DY262682

Overview
NameDY262682
Unique NameDY262682
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1148
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262682 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 6.389e-24
Identity = 78/216 (36.11%), Postives = 113/216 (52.31%), Query Frame = 1
Query:  259 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGA-NMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQSWDDHWIF 903
            EL S SF+RA  AEF AT  +++      +G S   +    + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA  YM  Q LGA+ GAAV+  +  +   + G  A N L  G S G     EI  T   V  +F+  D +RN R   V     L +GF++ L HL  +  TG G+NPARS   A++    +++ +HW++
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWTP-GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHPGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVY 204          
BLAST of DY262682 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.049e-23
Identity = 75/215 (34.88%), Postives = 109/215 (50.70%), Query Frame = 1
Query:  283 RAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVG-IQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLG------AEIVGTFVLVYTVFSAT-DAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQSWDDHWIF 903
            RA I+EF+AT +F++    +V+ + K     ST G +  +A A    +   V     ISGGH+NPAVTFG  +  ++SL RAV Y + Q LGA+    +++        +  GG  M   G++   G+G       E V TF L+Y  ++   D KR     HV  +APL +GF +    LA  P  G G+NPAR  G AL+      W  HW++
Sbjct:   26 RAAISEFIATAIFVFAAEGSVLSLGKMYHDMSTAGGLVAVALAHALALAVAVAVAVNISGGHVNPAVTFGALVGGRVSLVRAVLYWVAQLLGAVAATLLLR--------LATGG--MRPPGFALASGVGDWHAVLLEAVMTFGLMYAYYATVIDPKR----GHVGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPALV---GWRWRHHWVY 223          

HSP 2 Score: 21.1718 bits (43), Expect = 1.049e-23
Identity = 5/15 (33.33%), Postives = 9/15 (60.00%), Query Frame = 2
Query:  902 FWAGPFIGSSACSFI 946
            +W GPF+G+     +
Sbjct:  223 YWLGPFLGAGLAGLV 237          
BLAST of DY262682 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.366e-23
Identity = 76/213 (35.68%), Postives = 115/213 (53.99%), Query Frame = 1
Query:  283 RAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGA---NMLSKGYSKGDGLGAEIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQSWDDHWIF 903
            RA +AEF++T LF++  V + +  +K  S +   T G+  IA   G  +F  V   A ISGGH+NPAVTFGL +  ++++   VFY I Q LG+     ++K        + GG A   + ++ G    +G+  EI+ TF LVYTV+ +A D K+ +    +  +APL IG  V    LA  P +G  +NPARS G A+       +  HW++
Sbjct:   19 RAYLAEFISTLLFVFAGVGSAIAYAKLTSDAALDTPGLVAIAVCHGFALFVAVAIGANISGGHVNPAVTFGLAVGGQITVITGVFYWIAQLLGSTAACFLLK-------YVTGGLAVPTHSVAAGLGSIEGVVMEIIITFALVYTVYATAADPKKGS----LGTIAPLAIGLIVGANILAAGPFSGGSMNPARSFGPAVAAG---DFSGHWVY 217          

HSP 2 Score: 21.557 bits (44), Expect = 1.366e-23
Identity = 7/18 (38.89%), Postives = 8/18 (44.44%), Query Frame = 2
Query:  902 FWAGPFIGSSACSFISSN 955
            +W GP IG      I  N
Sbjct:  217 YWVGPLIGGGLAGLIYGN 234          
BLAST of DY262682 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 1.423e-23
Identity = 76/216 (35.19%), Postives = 112/216 (51.85%), Query Frame = 1
Query:  259 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGA-NMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQSWDDHWIF 903
            EL S SF+RA  AEF AT  +++  +      S  +     + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA  Y+  Q LGA+ GAAV+  +  +   + G  A N L  G S G     EI  T   V  +F+  D +RN R   V     L +GF++ L HL  +  TG G+NPARS   A++    +++ +HW++
Sbjct:    1 ELRSASFWRAIFAEFFATLFYVFFGL-----GSSLRWAPGPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFSNHWVY 202          
BLAST of DY262682 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 1.423e-23
Identity = 77/216 (35.65%), Postives = 113/216 (52.31%), Query Frame = 1
Query:  259 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGA-NMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQSWDDHWIF 903
            EL S SF+RA  AEF AT  +++      +G S   +    + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA  Y+  Q LGA+ GAAV+  +  +   + G  A N L  G S G     EI  T   V  +F+  D +RN R   V     L +GF++ L HL  +  TG G+NPARS   A++    +++ +HW++
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAP-GPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFSNHWVY 204          
BLAST of DY262682 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.747e-23
Identity = 76/216 (35.19%), Postives = 110/216 (50.93%), Query Frame = 1
Query:  283 RAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGA------EIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQSWDDHWIF 903
            RA +AEF +TF+F++    + + + K    S  S   +  +A A    +FA V  +  +SGGH+NPAV+FG  +  ++S+ RAV+Y I Q LG+I  A V++              NM   G+    G+G       E+V TF L+YTV+ +A D KR A    V  +APL IG  V    L   P  G  +NPA + G +L+      W  HWIF
Sbjct:   21 RASLAEFASTFIFVFAGEGSGLALVKIYQDSAFSAGELLALALAHAFALFAAVSASMHVSGGHVNPAVSFGALIGGRISVIRAVYYWIAQLLGSIVAALVLRLVTN----------NMRPSGFHVSPGVGVGHMFILEVVMTFGLMYTVYGTAIDPKRGA----VSYIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLV---GWQWHQHWIF 219          

HSP 2 Score: 22.7126 bits (47), Expect = 1.747e-23
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 3
Query:  921 LGAALAALYHQIVIRPI 971
            LGAALAAL ++  + PI
Sbjct:  225 LGAALAALVYEYAVIPI 241          

HSP 3 Score: 21.1718 bits (43), Expect = 1.747e-23
Identity = 5/15 (33.33%), Postives = 10/15 (66.67%), Query Frame = 2
Query:  902 FWAGPFIGSSACSFI 946
            FW GP +G++  + +
Sbjct:  219 FWVGPLLGAALAALV 233          
BLAST of DY262682 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.309e-23
Identity = 72/219 (32.88%), Postives = 114/219 (52.05%), Query Frame = 1
Query:  283 RAGIAEFVATFLFLYITVLTVMGVSK-------SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVK----GFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQSWDDHWIF 903
            RA +AEF++TF+F++    +++ + K            +  G+  +A A    +FA V     +SGGH+NPAVTF   +  ++S+ RA++Y + Q +GAI    +++    G +   +         ++ G S+  GL  EI+ TF LVY V+S A D KR +    + I+APL IG  V    L   P  G  +NPAR+ G AL+      W +HWI+
Sbjct:   24 RATLAEFLSTFVFVFAGEGSILALDKLYWDTAAHTGTNTPGGLVLVALAHALALFAAVSAAINVSGGHVNPAVTFAALIGGRISVIRAIYYWVAQLIGAILACLLLRLATNGLRPVGFH--------VASGVSELHGLLMEIILTFALVYVVYSTAIDPKRGS----IGIIAPLAIGLIVGANILVGGPFDGASMNPARAFGPALV---GWRWSNHWIY 227          

HSP 2 Score: 23.0978 bits (48), Expect = 2.309e-23
Identity = 7/15 (46.67%), Postives = 10/15 (66.67%), Query Frame = 2
Query:  902 FWAGPFIGSSACSFI 946
            +W GPFIG +  + I
Sbjct:  227 YWVGPFIGGALAALI 241          
BLAST of DY262682 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.171e-23
Identity = 75/206 (36.41%), Postives = 109/206 (52.91%), Query Frame = 1
Query:  256 GELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALI 864
            G+  S S  +A ++EF+AT LF++  V + +  +K  S       G+  IA A    +F  V   A ISGGH+NPAVT GL +   ++L    FY I QCLG+I    ++      +     G    +S G    +G+  EIV TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NPARS G A++
Sbjct:   10 GDSFSVSSLKAYLSEFIATLLFVFAGVGSAVAFAKLTSDGALDPAGLVAIAIAHAFALFVGVSIAANISGGHLNPAVTLGLAIGGNITLITGFFYWIAQCLGSIVACLLLVFVTNGKSVPTHG----VSAGLGAVEGVVMEIVVTFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVV 207          
BLAST of DY262682 vs. ExPASy Swiss-Prot
Match: TIP32_MAIZE (Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 5.090e-23
Identity = 73/216 (33.80%), Postives = 107/216 (49.54%), Query Frame = 1
Query:  283 RAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTV----GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGAN----MLSKGYSKGDGLGAEIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQSWDDHWIF 903
            RA I+EF+AT +F++    +V+ + K     ST+    G+  +A A    +   V     +SGGH+NPAVTFG  +  ++SL RAV Y   Q LGA+    +++        +  GGA      L+ G   G  +  E V TF  VY  + +  D KR     H+  +APL +GF +    LA  P  G G+NPAR  G AL+      W  HW++
Sbjct:   28 RAAISEFIATAIFVFAAEGSVLSLGKMYHDHSTISTAGGLVAVALAHALGLAVAVAVAVNVSGGHVNPAVTFGALVGGRVSLVRAVLYWAAQLLGAVAATLLLR--------LATGGARPPGFALASGVGDGHAVLLEAVMTFGFVYAYYATVVDPKR----GHLGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPALV---GWRWRHHWVY 228          

HSP 2 Score: 21.1718 bits (43), Expect = 5.090e-23
Identity = 5/15 (33.33%), Postives = 9/15 (60.00%), Query Frame = 2
Query:  902 FWAGPFIGSSACSFI 946
            +W GPF+G+     +
Sbjct:  228 YWLGPFLGAGLAGLV 242          
BLAST of DY262682 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 5.090e-23
Identity = 73/215 (33.95%), Postives = 109/215 (50.70%), Query Frame = 1
Query:  283 RAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVG-IQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLG------AEIVGTFVLVYTVFSAT-DAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQSWDDHWIF 903
            RA I+EF+AT +F++    +++ + K     ST G +  ++ A    +   V     ISGGH+NPA+TFG  L  +LSL RA+FY + Q LGA+    +++        +  GG  M   G++   G+G       E   TF L+Y  ++   D KR     HV  +APL +GF +    LA  P  G G+NPAR  G AL+      W  HW++
Sbjct:   27 RAAISEFLATAIFVFAAEGSILSLGKLYQDMSTPGGLVAVSLAHALALAVAVAVAVNISGGHVNPAITFGALLGGRLSLIRALFYWLAQLLGAVVATLLLR--------LTTGG--MRPPGFALASGVGDWHAVLLEATMTFGLMYAYYATVIDPKR----GHVGTIAPLAVGFLLGANMLAGGPFDGAGMNPARVFGPALV---GWRWRHHWVY 224          

HSP 2 Score: 21.1718 bits (43), Expect = 5.090e-23
Identity = 5/15 (33.33%), Postives = 9/15 (60.00%), Query Frame = 2
Query:  902 FWAGPFIGSSACSFI 946
            +W GPF+G+     +
Sbjct:  224 YWLGPFVGAGLAGLL 238          
The following BLAST results are available for this feature:
BLAST of DY262682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
MIP_CANFA6.389e-2436.11Lens fiber major intrinsic protein OS=Canis famili... [more]
TIP31_MAIZE1.049e-2334.88Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
TIP21_ARATH1.366e-2335.68Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
MIP_RAT1.423e-2335.19Lens fiber major intrinsic protein (Fragment) OS=R... [more]
MIP_MOUSE1.423e-2335.65Lens fiber major intrinsic protein OS=Mus musculus... [more]
TIPA_PHAVU1.747e-2335.19Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
TIP32_ARATH2.309e-2332.88Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]
TIP23_ARATH3.171e-2336.41Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]
TIP32_MAIZE5.090e-2333.80Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1[more]
TIP31_ORYSJ5.090e-2333.95Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100CF02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262682 ID=DY262682; Name=DY262682; organism=Citrus clementina; type=EST; length=1148bp
CACGTTACAAATACCCCCCGGCTCCCTCACTCTTAAATCGTGAGCCCGTT
GTGCCATTTATTGATTCAATTCACTCCCAAGAAACTTGAACCTATCTTGT
CTATTAATTTTCACAAGAACATAATGGAGGGCAAAGAAGAGGATGTAAGA
GTGGGAGCAAATAGGTATCGAGAGAGTCAACCTATTGGAACCGCGGCTCA
GACTCAGGATGTGAAGGATTACACGGAGCCACCTCCGGCGCCGCTCTTTG
AGCCCGGCGAATTATCGTCGTGGTCCTTTTACAGGGCTGGCATTGCGGAG
TTTGTGGCCACGTTCTTGTTTCTTTACATCACTGTTCTAACAGTGATGGG
CGTGTCCAAATCCAAAAGCAAATGTTCCACTGTGGGAATCCAGGGCATCG
CTTGGGCTTTTGGCGGCATGATCTTCGCTCTAGTCTACTGCACTGCTGGC
ATTTCAGGGGGTCACATTAACCCAGCGGTGACATTCGGGCTGTTCTTGGC
CCGAAAGCTGTCGCTTACCAGGGCAGTTTTTTACATGATAATGCAGTGTT
TAGGGGCCATATGCGGTGCCGCCGTTGTAAAGGGCTTTCAGAAAAGCCAA
TATGAAATGCTAGGCGGCGGTGCCAACATGCTCAGCAAAGGCTACAGCAA
GGGAGATGGCCTTGGAGCCGAGATTGTTGGTACCTTTGTTCTTGTTTACA
CTGTCTTCTCGGCCACTGATGCCAAGCGCAATGCCCGCGATTCTCATGTT
CCTATATTGGCACCCCTGCCCATTGGATTTGCTGTGTTTTTGGTGCACTT
GGCAACAATTCCTATCACAGGAACAGGCATTAACCCAGCTAGGAGTCTTG
GCGCAGCTCTGATATACAACAAGGACCAAAGCTGGGATGATCATTGGATT
TTTCTGGGCAGGACCATTCATTGGGAGCAGCGCTTGCAGCTTTATATCAT
CAAATTGTGATCAGGCCCATCCCATTCAATTCCAATGACTAATCATAATT
TCCATTCGTTCATTAATAACCATGGAAGGAATTAATTTGCCACCTGGCCC
TGGGTTTGCCTTTAATTATCCGCCGTAAAAGTTACAACCCTTCGGGGGTT
GGGGGTTTTTGAATTTGGTAAGAAAAAACATGGTCCAGGGCCAAATCC
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