAAGGGGTTCTTGATTTCAATTTTTTATTGTATTGAT
GGCGAATTTGGAATTCTAGCTTGACTCAAATTGAAATGGGAAAATTGGAG
CGCGTGGTTTGGGCTTTTTTTGTGTCAATTTTGTTTTTTGATTTGTTGTT
GAGAGTTGCTTCGAATGCTGAAGGTGACGCTTTGAATGCATTGAAGACCA
ATTTAGCTGATCCTAACAATGTTCTACAGAGTTGGGATGCCACCCTTGTC
AACCCGTGCACATGGTTTCATGTTACTTGCAATAGTGAAAATAGTGTTAC
AAGAGTTGATCTTGGCAATGCAAATCTATCTGGTCAACTGGTTTCACAGC
TTGGTCAACTAACAAATTTGCAGTATTTGGAACTCTATAGTAATAACATT
AGTGGAAAGGTTCCTGAGGAGCTTGGCAATTTGACAAACTTGGTTAGCTT
GGATCTGTACTTGAACAATTTAAATGGTCCCATTCCAACGACACTGGGCA
AGCTGTCAAAACTACGTTTCCTGCGTCTCAACAATAACAGCTTGATGGGA
GAAATTCCTAGGTCATTAACTAATGTTAATTCACTGCAAGTCCTGGATCT
TTCAAATAATAAACTTACAGGAGATATTCCGACCAATGGTTCCTTTTCAC
TATTCACTCCAATCAGTTTTGCTAATAATCAGCTCAATAATCCTCCTCCT
TCTCCTCCTCCCCCACTTCAACCAACACCACCAACAGCTTCTTCAGGTAA
CAGCGCCACTGGAGCTATTGCCGGGGGAGTCGCTGCTGGTGCTGCTCTGC
TGTTTGCTGCCCCTGGCATTGCGCTTGCTAATTGAAAAAAAGGAAACCAG
AAGATCATTTCTTTGACGTACCTGCTGAAAAAGACCCAAAATTTCATTTG
GGACAGCTCAAAAGGTTCTCTCTACTTGAAATTACAAGTTGCAACTGAAA
ATTTTACCAACCAAAAAATTTTTGGGTAAAAAGTGGAATTGGGAAAGGTT
TAAAAAGGGAGCCTTAACTGAATGGCTTTCTTGGGGGCAGTGAAAAAAAT
AAAAAGAAGAAGCGAAACCCCGGGGGGGGGGGAGCTTCCATTTTACAAAA
GAAGGGAAAA
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