DY262683

Overview
NameDY262683
Unique NameDY262683
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1323
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY262683 vs. ExPASy Swiss-Prot
Match: PSMA_THESM (Proteasome subunit alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=psmA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 7.001e-25
Identity = 61/137 (44.53%), Postives = 89/137 (64.96%), Query Frame = 3 
Query:  447 KIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYK-ETSGQETVKLAIRALLEV 854
            KI  +D+HIA A +G+ ADARVLV+RAR+E Q +RLT  +PV +  + + I  L+Q +TQ GGVRPFG + L+ G +     P L++TDPSG +  WKA A G   N+     E+ Y+ E + +E +KLA+ AL ++
Sbjct:   68 KIFQIDDHIAAASSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQMHTQYGGVRPFGAALLMAGVNE---KPELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEKYRDEMTLEEAIKLAVLALSKI 201

HSP 2 Score: 69.3218 bits (168), Expect = 5.754e-11
Identity = 36/53 (67.92%), Postives = 41/53 (77.36%), Query Frame = 2 
Query:   47 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKL 205
            A YDRAITVFSPDG LFQV+YA EAV++G  AVGV+  D VVL VEK+   KL
Sbjct:    8 AGYDRAITVFSPDGRLFQVQYAREAVKRGATAVGVKCKDGVVLAVEKRVTSKL 60
[Close]
BLAST of DY262683 vs. ExPASy Swiss-Prot
Match: PSA4_SPIOL (Proteasome subunit alpha type-4 OS=Spinacia oleracea GN=PAC1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.194e-24
Identity = 53/134 (39.55%), Postives = 89/134 (66.42%), Query Frame = 3 
Query:  447 KIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYK-ETSGQETVKLAIRAL 845
            K+  +D+H+A A AG+ +DA +L+N AR++ Q +  + ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D   G   LY +DPSG +  WKA A G N+ + +  L+++YK + + ++ VKLA++AL
Sbjct:   64 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFSYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGF-QLYMSDPSGNYGGWKATAIGANNQAAQSMLKQDYKDDVTREDAVKLALKAL 196
[Close]
BLAST of DY262683 vs. ExPASy Swiss-Prot
Match: PSMA_THEK1 (Proteasome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=psmA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.037e-24
Identity = 61/134 (45.52%), Postives = 88/134 (65.67%), Query Frame = 3 
Query:  447 KIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSGQ-ETVKLAIRAL 845
            KI  +D+HIA A +G+ ADARVLV+RAR+E Q +RLT  +PV +  + + I  L+Q +TQ GGVRPFG + L+ G +     P L++TDPSG +  WKA A G   N+     E++Y++  G+ + +KLAI AL
Sbjct:   68 KIFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNE---KPELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYRDDIGKDDAIKLAILAL 198

HSP 2 Score: 68.9366 bits (167), Expect = 7.514e-11
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 2 
Query:   47 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKL 205
            A YDRAITVFSPDG LFQV YA EAV++G  AVGV+  D VVL VEK+   KL
Sbjct:    8 AGYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKDGVVLAVEKRITSKL 60
[Close]
BLAST of DY262683 vs. ExPASy Swiss-Prot
Match: PSMA_PYRKO (Proteasome subunit alpha OS=Pyrococcus kodakaraensis GN=psmA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.037e-24
Identity = 61/134 (45.52%), Postives = 88/134 (65.67%), Query Frame = 3 
Query:  447 KIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSGQ-ETVKLAIRAL 845
            KI  +D+HIA A +G+ ADARVLV+RAR+E Q +RLT  +PV +  + + I  L+Q +TQ GGVRPFG + L+ G +     P L++TDPSG +  WKA A G   N+     E++Y++  G+ + +KLAI AL
Sbjct:   68 KIFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNE---KPELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYRDDIGKDDAIKLAILAL 198

HSP 2 Score: 68.9366 bits (167), Expect = 7.514e-11
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 2 
Query:   47 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKL 205
            A YDRAITVFSPDG LFQV YA EAV++G  AVGV+  D VVL VEK+   KL
Sbjct:    8 AGYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKDGVVLAVEKRITSKL 60
[Close]
BLAST of DY262683 vs. ExPASy Swiss-Prot
Match: PSA2_TRYBB (Proteasome subunit alpha type-2 OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.037e-24
Identity = 61/138 (44.20%), Postives = 83/138 (60.14%), Query Frame = 3 
Query:  441 VRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNY-KETSGQETVKLAIRALLE 851
            + K+ +LD+H+    +G+  D RVLV+ AR  CQ +RLT  +P+ +  + R I+ L Q++TQSGGVRPFG S L+ G D       LYQ DPSGTF  WKA + G+ S   R FLEK Y  E   ++ V  A+  L E
Sbjct:   60 LHKVFALDDHVGCTYSGIGPDCRVLVDAARRACQRYRLTYHEPMPISQLVRQISFLFQEFTQSGGVRPFGCSLLVAGADSRGN--HLYQLDPSGTFWTWKATSIGKGSPDARTFLEKRYTNEMEIEDAVHTALLTLKE 195
[Close]
BLAST of DY262683 vs. ExPASy Swiss-Prot
Match: PSMA_THEGJ (Proteasome subunit alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=psmA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.660e-24
Identity = 62/134 (46.27%), Postives = 85/134 (63.43%), Query Frame = 3 
Query:  447 KIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSGQE-TVKLAIRAL 845
            KI  +D+HIA A +G+ ADARVLV+RAR+E Q +RLT  +PV +  + + I  L+Q +TQ GGVRPFG + L+ G +     P LY+TDPSG +  WKA A G   N+     E++Y +    E  +KLAI AL
Sbjct:   68 KIFQIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNE---KPELYETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYSDDIDMEGAIKLAILAL 198
[Close]
BLAST of DY262683 vs. ExPASy Swiss-Prot
Match: PSMA_SULTO (Proteasome subunit alpha OS=Sulfolobus tokodaii GN=psmA PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 2.660e-24
Identity = 55/136 (40.44%), Postives = 88/136 (64.71%), Query Frame = 3 
Query:  441 VRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKE-TSGQETVKLAIRAL 845
            + K+  LD+H+  + AGL +D R+L++ AR +   HRL  ++P+ ++Y+T+ ++ ++Q YTQ GGVRPFG++ +I G D     P L  T+PSG F  + A A G+   +  E+ EKNY+E  + Q+T+ L IRAL
Sbjct:   66 IEKVFILDDHVGCSFAGLASDGRILIDYARSQALQHRLIYDEPINIDYLTKLVSDVKQMYTQHGGVRPFGVALIIGGID-RGKTPKLLMTEPSGQFMPYYAVAIGQGGYTATEYFEKNYREDLNMQDTILLGIRAL 200
[Close]
BLAST of DY262683 vs. ExPASy Swiss-Prot
Match: PSA4_ARATH (Proteasome subunit alpha type-4 OS=Arabidopsis thaliana GN=PAC1 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 3.474e-24
Identity = 52/134 (38.81%), Postives = 88/134 (65.67%), Query Frame = 3 
Query:  447 KIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYK-ETSGQETVKLAIRAL 845
            K+  +D+H+A A AG+ +DA +L+N AR++ Q +    ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D + G   LY +DPSG +  WKA A G N+ + +  L+++YK + + +E V+LA++ L
Sbjct:   64 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFMYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYGGWKAAAVGANNQAAQSILKQDYKDDATREEAVELALKVL 196
[Close]
BLAST of DY262683 vs. ExPASy Swiss-Prot
Match: PSA2_DROME (Proteasome subunit alpha type-2 OS=Drosophila melanogaster GN=Pros25 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 7.740e-24
Identity = 56/121 (46.28%), Postives = 81/121 (66.94%), Query Frame = 3 
Query:  441 VRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKE 803
            V ++  + NHI +  +G+  D R+LV +AR   Q++ LT ++P+ V  + + +A L Q+YTQSGGVRPFG+S LI G+D     P LYQ+DPSG + AWKA A G+N+ + + FLEK Y E
Sbjct:   62 VHRVEMIYNHIGMVYSGMGPDYRLLVKQARKIAQTYYLTYKEPIPVSQLVQRVATLMQEYTQSGGVRPFGVSLLICGWD--NDRPYLYQSDPSGAYFAWKATAMGKNAVNGKTFLEKRYSE 180
[Close]
BLAST of DY262683 vs. ExPASy Swiss-Prot
Match: PSMA_THEON (Proteasome subunit alpha OS=Thermococcus onnurineus (strain NA1) GN=psmA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.011e-23
Identity = 61/134 (45.52%), Postives = 84/134 (62.69%), Query Frame = 3 
Query:  447 KIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSGQE-TVKLAIRAL 845
            KI  +D+HIA A +G+ ADARVLV+RAR+E Q +RLT  +PV +  + + I  L+Q +TQ GGVRPFG + L+ G +     P LY+TDPSG +  W+A A G   N+     E +Y +    E  +KLAI AL
Sbjct:   68 KIFQIDDHIAAAPSGIIADARVLVDRARLEAQVYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVN---DKPELYETDPSGAYFEWRAVAIGSGRNTAMAIFEDHYSDDLDMEGAIKLAILAL 198
The following BLAST results are available for this feature:
BLAST of DY262683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
PSMA_THESM7.001e-2544.53Proteasome subunit alpha OS=Thermococcus sibiricus... [more]
PSA4_SPIOL1.194e-2439.55Proteasome subunit alpha type-4 OS=Spinacia olerac... [more]
PSMA_THEK12.037e-2445.52Proteasome subunit alpha OS=Thermococcus sp. (stra... [more]
PSMA_PYRKO2.037e-2445.52Proteasome subunit alpha OS=Pyrococcus kodakaraens... [more]
PSA2_TRYBB2.037e-2444.20Proteasome subunit alpha type-2 OS=Trypanosoma bru... [more]
PSMA_THEGJ2.660e-2446.27Proteasome subunit alpha OS=Thermococcus gammatole... [more]
PSMA_SULTO2.660e-2440.44Proteasome subunit alpha OS=Sulfolobus tokodaii GN... [more]
PSA4_ARATH3.474e-2438.81Proteasome subunit alpha type-4 OS=Arabidopsis tha... [more]
PSA2_DROME7.740e-2446.28Proteasome subunit alpha type-2 OS=Drosophila mela... [more]
PSMA_THEON1.011e-2345.52Proteasome subunit alpha OS=Thermococcus onnurineu... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100CF03RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262683 ID=DY262683; Name=DY262683; organism=Citrus clementina; type=EST; length=1323bp
TTCAAATAAAAAACAAACTCGAGACCGAAAAAAGGAAGAGAAAATGGCTC
GATACGATCGCGCGATCACGGTCTTTTCTCCGGACGGCCATCTATTCCAA
GTCGAATACGCGCTCGAAGCCGTCCGTAAAGGAAACGCCGCCGTTGGGGT
CCGCGGCACCGACATTGTCGTCCTCGGCGTCGAGAAAAAATCAGCCGTCA
AGCTCCAAGACTCCAGGTAGAAAACATACATTCGCGTAATTAATTATGTT
TAGGTTATATTTGAGCGCGAATTGATTCTGTAGGGTTAAGTTTCGGATTT
TGAATGTATAGTGATTTGTTGTAGTATTAGTTTTGATGAAAATAGCTGAT
TATCTTATAGTTGGGGCAATAATCAGTATAAGATTGTAATTTGCATGCCT
CCTTAGCTTCTGCTTGATTATTGCTTTTGCTTACAGAATGGTGAGGAAGA
TTGTGTCATTGGATAATCACATTGCGCTTGCCTGTGCGGGTCTGAAAGCG
GATGCACGTGTCTTGGTTAACAGAGCGCGTATTGAATGTCAGAGTCATAG
GCTTACTGTAGAGGATCCTGTCACAGTTGAATATATAACGCGGTACATTG
CTGGGCTTCAGCAGAAGTATACACAGAGTGGTGGGGTGAGGCCTTTTGGT
CTTTCGACCTTGATTGTTGGTTTTGACCCCTATACAGGTGTGCCGTCTCT
TTATCAGACTGATCCATCGGGAACTTTTTCAGCATGGAAAGCCAATGCCA
CGGGAAGGAACTCAAATTCAATAAGGGAGTTCTTGGAGAAAAATTATAAA
GAAACCTCTGGGCAAGAAACTGTGAAGTTGGCCATTCGTGCTTTGCTTGA
AGTAAGTTGCTAATTTTCGAATGTGCCTGTGTCTAACCTTGGCTTCGTAA
GTCTAATATGAAACTAGTCTTATCTAATGGCACTTTTCTGTGTTAGTAAA
TATGAGAATCTCTTTTAAATAAGGGTTTTCAAACCTAACCTACTTGGCCT
TTATATTTCAGTGGAGTTATTGTCTTTGAATTAGGAGAACGTTTCAAATA
ATGGTTAAGAAATTTTTCACCTTGTTGAAGGTTGAAAAACTAATTATTGG
GTGAACCCTTAAAAAATTCCGGAAGCCCCGGGCTAAACGGGGAACGGAAT
TTATGGGGGCCCTGGGCCGGATTTTCCCTTTGGAACGGAAGGGGTTAATT
GTCCAAAACCTTGGGAATTTGTTTTGAGAAAAACCTTTTTCCCCCCCCTT
TTCCGGTTTTTTCCACAAACACCCCCTCTTTATAAATAAAAAAAGAGAAA
AAGGGGAGGAAGAAAAGAGGGGG
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